FC921419

Overview
NameFC921419
Unique NameFC921419
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ARP6_EMENI (Actin-like protein arp6 OS=Emericella nidulans GN=arp6 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.655e-19
Identity = 70/248 (28.23%), Postives = 111/248 (44.76%), Query Frame = 1
Query:    1 GNNSSTHISSSEMSNIVVLDNGGGLIKAGHGGERDP----------AVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSAAVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXX--------TEPLFALPSIQRATDELVFEDFNF-----------KSLFVADPPSL------VHLYEAS--RRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            G NS +H  S      ++ DNG   +KAG+  +  P             IPN + +  +++ ++       +   D       RP+++GY +N + Q++IW + F                       TE   ALP++Q+  DE++ E++ F           K   +   PSL        L+E S   +P  + S  +C LVVD G+S T   PV++   +   ++R+DL GK LTNYLKELVS R
Sbjct:   10 GKNSISHAQSLPGKTFII-DNGAYNMKAGYAPDSQPLDDEEIALSACAAIPNAIVKTRANRTYV--GAQIGTNVTDWNEMLFRRPVEKGYTVNWEAQKEIWENSFFDERTVRSKELHIADPEDVTIIFTEAPNALPALQKNADEIIMEEWGFGGYLRCVVGMAKPFALNTGPSLNAWNEIQSLFEDSVLSQPRAVASPAECLLVVDSGYSHTVITPVYRGRPLQRGIRRLDLGGKHLTNYLKELVSMR 254          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ARP6_NEUCR (Actin-like protein arp-6 OS=Neurospora crassa GN=arp-6 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.725e-19
Identity = 64/222 (28.83%), Postives = 106/222 (47.75%), Query Frame = 1
Query:    1 GNNSSTHISSSEMSNIVVLDNGGGLIKAGH----GGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSAAVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXX---TEPLFALPSIQRATDELVFEDFNFKSLFVADPP---SLVHLYEASRRPYGLL-SETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            G   S     +  +  +VLDNG   IKAG       +  P + IPNC+ R    K ++    +     +D +  A  RP+++G+++N + Q++IW   F                  TE   +LPS+Q   D++VFE++ F S +    P   +   +    R P   + S  Q  L++D G+S T   P+ Q   ++ A++R+D+ GK +TNYL  L+S R
Sbjct:    6 GAKKSRAAGPAPPTTTLVLDNGADTIKAGFVSDDKSDGKPRI-IPNCLARDRHRKIYVG---SELEKCKDFSELAFRRPVEKGFIVNWEAQKEIWDREFFDDKAAQKCDPSDTRLILTEQPNSLPSLQTHCDQIVFEEYGFASYYRGLGPVFNAYRDIQSIFRTPQSTIDSPAQVILLIDSGYSHTTVTPILQGRPLHPAIRRLDVGGKLMTNYLTRLLSVR 223          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ARP6_ASPFU (Actin-like protein arp6 OS=Aspergillus fumigatus GN=arp6 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.318e-18
Identity = 66/220 (30.00%), Postives = 100/220 (45.45%), Query Frame = 1
Query:   52 VLDNGGGLIKAGH----------GGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSAAVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXX--------TEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRR---PYGL-----LSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            ++DNG   +KAG+          G       TIPN + +   ++ +I       S   D       RP+++GY++N + Q++IW + F                       TE   ALP++Q+  DE+V E++ F        P L    E       P G      +S  QC LVVD G+S T   PV++   +  A++R+D+ GK LTNYLKE+VS R
Sbjct:   26 IIDNGAYTLKAGYAPGFPPPEDLGQALSACSTIPNAIAKTRGNRIYI--GAQLNSQVTDWNEMVFRRPVEKGYIVNWEAQKEIWDNAFFDEKTVRSKDLRIESPEDTTLVLTEAPNALPTLQKNADEIVMEEWGFGGYVRFVGPVLNAWNEVQSLFGDPIGQDSSSPISPKQCLLVVDSGYSHTTVTPVYKGQPIQRAIRRLDIGGKHLTNYLKEMVSMR 243          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ARP6_CAEEL (Actin-like protein C08B11.6 OS=Caenorhabditis elegans GN=C08B11.6 PE=2 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 1.903e-17
Identity = 57/199 (28.64%), Postives = 97/199 (48.74%), Query Frame = 1
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSAAVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYRAITL 645
            ++ DNGG  +K G      P + +PN + +    KK +  +      ++  +   V RPI+RGY++N D Q+ IW   F               T+  + +P++   + E++F+ F F  +      +LV  +         ++  +C++VVD GFS+T  A       +  +V RID+ GKALTN LK+ VSYR + +
Sbjct:    6 IIFDNGGHNMKIGTIDSESPRL-VPNSIVKAKHEKKRVFVAHEQEECSDKFSLFYV-RPIERGYVVNWDTQQQIWEKTFGSMDVEASTSRIAL-TDNNYLIPALPDVSSEILFDYFGFTEVHKTSASTLVAKHSNK------INNEKCAVVVDSGFSWTTVASFVNGMLIQDSVIRIDVGGKALTNKLKDWVSYRQLNV 195          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ARP6_YARLI (Actin-like protein ARP6 OS=Yarrowia lipolytica GN=ARP6 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.536e-17
Identity = 58/198 (29.29%), Postives = 90/198 (45.45%), Query Frame = 1
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSAAVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQC---SLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            ++LDNG   IK+   G+ +     PN + R      ++    T     +D  S    RP ++G LIN D+Q+ +W +LF               T+    LP +    D++VFE++ F+     +  +LV             S  QC    LVVD GF+ TH  PV         ++R+++ GK +TN LKE VS+R
Sbjct:    1 MILDNGSYAIKSDRTGDAET----PNALIRGRDKTVYVGQDLTKC---KDYASLVFKRPSEKGQLINWDIQKAVWDNLFYNPQTGVDTDSSLLLTQYPLTLPQVSANIDQVVFEEYGFEQYHRTEAANLV-----------AWSSGQCLDACLVVDAGFNATHVTPVLFGQVHEPGIRRVNVGGKTMTNLLKETVSFR 180          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ARP6_KLULA (Actin-like protein ARP6 OS=Kluyveromyces lactis GN=ARP6 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.588e-16
Identity = 54/212 (25.47%), Postives = 98/212 (46.23%), Query Frame = 1
Query:   46 IVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSAAVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXT--------EPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLL--------SETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            ++V+DNG   IK G  G   P   + NC+ +   S+   H S        D++ A + RP + G L++ +L+ ++W + F               T        E L  +P + +  D+++FE+++FKS+F       +  Y+   +   +         S     LV+D GF+ T A P+ +      A+K++D+ G+ LT  L+E +S+R
Sbjct:    5 VLVIDNGSYEIKFGESGWDQPLRAL-NCLTKDKYSR--FHLS-NQTKKMRDISQALIRRPHELGQLVSWELESEVWDYCFYNEDDFHWNLTHDNDTKDHHLVVSETLMTIPELSKNMDQVIFEEYDFKSMFKGPVAQYIPFYQGQYQDDAMTAAEDKKTSSYKDFQLVIDSGFNCTWAVPIIKGVPYYKAIKKLDIGGRFLTGLLQETISFR 212          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACT_CYAME (Actin OS=Cyanidioschyzon merolae PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.686e-16
Identity = 53/206 (25.73%), Postives = 95/206 (46.12%), Query Frame = 1
Query:   28 SSEMSNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            + E    +V+DNG G++KAG  G+  P    P+ + RP      +      +   ++  S     ++  PI+ G + N D    IW H F               TE      + +    +++FE FN  +++VA   +++ LY + R            +VVD G   TH  P+++ + + +A+ RIDL G+ LT+YL ++++ R
Sbjct:    2 TEEEITALVIDNGSGMVKAGFAGDDAPRAVFPSIVGRPRHQAVMVGMGQKDSYVGDEAQSKRGILSLKYPIEHGIVTNWDDMEKIWYHTFYNELRISPEDHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQ-AVLSLYASGRTT---------GIVVDSGDGVTHTVPIYEGYALPHAIMRIDLAGRDLTDYLAKILTER 197          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACT_PICPG (Actin OS=Pichia pastoris (strain GS115) GN=ACT1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.994e-16
Identity = 54/202 (26.73%), Postives = 92/202 (45.54%), Query Frame = 1
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYRAIT 642
            +V+DNG G+ KAG+ G+  P    P+ + RP      +      +   ++  S      +  PI+ G + N D    IW H F               TE      S +    +++FE FN  + +V+   +++ LY + R            +V+D G   TH  P++  F++ +A+ RIDL G+ LT+YL +++S R  T
Sbjct:    9 LVIDNGSGMCKAGYAGDDAPHTVFPSVVGRPRHQGVMVGMGQKDSFVGDEAQSKRGILTLRYPIEHGIVTNWDDMEKIWHHTFYNELRLAPEEHPVLLTEAPMNPKSNREKMTQIMFETFNVPAFYVSIQ-AVLSLYASGRTT---------GIVLDSGDGVTHVVPIYAGFSLPHAILRIDLAGRDLTDYLMKILSERGYT 200          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACT_AJECG (Actin OS=Ajellomyces capsulata (strain ATCC 26029 / G186AR / H82 / RMSCC 2432) GN=HCBG_08711 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.044e-15
Identity = 54/199 (27.14%), Postives = 90/199 (45.23%), Query Frame = 1
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            +V+DNG G+ KAG  G+  P    P+ + RP      I      +   ++  S      +  PI+ G + N D    IW H F               TE      S +    ++VFE FN  + +V+   +++ LY + R            +V+D G   TH  P+++ F + +A+ RID+ G+ LTNYL ++++ R
Sbjct:    8 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQ-AVLSLYASGRTT---------GIVLDSGDGVTHVVPIYEGFALPHAISRIDMAGRDLTNYLMKILAER 196          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACT1_OXYTR (Actin, cytoplasmic OS=Oxytricha trifallax PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.044e-15
Identity = 59/202 (29.21%), Postives = 92/202 (45.54%), Query Frame = 1
Query:   52 VLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSAAVHR--------PIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            V+DNG G++KAG  GE  P    P+ + RP +    I       SA+E L   A  +        PI+ G + + D    IW H F               TE      + +    +++FE FN  +L+VA   +++ LY A R            +V D G   TH  P+++ F++ +AV RI L G+ LT +L +L++ R
Sbjct:    8 VIDNGSGVVKAGFAGEDAPRAVFPSIVGRPKNVSALIGVD----SASEYLGDEAQQKRGVLKIFYPIEHGIVKDWDDMEKIWNHTFYVELRVQPDEHPILLTEAPLNPKTNREKMTQIMFETFNVPALYVAIQ-AVLSLYSAGRTT---------GIVCDAGDGVTHTVPIYEGFSIPHAVSRIQLAGRDLTTFLAKLLTER 195          
The following BLAST results are available for this feature:
BLAST of FC921419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 369
Match NameE-valueIdentityDescription
ARP6_EMENI2.655e-1928.23Actin-like protein arp6 OS=Emericella nidulans GN=... [more]
ARP6_NEUCR7.725e-1928.83Actin-like protein arp-6 OS=Neurospora crassa GN=a... [more]
ARP6_ASPFU1.318e-1830.00Actin-like protein arp6 OS=Aspergillus fumigatus G... [more]
ARP6_CAEEL1.903e-1728.64Actin-like protein C08B11.6 OS=Caenorhabditis eleg... [more]
ARP6_YARLI5.536e-1729.29Actin-like protein ARP6 OS=Yarrowia lipolytica GN=... [more]
ARP6_KLULA3.588e-1625.47Actin-like protein ARP6 OS=Kluyveromyces lactis GN... [more]
ACT_CYAME4.686e-1625.73Actin OS=Cyanidioschyzon merolae PE=3 SV=1[more]
ACT_PICPG7.994e-1626.73Actin OS=Pichia pastoris (strain GS115) GN=ACT1 PE... [more]
ACT_AJECG1.044e-1527.14Actin OS=Ajellomyces capsulata (strain ATCC 26029 ... [more]
ACT1_OXYTR1.044e-1529.21Actin, cytoplasmic OS=Oxytricha trifallax PE=3 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC32104G05EF RVDevelopN Citrus clementina cDNA clone C32104G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921419 ID=FC921419; Name=FC921419; organism=Citrus clementina; type=EST; length=671bp
GGTAACAATTCCAGCACCCACATCTCATCCTCGGAGATGTCAAATATCGT
CGTTCTAGACAATGGTGGCGGCCTCATAAAAGCGGGTCATGGCGGCGAGC
GTGACCCCGCCGTCACAATACCCAACTGCATGTACCGTCCACTCTCCTCC
AAAAAATTCATCCACCCATCTCCCACCGCCGCCTCCGCCACCGAAGACCT
GACCTCTGCCGCCGTCCACCGCCCCATTGACCGCGGTTACCTTATAAATA
GCGACCTCCAGCGCGACATCTGGGCCCACCTCTTCTCCTCTCTCCTCCAC
ATCAGCCCCTCCGCCTCCTCTCTCCTACTCACCGAACCCCTCTTCGCGCT
TCCCTCTATCCAACGCGCCACCGACGAGCTCGTCTTCGAGGACTTCAACT
TCAAGTCGCTCTTCGTTGCCGACCCGCCGTCGTTAGTTCACCTCTACGAG
GCCAGCCGGCGACCGTACGGGCTGTTGTCGGAGACGCAGTGTAGTCTTGT
GGTTGACTGTGGGTTCAGTTTCACGCACGCGGCGCCGGTGTTTCAGAATT
TCACGGTGAATTACGCCGTTAAAAGGATTGACTTGNGCGGTAAGGCGTTG
ACTAATTACTTGAAGGAGCTGGTATCGTATCGCGCTATTACGTTATGGAT
GAGACTTTCATTATCGATGAT
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