FC921419

Overview
NameFC921419
Unique NameFC921419
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACTG_CEPAC (Actin, gamma OS=Cephalosporium acremonium GN=ACT PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.326e-15
Identity = 53/202 (26.24%), Postives = 91/202 (45.05%), Query Frame = 1
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYRAIT 642
            +V+DNG G+ KAG  G+  P    P+ + RP      I      +   ++  S      +  PI+ G + N D    IW H F               TE      S +    ++VFE FN  + +V+   +++ LY + R            +V+D G   TH  P+++ F + +A+ R+D+ G+ LT+YL ++++ R  T
Sbjct:    8 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQ-AVLSLYASGRTT---------GIVLDSGDGVTHVVPIYEGFALPHAIARVDMAGRDLTDYLMKILAERGYT 199          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACT_HISCA (Actin OS=Histriculus cavicola PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.038e-15
Identity = 61/203 (30.05%), Postives = 96/203 (47.29%), Query Frame = 1
Query:   52 VLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSAAVHR--------PIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTE-PLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            V+DNG G++KAG  GE  P    P+ + RP +    I       SA+E L   A  +        PI+ G + + D    IW H F               TE PL    + ++ T +++FE FN  +L+VA   +++ LY A R            +V D G   TH  P+++ F++ +AV RI L G+ LT ++ +L++ R
Sbjct:    8 VIDNGSGVVKAGFSGEDAPRAVYPSIVGRPKNVSALIGVD----SASEYLGDEAQQKRGVLKIFYPIEHGIVKDWDDMEKIWNHTFYVELRVSPDEHPVLLTEAPLNPKVNREKMT-QIMFETFNVPALYVAIQ-AVLSLYSAGRTT---------GIVCDAGDGVTHTVPIYEGFSIPHAVSRIQLAGRDLTTFMAKLLTER 195          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACTC_RAT (Actin, alpha cardiac muscle 1 OS=Rattus norvegicus GN=Actc1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.038e-15
Identity = 52/204 (25.49%), Postives = 93/204 (45.59%), Query Frame = 1
Query:   34 EMSNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            E +  +V DNG GL+KAG  G+  P    P+ + RP      +      +   ++  S      +  PI+ G + N D    IW H F               TE      + +    +++FE FN  +++VA   +++ LY + R            +V+D G   TH  P+++ + + +A+ R+DL G+ LT+YL ++++ R
Sbjct:    5 EETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQ-AVLSLYASGRTT---------GIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTER 198          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACTC_MOUSE (Actin, alpha cardiac muscle 1 OS=Mus musculus GN=Actc1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.038e-15
Identity = 52/204 (25.49%), Postives = 93/204 (45.59%), Query Frame = 1
Query:   34 EMSNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            E +  +V DNG GL+KAG  G+  P    P+ + RP      +      +   ++  S      +  PI+ G + N D    IW H F               TE      + +    +++FE FN  +++VA   +++ LY + R            +V+D G   TH  P+++ + + +A+ R+DL G+ LT+YL ++++ R
Sbjct:    5 EETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQ-AVLSLYASGRTT---------GIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTER 198          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACTC_HUMAN (Actin, alpha cardiac muscle 1 OS=Homo sapiens GN=ACTC1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.038e-15
Identity = 52/204 (25.49%), Postives = 93/204 (45.59%), Query Frame = 1
Query:   34 EMSNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            E +  +V DNG GL+KAG  G+  P    P+ + RP      +      +   ++  S      +  PI+ G + N D    IW H F               TE      + +    +++FE FN  +++VA   +++ LY + R            +V+D G   TH  P+++ + + +A+ R+DL G+ LT+YL ++++ R
Sbjct:    5 EETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQ-AVLSLYASGRTT---------GIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTER 198          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACTC_CHICK (Actin, alpha cardiac muscle 1 OS=Gallus gallus GN=ACTC1 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.038e-15
Identity = 52/204 (25.49%), Postives = 93/204 (45.59%), Query Frame = 1
Query:   34 EMSNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            E +  +V DNG GL+KAG  G+  P    P+ + RP      +      +   ++  S      +  PI+ G + N D    IW H F               TE      + +    +++FE FN  +++VA   +++ LY + R            +V+D G   TH  P+++ + + +A+ R+DL G+ LT+YL ++++ R
Sbjct:    5 EETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQ-AVLSLYASGRTT---------GIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTER 198          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACTC_BOVIN (Actin, alpha cardiac muscle 1 OS=Bos taurus GN=ACTC1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.038e-15
Identity = 52/204 (25.49%), Postives = 93/204 (45.59%), Query Frame = 1
Query:   34 EMSNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            E +  +V DNG GL+KAG  G+  P    P+ + RP      +      +   ++  S      +  PI+ G + N D    IW H F               TE      + +    +++FE FN  +++VA   +++ LY + R            +V+D G   TH  P+++ + + +A+ R+DL G+ LT+YL ++++ R
Sbjct:    5 EETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQ-AVLSLYASGRTT---------GIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTER 198          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACTA_CHICK (Actin, aortic smooth muscle OS=Gallus gallus GN=ACTA2 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.038e-15
Identity = 54/204 (26.47%), Postives = 92/204 (45.10%), Query Frame = 1
Query:   34 EMSNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            E S  +V DNG GL KAG  G+  P    P+ + RP      +      +   ++  S      +  PI+ G + N D    IW H F               TE      + +    +++FE FN  +++VA   +++ LY + R            +V+D G   TH  P+++ + + +A+ R+DL G+ LT+YL +++S R
Sbjct:    5 EDSTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQ-AVLSLYASGRTT---------GIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILSER 198          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACT2_XENTR (Actin, alpha sarcomeric/cardiac OS=Xenopus tropicalis PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.038e-15
Identity = 52/204 (25.49%), Postives = 93/204 (45.59%), Query Frame = 1
Query:   34 EMSNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            E +  +V DNG GL+KAG  G+  P    P+ + RP      +      +   ++  S      +  PI+ G + N D    IW H F               TE      + +    +++FE FN  +++VA   +++ LY + R            +V+D G   TH  P+++ + + +A+ R+DL G+ LT+YL ++++ R
Sbjct:    5 EETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQ-AVLSLYASGRTT---------GIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTER 198          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACT1_NAEGR (Actin-1 OS=Naegleria gruberi GN=ACT1 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.038e-15
Identity = 53/204 (25.98%), Postives = 92/204 (45.10%), Query Frame = 1
Query:   34 EMSNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            E    +V+DNG G+ KAG  GE  P    P+ + RPL     +      A   ++  S     A+  PI+ G + N D    IW H F               TE      + +    +++FE F   +++VA   +++ LY + R            +V+D G   +H  P+++ + + +A+ R+DL G+ LT+YL +++  R
Sbjct:    2 EEHQALVIDNGSGMCKAGFAGEDAPRAVFPSLIGRPLQRSIMVGMGNKDAYVGDEAMSKKGILALKYPIEHGIITNWDDMEKIWHHTFYNELRVGPEEHGVLLTEAPLNPKANREKMTQIMFETFRVPAMYVAIQ-AVLSLYASGRTT---------GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILMER 195          
The following BLAST results are available for this feature:
BLAST of FC921419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 369
Match NameE-valueIdentityDescription
ACTG_CEPAC2.326e-1526.24Actin, gamma OS=Cephalosporium acremonium GN=ACT P... [more]
ACT_HISCA3.038e-1530.05Actin OS=Histriculus cavicola PE=3 SV=2[more]
ACTC_RAT3.038e-1525.49Actin, alpha cardiac muscle 1 OS=Rattus norvegicus... [more]
ACTC_MOUSE3.038e-1525.49Actin, alpha cardiac muscle 1 OS=Mus musculus GN=A... [more]
ACTC_HUMAN3.038e-1525.49Actin, alpha cardiac muscle 1 OS=Homo sapiens GN=A... [more]
ACTC_CHICK3.038e-1525.49Actin, alpha cardiac muscle 1 OS=Gallus gallus GN=... [more]
ACTC_BOVIN3.038e-1525.49Actin, alpha cardiac muscle 1 OS=Bos taurus GN=ACT... [more]
ACTA_CHICK3.038e-1526.47Actin, aortic smooth muscle OS=Gallus gallus GN=AC... [more]
ACT2_XENTR3.038e-1525.49Actin, alpha sarcomeric/cardiac OS=Xenopus tropica... [more]
ACT1_NAEGR3.038e-1525.98Actin-1 OS=Naegleria gruberi GN=ACT1 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC32104G05EF RVDevelopN Citrus clementina cDNA clone C32104G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921419 ID=FC921419; Name=FC921419; organism=Citrus clementina; type=EST; length=671bp
GGTAACAATTCCAGCACCCACATCTCATCCTCGGAGATGTCAAATATCGT
CGTTCTAGACAATGGTGGCGGCCTCATAAAAGCGGGTCATGGCGGCGAGC
GTGACCCCGCCGTCACAATACCCAACTGCATGTACCGTCCACTCTCCTCC
AAAAAATTCATCCACCCATCTCCCACCGCCGCCTCCGCCACCGAAGACCT
GACCTCTGCCGCCGTCCACCGCCCCATTGACCGCGGTTACCTTATAAATA
GCGACCTCCAGCGCGACATCTGGGCCCACCTCTTCTCCTCTCTCCTCCAC
ATCAGCCCCTCCGCCTCCTCTCTCCTACTCACCGAACCCCTCTTCGCGCT
TCCCTCTATCCAACGCGCCACCGACGAGCTCGTCTTCGAGGACTTCAACT
TCAAGTCGCTCTTCGTTGCCGACCCGCCGTCGTTAGTTCACCTCTACGAG
GCCAGCCGGCGACCGTACGGGCTGTTGTCGGAGACGCAGTGTAGTCTTGT
GGTTGACTGTGGGTTCAGTTTCACGCACGCGGCGCCGGTGTTTCAGAATT
TCACGGTGAATTACGCCGTTAAAAGGATTGACTTGNGCGGTAAGGCGTTG
ACTAATTACTTGAAGGAGCTGGTATCGTATCGCGCTATTACGTTATGGAT
GAGACTTTCATTATCGATGAT
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