FC921419

Overview
NameFC921419
Unique NameFC921419
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5726 contig Ccv1_Contig5726:64..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACT_YEAST (Actin OS=Saccharomyces cerevisiae GN=ACT1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.967e-15
Identity = 53/199 (26.63%), Postives = 90/199 (45.23%), Query Frame = 1
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            +V+DNG G+ KAG  G+  P    P+ + RP      +      +   ++  S      +  PI+ G + N D    IW H F               TE      S +    +++FE FN  + +V+   +++ LY + R            +V+D G   TH  P++  F++ +A+ RIDL G+ LT+YL +++S R
Sbjct:    8 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGIMVGMGQKDSYVGDEAQSKRGILTLRYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKSNREKMTQIMFETFNVPAFYVSIQ-AVLSLYSSGRTT---------GIVLDSGDGVTHVVPIYAGFSLPHAILRIDLAGRDLTDYLMKILSER 196          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACT_SACBA (Actin OS=Saccharomyces bayanus GN=ACT1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.967e-15
Identity = 53/199 (26.63%), Postives = 90/199 (45.23%), Query Frame = 1
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            +V+DNG G+ KAG  G+  P    P+ + RP      +      +   ++  S      +  PI+ G + N D    IW H F               TE      S +    +++FE FN  + +V+   +++ LY + R            +V+D G   TH  P++  F++ +A+ RIDL G+ LT+YL +++S R
Sbjct:    8 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGIMVGMGQKDSYVGDEAQSKRGILTLRYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKSNREKMTQIMFETFNVPAFYVSIQ-AVLSLYSSGRTT---------GIVLDSGDGVTHVVPIYAGFSLPHAILRIDLAGRDLTDYLMKILSER 196          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACT_CANGA (Actin OS=Candida glabrata GN=ACT1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.967e-15
Identity = 53/199 (26.63%), Postives = 90/199 (45.23%), Query Frame = 1
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            +V+DNG G+ KAG  G+  P    P+ + RP      +      +   ++  S      +  PI+ G + N D    IW H F               TE      S +    +++FE FN  + +V+   +++ LY + R            +V+D G   TH  P++  F++ +A+ RIDL G+ LT+YL +++S R
Sbjct:    8 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGIMVGMGQKDSYVGDEAQSKRGILTLRYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKSNREKMTQIMFETFNVPAFYVSIQ-AVLSLYSSGRTT---------GIVLDSGDGVTHVVPIYAGFSLPHAILRIDLAGRDLTDYLMKILSER 196          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACTS_OREMO (Actin, alpha skeletal muscle OS=Oreochromis mossambicus GN=acta1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.967e-15
Identity = 52/199 (26.13%), Postives = 91/199 (45.73%), Query Frame = 1
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            +V DNG GL+KAG  G+  P    P+ + RP      +      +   ++  S      +  PI+ G + N D    IW H F               TE      + +    +++FE FN  +++VA   +++ LY + R            +V+D G   TH  PV++ + + +A+ R+DL G+ LT+YL ++++ R
Sbjct:   10 LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQ-AVLSLYASGRTT---------GIVLDAGDGVTHNVPVYEGYALPHAIMRLDLAGRDLTDYLMKILTER 198          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACTS_CYPCA (Actin, alpha skeletal muscle OS=Cyprinus carpio GN=acta1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.967e-15
Identity = 52/199 (26.13%), Postives = 91/199 (45.73%), Query Frame = 1
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            +V DNG GL+KAG  G+  P    P+ + RP      +      +   ++  S      +  PI+ G + N D    IW H F               TE      + +    +++FE FN  +++VA   +++ LY + R            +V+D G   TH  PV++ + + +A+ R+DL G+ LT+YL ++++ R
Sbjct:   10 LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQ-AVLSLYASGRTT---------GIVLDAGDGVTHNVPVYEGYALPHAIMRLDLAGRDLTDYLMKILTER 198          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACTS_CARAU (Actin, alpha skeletal muscle OS=Carassius auratus GN=acta1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.967e-15
Identity = 52/199 (26.13%), Postives = 91/199 (45.73%), Query Frame = 1
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            +V DNG GL+KAG  G+  P    P+ + RP      +      +   ++  S      +  PI+ G + N D    IW H F               TE      + +    +++FE FN  +++VA   +++ LY + R            +V+D G   TH  PV++ + + +A+ R+DL G+ LT+YL ++++ R
Sbjct:   10 LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQ-AVLSLYASGRTT---------GIVLDAGDGVTHNVPVYEGYALPHAIMRLDLAGRDLTDYLMKILTER 198          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACTSA_TAKRU (Actin, alpha skeletal muscle A OS=Takifugu rubripes GN=acta1a PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.967e-15
Identity = 52/199 (26.13%), Postives = 91/199 (45.73%), Query Frame = 1
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            +V DNG GL+KAG  G+  P    P+ + RP      +      +   ++  S      +  PI+ G + N D    IW H F               TE      + +    +++FE FN  +++VA   +++ LY + R            +V+D G   TH  PV++ + + +A+ R+DL G+ LT+YL ++++ R
Sbjct:   10 LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQ-AVLSLYASGRTT---------GIVLDAGDGVTHNVPVYEGYALPHAIMRLDLAGRDLTDYLMKILTER 198          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACTM_MOLOC (Actin, larval muscle-type OS=Molgula oculata PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.967e-15
Identity = 52/207 (25.12%), Postives = 92/207 (44.44%), Query Frame = 1
Query:   25 SSSEMSNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            S  E    +V DNG GL+KAG  G+  P    P+ + RP      +      +   ++  S      +  PI+ G + N D    IW H F               TE      + +    +++FE FN  +++VA   +++ LY + R            +V+D G   +H  P+++ + + +A+ R+DL G+ LT YL ++++ R
Sbjct:    3 SEEEDQTAIVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRIAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQ-AVLSLYASGRTT---------GIVLDSGDGISHNVPIYEGYALPHAIARMDLAGRDLTEYLTKILTER 199          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACT3_XENLA (Actin, alpha sarcomeric/skeletal OS=Xenopus laevis PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.967e-15
Identity = 51/199 (25.63%), Postives = 92/199 (46.23%), Query Frame = 1
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            +V DNG GL+KAG  G+  P    P+ + RP      +      +   ++  S      +  PI+ G + N D    IW H F               TE      + +    +++FE FN  +++VA   +++ LY + R            +V+D G   TH  P+++ + + +A++R+DL G+ LT+YL ++++ R
Sbjct:   10 LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQ-AVLSLYASGRTT---------GIVLDSGDGVTHNVPIYEGYALPHAIQRLDLAGRDLTDYLMKILTER 198          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACT_EXODE (Actin OS=Exophiala dermatitidis PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.181e-15
Identity = 52/199 (26.13%), Postives = 90/199 (45.23%), Query Frame = 1
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            +V+DNG G+ KAG  G+  P    P+ + RP      I      +   ++  S      +  PI+ G + N D    IW H F               TE      S +    ++VFE FN  + +V+   +++ LY + R            +V+D G   TH  P+++ F + +A+ R+D+ G+ LT+YL ++++ R
Sbjct:    8 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQ-AVLSLYASGRTT---------GIVLDSGDGVTHVVPIYEGFALPHAISRVDMAGRDLTDYLMKILAER 196          
The following BLAST results are available for this feature:
BLAST of FC921419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 369
Match NameE-valueIdentityDescription
ACT_YEAST3.967e-1526.63Actin OS=Saccharomyces cerevisiae GN=ACT1 PE=1 SV=... [more]
ACT_SACBA3.967e-1526.63Actin OS=Saccharomyces bayanus GN=ACT1 PE=3 SV=1[more]
ACT_CANGA3.967e-1526.63Actin OS=Candida glabrata GN=ACT1 PE=3 SV=1[more]
ACTS_OREMO3.967e-1526.13Actin, alpha skeletal muscle OS=Oreochromis mossam... [more]
ACTS_CYPCA3.967e-1526.13Actin, alpha skeletal muscle OS=Cyprinus carpio GN... [more]
ACTS_CARAU3.967e-1526.13Actin, alpha skeletal muscle OS=Carassius auratus ... [more]
ACTSA_TAKRU3.967e-1526.13Actin, alpha skeletal muscle A OS=Takifugu rubripe... [more]
ACTM_MOLOC3.967e-1525.12Actin, larval muscle-type OS=Molgula oculata PE=3 ... [more]
ACT3_XENLA3.967e-1525.63Actin, alpha sarcomeric/skeletal OS=Xenopus laevis... [more]
ACT_EXODE5.181e-1526.13Actin OS=Exophiala dermatitidis PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC32104G05EF RVDevelopN Citrus clementina cDNA clone C32104G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921419 ID=FC921419; Name=FC921419; organism=Citrus clementina; type=EST; length=671bp
GGTAACAATTCCAGCACCCACATCTCATCCTCGGAGATGTCAAATATCGT
CGTTCTAGACAATGGTGGCGGCCTCATAAAAGCGGGTCATGGCGGCGAGC
GTGACCCCGCCGTCACAATACCCAACTGCATGTACCGTCCACTCTCCTCC
AAAAAATTCATCCACCCATCTCCCACCGCCGCCTCCGCCACCGAAGACCT
GACCTCTGCCGCCGTCCACCGCCCCATTGACCGCGGTTACCTTATAAATA
GCGACCTCCAGCGCGACATCTGGGCCCACCTCTTCTCCTCTCTCCTCCAC
ATCAGCCCCTCCGCCTCCTCTCTCCTACTCACCGAACCCCTCTTCGCGCT
TCCCTCTATCCAACGCGCCACCGACGAGCTCGTCTTCGAGGACTTCAACT
TCAAGTCGCTCTTCGTTGCCGACCCGCCGTCGTTAGTTCACCTCTACGAG
GCCAGCCGGCGACCGTACGGGCTGTTGTCGGAGACGCAGTGTAGTCTTGT
GGTTGACTGTGGGTTCAGTTTCACGCACGCGGCGCCGGTGTTTCAGAATT
TCACGGTGAATTACGCCGTTAAAAGGATTGACTTGNGCGGTAAGGCGTTG
ACTAATTACTTGAAGGAGCTGGTATCGTATCGCGCTATTACGTTATGGAT
GAGACTTTCATTATCGATGAT
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