FC921419

Overview
NameFC921419
Unique NameFC921419
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACTG_XENTR (Actin, cytoplasmic 2 OS=Xenopus tropicalis GN=actg1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.571e-14
Identity = 50/199 (25.13%), Postives = 91/199 (45.73%), Query Frame = 1 
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            +V+DNG G+ KAG  G+  P    P+ + RP      +      +   ++  S      +  PI+ G + N D    IW H F               TE      + +    +++FE FN  +++VA   +++ LY + R            +V+D G   TH  P+++ + + +A+ R+DL G+ LT+YL ++++ R
Sbjct:    8 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ-AVLSLYASGRTT---------GIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 196
[Close]
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACTG_TRISC (Actin, cytoplasmic 2 OS=Triakis scyllium GN=actg1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.571e-14
Identity = 50/199 (25.13%), Postives = 91/199 (45.73%), Query Frame = 1 
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            +V+DNG G+ KAG  G+  P    P+ + RP      +      +   ++  S      +  PI+ G + N D    IW H F               TE      + +    +++FE FN  +++VA   +++ LY + R            +V+D G   TH  P+++ + + +A+ R+DL G+ LT+YL ++++ R
Sbjct:    8 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ-AVLSLYASGRTT---------GIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 196
[Close]
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACTB_XENTR (Actin, cytoplasmic 1 OS=Xenopus tropicalis GN=actb PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.571e-14
Identity = 50/199 (25.13%), Postives = 91/199 (45.73%), Query Frame = 1 
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            +V+DNG G+ KAG  G+  P    P+ + RP      +      +   ++  S      +  PI+ G + N D    IW H F               TE      + +    +++FE FN  +++VA   +++ LY + R            +V+D G   TH  P+++ + + +A+ R+DL G+ LT+YL ++++ R
Sbjct:    8 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ-AVLSLYASGRTT---------GIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 196
[Close]
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACTB_XENLA (Actin, cytoplasmic 1 OS=Xenopus laevis GN=actb PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.571e-14
Identity = 50/199 (25.13%), Postives = 91/199 (45.73%), Query Frame = 1 
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            +V+DNG G+ KAG  G+  P    P+ + RP      +      +   ++  S      +  PI+ G + N D    IW H F               TE      + +    +++FE FN  +++VA   +++ LY + R            +V+D G   TH  P+++ + + +A+ R+DL G+ LT+YL ++++ R
Sbjct:    8 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ-AVLSLYASGRTT---------GIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 196
[Close]
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACTB_TRIVU (Actin, cytoplasmic 1 OS=Trichosurus vulpecula GN=ACTB PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.571e-14
Identity = 50/199 (25.13%), Postives = 91/199 (45.73%), Query Frame = 1 
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            +V+DNG G+ KAG  G+  P    P+ + RP      +      +   ++  S      +  PI+ G + N D    IW H F               TE      + +    +++FE FN  +++VA   +++ LY + R            +V+D G   TH  P+++ + + +A+ R+DL G+ LT+YL ++++ R
Sbjct:    8 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ-AVLSLYASGRTT---------GIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 196
[Close]
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACTB_SPECI (Actin, cytoplasmic 1 OS=Spermophilus citellus GN=ACTB PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.571e-14
Identity = 50/199 (25.13%), Postives = 91/199 (45.73%), Query Frame = 1 
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            +V+DNG G+ KAG  G+  P    P+ + RP      +      +   ++  S      +  PI+ G + N D    IW H F               TE      + +    +++FE FN  +++VA   +++ LY + R            +V+D G   TH  P+++ + + +A+ R+DL G+ LT+YL ++++ R
Sbjct:    8 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ-AVLSLYASGRTT---------GIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 196
[Close]
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACTB_SIGHI (Actin, cytoplasmic 1 OS=Sigmodon hispidus GN=ACTB PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.571e-14
Identity = 50/199 (25.13%), Postives = 91/199 (45.73%), Query Frame = 1 
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            +V+DNG G+ KAG  G+  P    P+ + RP      +      +   ++  S      +  PI+ G + N D    IW H F               TE      + +    +++FE FN  +++VA   +++ LY + R            +V+D G   TH  P+++ + + +A+ R+DL G+ LT+YL ++++ R
Sbjct:    8 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ-AVLSLYASGRTT---------GIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 196
[Close]
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACTB_SHEEP (Actin, cytoplasmic 1 OS=Ovis aries GN=ACTB PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.571e-14
Identity = 50/199 (25.13%), Postives = 91/199 (45.73%), Query Frame = 1 
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            +V+DNG G+ KAG  G+  P    P+ + RP      +      +   ++  S      +  PI+ G + N D    IW H F               TE      + +    +++FE FN  +++VA   +++ LY + R            +V+D G   TH  P+++ + + +A+ R+DL G+ LT+YL ++++ R
Sbjct:    8 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ-AVLSLYASGRTT---------GIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 196
[Close]
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACTB_SALSA (Actin, cytoplasmic 1 OS=Salmo salar GN=actb PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.571e-14
Identity = 50/199 (25.13%), Postives = 91/199 (45.73%), Query Frame = 1 
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            +V+DNG G+ KAG  G+  P    P+ + RP      +      +   ++  S      +  PI+ G + N D    IW H F               TE      + +    +++FE FN  +++VA   +++ LY + R            +V+D G   TH  P+++ + + +A+ R+DL G+ LT+YL ++++ R
Sbjct:    8 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ-AVLSLYASGRTT---------GIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 196
[Close]
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACTB_RAT (Actin, cytoplasmic 1 OS=Rattus norvegicus GN=Actb PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.571e-14
Identity = 50/199 (25.13%), Postives = 91/199 (45.73%), Query Frame = 1 
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            +V+DNG G+ KAG  G+  P    P+ + RP      +      +   ++  S      +  PI+ G + N D    IW H F               TE      + +    +++FE FN  +++VA   +++ LY + R            +V+D G   TH  P+++ + + +A+ R+DL G+ LT+YL ++++ R
Sbjct:    8 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ-AVLSLYASGRTT---------GIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 196
The following BLAST results are available for this feature:
BLAST of FC921419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 369
Match NameE-valueIdentityDescription
ACTG_XENTR2.571e-1425.13Actin, cytoplasmic 2 OS=Xenopus tropicalis GN=actg... [more]
ACTG_TRISC2.571e-1425.13Actin, cytoplasmic 2 OS=Triakis scyllium GN=actg1 ... [more]
ACTB_XENTR2.571e-1425.13Actin, cytoplasmic 1 OS=Xenopus tropicalis GN=actb... [more]
ACTB_XENLA2.571e-1425.13Actin, cytoplasmic 1 OS=Xenopus laevis GN=actb PE=... [more]
ACTB_TRIVU2.571e-1425.13Actin, cytoplasmic 1 OS=Trichosurus vulpecula GN=A... [more]
ACTB_SPECI2.571e-1425.13Actin, cytoplasmic 1 OS=Spermophilus citellus GN=A... [more]
ACTB_SIGHI2.571e-1425.13Actin, cytoplasmic 1 OS=Sigmodon hispidus GN=ACTB ... [more]
ACTB_SHEEP2.571e-1425.13Actin, cytoplasmic 1 OS=Ovis aries GN=ACTB PE=2 SV... [more]
ACTB_SALSA2.571e-1425.13Actin, cytoplasmic 1 OS=Salmo salar GN=actb PE=2 S... [more]
ACTB_RAT2.571e-1425.13Actin, cytoplasmic 1 OS=Rattus norvegicus GN=Actb ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32104G05EF RVDevelopN Citrus clementina cDNA clone C32104G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921419 ID=FC921419; Name=FC921419; organism=Citrus clementina; type=EST; length=671bp
GGTAACAATTCCAGCACCCACATCTCATCCTCGGAGATGTCAAATATCGT
CGTTCTAGACAATGGTGGCGGCCTCATAAAAGCGGGTCATGGCGGCGAGC
GTGACCCCGCCGTCACAATACCCAACTGCATGTACCGTCCACTCTCCTCC
AAAAAATTCATCCACCCATCTCCCACCGCCGCCTCCGCCACCGAAGACCT
GACCTCTGCCGCCGTCCACCGCCCCATTGACCGCGGTTACCTTATAAATA
GCGACCTCCAGCGCGACATCTGGGCCCACCTCTTCTCCTCTCTCCTCCAC
ATCAGCCCCTCCGCCTCCTCTCTCCTACTCACCGAACCCCTCTTCGCGCT
TCCCTCTATCCAACGCGCCACCGACGAGCTCGTCTTCGAGGACTTCAACT
TCAAGTCGCTCTTCGTTGCCGACCCGCCGTCGTTAGTTCACCTCTACGAG
GCCAGCCGGCGACCGTACGGGCTGTTGTCGGAGACGCAGTGTAGTCTTGT
GGTTGACTGTGGGTTCAGTTTCACGCACGCGGCGCCGGTGTTTCAGAATT
TCACGGTGAATTACGCCGTTAAAAGGATTGACTTGNGCGGTAAGGCGTTG
ACTAATTACTTGAAGGAGCTGGTATCGTATCGCGCTATTACGTTATGGAT
GAGACTTTCATTATCGATGAT
back to top