FC921414

Overview
NameFC921414
Unique NameFC921414
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC921414 vs. ExPASy Swiss-Prot
Match: PIWI1_SCHMD (Piwi-like protein 1 OS=Schmidtea mediterranea GN=wi-1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.068e-12
Identity = 46/156 (29.49%), Postives = 72/156 (46.15%), Query Frame = 1 
Query:    1 RDGVSEGQFYQVLLYELDAIRKACASLEPNYQ-PPVTFIIVQKRHHTRLFANNHRDRSSTDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDE----------NNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAA 435
            RDGV + Q      +E DA+ K    +  N   P + +++V+KR   + F +            N  PGTVVD KI  P  ++FYL S    +GT+ P +Y+VL D           +  +   +Q +T +L + Y     ++ V  P +YAH  A
Sbjct:  637 RDGVGDSQLAFTKKFETDAVMKMIEKIYENQTLPQIIYVVVKKRISVKFFKDG----------ANPNPGTVVDEKIVKPNFYEFYLVSQKTTKGTASPTNYNVLMDTKFTNKKTNEVSVMSPSVLQQITYSLTHLYFNWMGTIRVPVPTHYAHRLA 782
The following BLAST results are available for this feature:
BLAST of FC921414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
PIWI1_SCHMD6.068e-1229.49Piwi-like protein 1 OS=Schmidtea mediterranea GN=w... [more]

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Properties
Property NameValue
Genbank descriptionC32104F12EF RVDevelopN Citrus clementina cDNA clone C32104F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921414 ID=FC921414; Name=FC921414; organism=Citrus clementina; type=EST; length=719bp
AGGGATGGAGTAAGTGAAGGGCAATTTTATCAAGTTCTACTTTATGAGTT
GGATGCGATTCGAAAGGCCTGTGCTTCTCTTGAGCCGAATTATCAGCCAC
CTGTGACTTTCATAATTGTACAAAAACGACACCATACTCGGTTATTCGCT
AATAACCACAGGGATAGGAGCAGCACAGATAGGAGTGGGAACATTCTGCC
TGGCACTGTGGTTGATTCTAAAATATGTCATCCAACAGAATTTGATTTTT
ACCTATGCAGCCATGCTGGTATTCAGGGCACAAGTCGACCGGCACATTAC
CATGTGCTATGGGATGAGAACAATTTTACAGCCGACGGAATCCAGTCTTT
GACAAACAATCTTTGTTACACATACGCAAGATGCACACGCTCTGTCTCTG
TGGTTCCTCCAGCATATTATGCACATTTAGCTGCTTTCCGCGCCCGTTTC
TACATGGAACCAGACATGCAGGAGAATGGCTCGACCGATGGCAGTGGTCA
TACCTCCACTAAGAGCACTCGGGCGGTAGGAGAGTCTGGTGTCCGGCCTT
TGCCAGCATTGAAAGAGAACGTGAAGAGGGTGATGTTTTATTGTTAAGAT
GGGGGATAAGGAGTTGATAGTAGCAGGGGAAGAGTAGTAGCTTGGGGATA
TCAATGCAGCAATCACGTTCATTTCCAAATTTNCTCTGTAATGTATGATC
ATGAAGATTTGGCATGCTG
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