FC921419

Overview
NameFC921419
Unique NameFC921419
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACT24_DICDI (Putative actin-24 OS=Dictyostelium discoideum GN=act24 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.661e-11
Identity = 46/196 (23.47%), Postives = 87/196 (44.39%), Query Frame = 1
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSAA----VHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELV 624
            +V+DNG G+ KAG  G   P    P+ + RP  +   +      +   ++  S      +  P++RG + N +   +IW H F               TEP     + +    +++FE FN  +++VA   +++ LY + R            +++D G   ++  PV++  T   ++ R+ L G  LT+Y+  L+
Sbjct:    9 IVIDNGSGMCKAGFAGYDAPHAVFPSIVGRPRHTGVMVGMGQKDSYIGDEAQSKRDILNLKFPVERGIITNWNDMEEIWHHTFYNELRVAPEEHPVLLTEPPLNSKANREKMPQIMFETFNTPAMYVA-IQAVLSLYASGR---------ATGVILDSGDGVSYTVPVYEGNTFPLSITRLHLAGGDLTDYMSRLL 194          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ARP3_ACACA (Actin-related protein 3 OS=Acanthamoeba castellanii GN=ARP3 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.475e-11
Identity = 53/213 (24.88%), Postives = 83/213 (38.97%), Query Frame = 1
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCM----------------YRPLSSKKFIHPSP--TAASATEDLTSAAVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            VV+DNG G  K G+ G  +P   IP  +                + P ++ K I          A E+     +  P+  G + N       W H                 TEP    P  +  T E++FE FN   L++A    L     AS     +  +T    V+D G   TH  PV + + +  ++K I L G+ +TN++ +L+  R
Sbjct:    9 VVIDNGTGYTKMGYAGNTEPQYIIPTAIATKGIAEDPRCRARRWWCPWAAGKNIADLDFFIGDEAYENSKVYQITMPVRHGQVENWTHMEQFWEHCIFKYLRCEPEDHHFLLTEPPLNAPENREYTAEIMFETFNVPGLYIAVQAVLA--LAASWTSKQVTEKTLTGTVIDSGDGVTHVIPVAEGYVIGSSIKHIPLAGRDITNFVLQLLRER 219          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ARPM1_MOUSE (Actin-related protein M1 homolog OS=Mus musculus GN=Arpm1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.928e-11
Identity = 50/203 (24.63%), Postives = 91/203 (44.83%), Query Frame = 1
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSP----TAASATEDLTSAAVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYRAITL 645
            VV+DNG G+IKAG  G R+P    PN + R   SK     S         A E  +  ++  P++RG + +      +W H++               TEP     + ++   E+ FE+    + +++   +++ L+ A              LV++ G   T   P+F+ + +++ VK++++ G  LT+YL  L+    I L
Sbjct:    8 VVIDNGSGMIKAGLAGTREPQFVYPNILGR---SKGHTADSRQELCVGDQAQERRSFLSISYPVERGLISSWGDMEIMWKHIYDYNLNLNASDGPVLVTEPALNPLADRQHISEVFFENLGVPAFYMS-AQAVLALFAAG---------FTTGLVLNSGAGITQCVPIFEGYCLSHGVKQLNVAGSDLTSYLMMLLKGDGIML 197          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ARP3_RAT (Actin-related protein 3 OS=Rattus norvegicus GN=Actr3 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.928e-11
Identity = 50/207 (24.15%), Postives = 81/207 (39.13%), Query Frame = 1
Query:   52 VLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLT-----------SAAVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYRAI 639
            V+D G G  K G+ G  +P   IP+C+    S+K             +DL            + A   PI  G + + DL       +                TEP    P  +  T E++FE FN   L++A    L      + R  G    T    V+D G   TH  PV + + +   +K I + G+ +T ++++L+  R +
Sbjct:    9 VVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIEKPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVG--ERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREV 213          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ARP3_PONAB (Actin-related protein 3 OS=Pongo abelii GN=ACTR3 PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 5.928e-11
Identity = 50/207 (24.15%), Postives = 81/207 (39.13%), Query Frame = 1
Query:   52 VLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLT-----------SAAVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYRAI 639
            V+D G G  K G+ G  +P   IP+C+    S+K             +DL            + A   PI  G + + DL       +                TEP    P  +  T E++FE FN   L++A    L      + R  G    T    V+D G   TH  PV + + +   +K I + G+ +T ++++L+  R +
Sbjct:    9 VVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIEKPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVG--ERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREV 213          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ARP3_MOUSE (Actin-related protein 3 OS=Mus musculus GN=Actr3 PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 5.928e-11
Identity = 50/207 (24.15%), Postives = 81/207 (39.13%), Query Frame = 1
Query:   52 VLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLT-----------SAAVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYRAI 639
            V+D G G  K G+ G  +P   IP+C+    S+K             +DL            + A   PI  G + + DL       +                TEP    P  +  T E++FE FN   L++A    L      + R  G    T    V+D G   TH  PV + + +   +K I + G+ +T ++++L+  R +
Sbjct:    9 VVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIEKPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVG--ERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREV 213          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ARP3_HUMAN (Actin-related protein 3 OS=Homo sapiens GN=ACTR3 PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 5.928e-11
Identity = 50/207 (24.15%), Postives = 81/207 (39.13%), Query Frame = 1
Query:   52 VLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLT-----------SAAVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYRAI 639
            V+D G G  K G+ G  +P   IP+C+    S+K             +DL            + A   PI  G + + DL       +                TEP    P  +  T E++FE FN   L++A    L      + R  G    T    V+D G   TH  PV + + +   +K I + G+ +T ++++L+  R +
Sbjct:    9 VVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIEKPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVG--ERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREV 213          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ARP3_BOVIN (Actin-related protein 3 OS=Bos taurus GN=ACTR3 PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 5.928e-11
Identity = 50/207 (24.15%), Postives = 81/207 (39.13%), Query Frame = 1
Query:   52 VLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLT-----------SAAVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYRAI 639
            V+D G G  K G+ G  +P   IP+C+    S+K             +DL            + A   PI  G + + DL       +                TEP    P  +  T E++FE FN   L++A    L      + R  G    T    V+D G   TH  PV + + +   +K I + G+ +T ++++L+  R +
Sbjct:    9 VVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIEKPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVG--ERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREV 213          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACT1_SOYBN (Actin-1 OS=Glycine max GN=SAC1 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.928e-11
Identity = 50/202 (24.75%), Postives = 89/202 (44.06%), Query Frame = 1
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSAAVHR-------PIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            +V DNG G++KAG  G+  P    P+ + RP  +   +      A   ++   A V R       PI+ G + N D    IW H F               TE        +     ++FE F   ++ VA   +++ LY + R            +V+D G   +H  P+++ + + +A+ R+DL G+ LT++L ++++ R
Sbjct:   10 LVCDNGTGMVKAGLAGDDAPRAVFPSIVGRPRHTXVVVGMGQKDAYVGDE---AQVQRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKYNREKMXRVMFETFGAPAVCVA-VLAVLSLYASGRTT---------GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDFLMKILTQR 198          
The following BLAST results are available for this feature:
BLAST of FC921419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 369
Match NameE-valueIdentityDescription
ACT24_DICDI2.661e-1123.47Putative actin-24 OS=Dictyostelium discoideum GN=a... [more]
ARP3_ACACA3.475e-1124.88Actin-related protein 3 OS=Acanthamoeba castellani... [more]
ARPM1_MOUSE5.928e-1124.63Actin-related protein M1 homolog OS=Mus musculus G... [more]
ARP3_RAT5.928e-1124.15Actin-related protein 3 OS=Rattus norvegicus GN=Ac... [more]
ARP3_PONAB5.928e-1124.15Actin-related protein 3 OS=Pongo abelii GN=ACTR3 P... [more]
ARP3_MOUSE5.928e-1124.15Actin-related protein 3 OS=Mus musculus GN=Actr3 P... [more]
ARP3_HUMAN5.928e-1124.15Actin-related protein 3 OS=Homo sapiens GN=ACTR3 P... [more]
ARP3_BOVIN5.928e-1124.15Actin-related protein 3 OS=Bos taurus GN=ACTR3 PE=... [more]
ACT1_SOYBN5.928e-1124.75Actin-1 OS=Glycine max GN=SAC1 PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC32104G05EF RVDevelopN Citrus clementina cDNA clone C32104G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921419 ID=FC921419; Name=FC921419; organism=Citrus clementina; type=EST; length=671bp
GGTAACAATTCCAGCACCCACATCTCATCCTCGGAGATGTCAAATATCGT
CGTTCTAGACAATGGTGGCGGCCTCATAAAAGCGGGTCATGGCGGCGAGC
GTGACCCCGCCGTCACAATACCCAACTGCATGTACCGTCCACTCTCCTCC
AAAAAATTCATCCACCCATCTCCCACCGCCGCCTCCGCCACCGAAGACCT
GACCTCTGCCGCCGTCCACCGCCCCATTGACCGCGGTTACCTTATAAATA
GCGACCTCCAGCGCGACATCTGGGCCCACCTCTTCTCCTCTCTCCTCCAC
ATCAGCCCCTCCGCCTCCTCTCTCCTACTCACCGAACCCCTCTTCGCGCT
TCCCTCTATCCAACGCGCCACCGACGAGCTCGTCTTCGAGGACTTCAACT
TCAAGTCGCTCTTCGTTGCCGACCCGCCGTCGTTAGTTCACCTCTACGAG
GCCAGCCGGCGACCGTACGGGCTGTTGTCGGAGACGCAGTGTAGTCTTGT
GGTTGACTGTGGGTTCAGTTTCACGCACGCGGCGCCGGTGTTTCAGAATT
TCACGGTGAATTACGCCGTTAAAAGGATTGACTTGNGCGGTAAGGCGTTG
ACTAATTACTTGAAGGAGCTGGTATCGTATCGCGCTATTACGTTATGGAT
GAGACTTTCATTATCGATGAT
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