FC921419

Overview
NameFC921419
Unique NameFC921419
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACT_LEIMA (Actin OS=Leishmania major PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.364e-15
Identity = 52/205 (25.37%), Postives = 97/205 (47.32%), Query Frame = 1
Query:   22 ISSSEMSNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELV 624
            ++ +E S+IV  DNG G++KAG  G+  P    P+ + RP + +  +  +       ++  S     ++  PI+ G + N D    IW H F               TE        +    +++FE FN  SL++    +++ LY + R            +V+D G   TH  P+++ +++ +AV+R+D+ G+ LT YL +++
Sbjct:    1 MADNEQSSIVC-DNGSGMVKAGFSGDDAPRHVFPSIVGRPKNMQAMMGSANKTVYVGDEAQSKRGVLSLKYPIEHGIVTNWDDMEKIWHHTFYNDVRVNPEQHNVLLTEAPMNPKQNREKMTQIMFETFNVPSLYIGIQ-AVLSLYSSGRTT---------GIVLDAGDGVTHTVPIYEGYSLPHAVRRVDMAGRDLTEYLMKIM 194          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACT_THELA (Actin OS=Thermomyces lanuginosus PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.781e-15
Identity = 53/199 (26.63%), Postives = 91/199 (45.73%), Query Frame = 1
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            +V+DNG G+ KAG  G+  P    P+ + RP      I      +   ++  S     ++  PI+ G + N D    IW H F               TE      S +    ++VFE FN  + +V+   +++ LY + R            +V+D G   TH  P+++ F + +A+ RID+ G+ LT+YL ++++ R
Sbjct:    8 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGVLSLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQ-AVLSLYASGRTT---------GIVLDSGDGVTHTVPIYEGFALTHAISRIDIAGRDLTDYLMKILAER 196          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACT_BOTFU (Actin OS=Botryotinia fuckeliana GN=actA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.781e-15
Identity = 53/202 (26.24%), Postives = 92/202 (45.54%), Query Frame = 1
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYRAIT 642
            +V+DNG G+ KAG  G+  P    P+ + RP      I      +   ++  S      +  PI+ G + N D    IW H F               TE      S +    ++VFE FN  + +V+   +++ LY + R            +V+D G   TH  P+++ F++ +A+ R+D+ G+ LT+YL ++++ R  T
Sbjct:    8 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQ-AVLSLYASGRTT---------GIVLDSGDGVTHVVPIYEGFSLPHAIARVDMAGRDLTDYLMKILAERGYT 199          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACTS_ORYLA (Actin, alpha skeletal muscle OS=Oryzias latipes GN=acta1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.781e-15
Identity = 53/204 (25.98%), Postives = 93/204 (45.59%), Query Frame = 1
Query:   34 EMSNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            E +  +V DNG GL+KAG  G+  P    P+ + RP      +      +   ++  S      +  PI+ G + N D    IW H F               TE      + +    +++FE FN  +++VA   +++ LY + R            +V+D G   TH  PV++ + + +A+ R+DL G+ LT+YL ++++ R
Sbjct:    5 EETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQ-AVLSLYASGRTT---------GIVLDAGDGVTHNVPVYEGYALPHAIMRLDLAGRDLTDYLMKILTER 198          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACTG_EMENI (Actin, gamma OS=Emericella nidulans GN=acnA PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.781e-15
Identity = 53/202 (26.24%), Postives = 91/202 (45.05%), Query Frame = 1
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYRAIT 642
            +V+DNG G+ KAG  G+  P    P+ + RP      I      +   ++  S      +  PI+ G + N D    IW H F               TE      S +    ++VFE FN  + +V+   +++ LY + R            +V+D G   TH  P+++ F + +A+ R+D+ G+ LT+YL ++++ R  T
Sbjct:    8 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQ-AVLSLYASGRTT---------GIVLDSGDGVTHVVPIYEGFALPHAISRVDMAGRDLTDYLMKILAERGYT 199          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACTC_XENLA (Actin, alpha cardiac muscle 1 OS=Xenopus laevis GN=actc1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.781e-15
Identity = 52/204 (25.49%), Postives = 94/204 (46.08%), Query Frame = 1
Query:   34 EMSNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            E +  +V DNG GL+KAG  G+  P    P+ + RP      +      +   ++  S      +  PI+ G + N D    IW H F               TE      + +    +++FE FN  +++VA   +++ LY + R            +V+D G   TH  P+++ + + +A++R+DL G+ LT+YL ++++ R
Sbjct:    5 EETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQ-AVLSLYASGRTT---------GIVLDSGDGVTHNVPIYEGYALPHAIQRLDLAGRDLTDYLMKILTER 198          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACT_PICAN (Actin OS=Pichia angusta GN=ACT PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.326e-15
Identity = 58/205 (28.29%), Postives = 93/205 (45.37%), Query Frame = 1
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSS-------KKFIHPSPTAASATEDLTSAAVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYRAIT 642
            +V+DNG G+ KAG  G+  P    P+ + RP          +K  +    A S    LT   +  PI+ G + N D    IW H F               TE      S +    +++FE FN  + +V+   +++ LY + R            +V+D G   TH  P++  F++ +A+ RIDL G+ LT+YL +++S R  T
Sbjct:    9 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGIMVGMGQKDSYVGDKAQSKRGILT---LRYPIEHGIVTNWDNLEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKSNREKMTQILFETFNVPAFYVSIQ-AVLSLYSSGRTT---------GIVLDSGDGVTHVVPIYAGFSLPHAILRIDLAGRDLTDYLMKILSERGYT 200          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACT_NEUCR (Actin OS=Neurospora crassa GN=act-1 PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.326e-15
Identity = 53/202 (26.24%), Postives = 91/202 (45.05%), Query Frame = 1
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYRAIT 642
            +V+DNG G+ KAG  G+  P    P+ + RP      I      +   ++  S      +  PI+ G + N D    IW H F               TE      S +    ++VFE FN  + +V+   +++ LY + R            +V+D G   TH  P+++ F + +A+ R+D+ G+ LT+YL ++++ R  T
Sbjct:    8 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQ-AVLSLYASGRTT---------GIVLDSGDGVTHVVPIYEGFALPHAIARVDMAGRDLTDYLMKILAERGYT 199          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACT_GAEGA (Actin OS=Gaeumannomyces graminis var. avenae GN=ACT PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.326e-15
Identity = 53/202 (26.24%), Postives = 91/202 (45.05%), Query Frame = 1
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYRAIT 642
            +V+DNG G+ KAG  G+  P    P+ + RP      I      +   ++  S      +  PI+ G + N D    IW H F               TE      S +    ++VFE FN  + +V+   +++ LY + R            +V+D G   TH  P+++ F + +A+ R+D+ G+ LT+YL ++++ R  T
Sbjct:    8 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQ-AVLSLYASGRTT---------GIVLDSGDGVTHVVPIYEGFALPHAIARVDMAGRDLTDYLMKILAERGYT 199          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACTY_DROME (Actin-like protein 53D OS=Drosophila melanogaster GN=Arp53D PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.326e-15
Identity = 58/215 (26.98%), Postives = 95/215 (44.19%), Query Frame = 1
Query:   13 STHISSSEMSNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRP----LSSKKFIHPSPTAASATEDLTSAAVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYRAITL 645
            S+ + S+     VV+DNG G+ KAG   E  P    P+ + RP    +     I  S    +A        +  PI+ G + N D    +W H +                 PL    + ++ T E++FE F   + +VA   +++ LY   R            +VVD G   TH  P+++ F + +A  R+DL G+ LT+YL +L+  R +T+
Sbjct:    2 SSEVDSNSHHAAVVIDNGSGVCKAGFSPEDTPRAVFPSIVGRPRHLNVLLDSVIGDSVIGEAAARKRGILTLKYPIEHGMVKNWDEMEMVWQHTYELLRADPMDLPALLTEAPLNPKKNREKMT-EIMFEHFQVPAFYVA-VQAVLSLYATGRT---------VGIVVDSGDGVTHTVPIYEGFALPHACVRVDLAGRDLTDYLCKLLLERGVTM 205          
The following BLAST results are available for this feature:
BLAST of FC921419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 369
Match NameE-valueIdentityDescription
ACT_LEIMA1.364e-1525.37Actin OS=Leishmania major PE=3 SV=1[more]
ACT_THELA1.781e-1526.63Actin OS=Thermomyces lanuginosus PE=3 SV=1[more]
ACT_BOTFU1.781e-1526.24Actin OS=Botryotinia fuckeliana GN=actA PE=3 SV=1[more]
ACTS_ORYLA1.781e-1525.98Actin, alpha skeletal muscle OS=Oryzias latipes GN... [more]
ACTG_EMENI1.781e-1526.24Actin, gamma OS=Emericella nidulans GN=acnA PE=3 S... [more]
ACTC_XENLA1.781e-1525.49Actin, alpha cardiac muscle 1 OS=Xenopus laevis GN... [more]
ACT_PICAN2.326e-1528.29Actin OS=Pichia angusta GN=ACT PE=3 SV=1[more]
ACT_NEUCR2.326e-1526.24Actin OS=Neurospora crassa GN=act-1 PE=3 SV=2[more]
ACT_GAEGA2.326e-1526.24Actin OS=Gaeumannomyces graminis var. avenae GN=AC... [more]
ACTY_DROME2.326e-1526.98Actin-like protein 53D OS=Drosophila melanogaster ... [more]

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Properties
Property NameValue
Genbank descriptionC32104G05EF RVDevelopN Citrus clementina cDNA clone C32104G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921419 ID=FC921419; Name=FC921419; organism=Citrus clementina; type=EST; length=671bp
GGTAACAATTCCAGCACCCACATCTCATCCTCGGAGATGTCAAATATCGT
CGTTCTAGACAATGGTGGCGGCCTCATAAAAGCGGGTCATGGCGGCGAGC
GTGACCCCGCCGTCACAATACCCAACTGCATGTACCGTCCACTCTCCTCC
AAAAAATTCATCCACCCATCTCCCACCGCCGCCTCCGCCACCGAAGACCT
GACCTCTGCCGCCGTCCACCGCCCCATTGACCGCGGTTACCTTATAAATA
GCGACCTCCAGCGCGACATCTGGGCCCACCTCTTCTCCTCTCTCCTCCAC
ATCAGCCCCTCCGCCTCCTCTCTCCTACTCACCGAACCCCTCTTCGCGCT
TCCCTCTATCCAACGCGCCACCGACGAGCTCGTCTTCGAGGACTTCAACT
TCAAGTCGCTCTTCGTTGCCGACCCGCCGTCGTTAGTTCACCTCTACGAG
GCCAGCCGGCGACCGTACGGGCTGTTGTCGGAGACGCAGTGTAGTCTTGT
GGTTGACTGTGGGTTCAGTTTCACGCACGCGGCGCCGGTGTTTCAGAATT
TCACGGTGAATTACGCCGTTAAAAGGATTGACTTGNGCGGTAAGGCGTTG
ACTAATTACTTGAAGGAGCTGGTATCGTATCGCGCTATTACGTTATGGAT
GAGACTTTCATTATCGATGAT
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