FC921419

Overview
NameFC921419
Unique NameFC921419
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5726 contig Ccv1_Contig5726:64..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACT2_OXYNO (Actin, cytoplasmic OS=Oxytricha nova GN=MIC-ACT-1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.767e-15
Identity = 53/197 (26.90%), Postives = 89/197 (45.18%), Query Frame = 1
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAA----SATEDLTSAAVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVS 627
            VV+DNG G++KAG  GE  P    P+ + RP +    I     +      A +      +  PI+ G + + +    IW H F               TE      + +    +++FE FN  +L+VA   +++ LY A R            +V D G   TH  P+++ F++ +AV RI L G+ LT ++ +L++
Sbjct:    7 VVVDNGSGVVKAGFSGEDAPRAVFPSIIGRPKNVSALIGVDSASEYIGDEAQQKRGVLKIFYPIEHGIIKDWEDMEKIWNHTFYVELRVQPDEHPVLLTEAPLNPKTNREKMTQIMFETFNVPALYVAIQ-AVLSLYSAGRTT---------GIVCDAGDGVTHTVPIYEGFSIPHAVSRIQLAGRDLTTFMAKLLT 193          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACT1_TRYBB (Actin A OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.767e-15
Identity = 47/209 (22.49%), Postives = 95/209 (45.45%), Query Frame = 1
Query:   28 SSEMSNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYRAIT 642
            S E    +V DNG G++K+G  G+  P    P+ + RP + +  +  +       ++  +     A+  PI+ G + N D    +W H F               TE        +    +++FE F   +++V    +++ LY + R            +V+D G   TH  P+++ +++ +A++R+D+ G+ LT YL +++ +  +T
Sbjct:    2 SDEEQTAIVCDNGSGMVKSGFSGDDAPRHVFPSIVGRPKNEQAMMGSANKKLFVGDEAQAKRGVLALKYPIEHGIVTNWDDMEKVWHHTFYNELRVNPESHNVLLTEAPMNPKQNREKMTQIMFETFGVPAMYVGIQ-AVLSLYSSGRTT---------GIVLDAGDGVTHTVPIYEGYSLPHAIRRVDMAGRDLTEYLMKILMHTGMT 200          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACT1_OXYNO (Actin, cytoplasmic OS=Oxytricha nova PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.767e-15
Identity = 53/197 (26.90%), Postives = 89/197 (45.18%), Query Frame = 1
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAA----SATEDLTSAAVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVS 627
            VV+DNG G++KAG  GE  P    P+ + RP +    I     +      A +      +  PI+ G + + +    IW H F               TE      + +    +++FE FN  +L+VA   +++ LY A R            +V D G   TH  P+++ F++ +AV RI L G+ LT ++ +L++
Sbjct:    7 VVVDNGSGVVKAGFSGEDAPRAVFPSIIGRPKNVSALIGVDSASEYIGDEAQQKRGVLKIFYPIEHGIIKDWEDMEKIWNHTFYVELRVQPDEHPVLLTEAPLNPKTNREKMTQIMFETFNVPALYVAIQ-AVLSLYSAGRTT---------GIVCDAGDGVTHTVPIYEGFSIPHAVSRIQLAGRDLTTFMAKLLT 193          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACTS_ATRMM (Actin, alpha skeletal muscle OS=Atractaspis microlepidota microlepidota GN=ACTA1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.838e-15
Identity = 51/199 (25.63%), Postives = 91/199 (45.73%), Query Frame = 1
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            +V DNG GL+KAG  G+  P    P+ + RP      +      +   ++  S      +  PI+ G + N D    IW H F               TE      + +    +++FE FN  +++VA   +++ LY + R            +V+D G   TH  P+++ + + +A+ R+DL G+ LT+YL ++++ R
Sbjct:   10 LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQ-AVLPLYASGRTT---------GIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTER 198          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACTSB_TAKRU (Actin, alpha skeletal muscle B OS=Takifugu rubripes GN=acta1b PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.838e-15
Identity = 51/199 (25.63%), Postives = 91/199 (45.73%), Query Frame = 1
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            +V DNG GL+KAG  G+  P    P+ + RP      +      +   ++  S      +  PI+ G + N D    IW H F               TE      + +    +++FE FN  +++VA   +++ LY + R            +V+D G   TH  P+++ + + +A+ R+DL G+ LT+YL ++++ R
Sbjct:   10 LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQ-AVLSLYASGRTT---------GIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTER 198          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACTM_CIOSA (Actin, muscle OS=Ciona savignyi PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.838e-15
Identity = 51/206 (24.76%), Postives = 93/206 (45.15%), Query Frame = 1
Query:   28 SSEMSNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            S E    +V DNG GL+K+G  G+  P    P+ + RP      +      +   ++  S      +  PI+ G + N D    IW H F               TE      + +    +++FE FN  +++VA   +++ LY + R            +V+D G   +H  P+++ + + +A+ R+DL G+ LT+YL ++++ R
Sbjct:    4 SEEDQTALVCDNGSGLVKSGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQ-AVLSLYASGRTT---------GIVMDAGDGVSHNVPIYEGYALPHAIARLDLAGRDLTDYLMKILTER 199          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACT8_ARATH (Actin-8 OS=Arabidopsis thaliana GN=ACT8 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 8.838e-15
Identity = 51/199 (25.63%), Postives = 93/199 (46.73%), Query Frame = 1
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            +V DNG G++KAG  G+  P    P+ + RP      +  +   A   ++  S      +  PI+ G + N D    IW H F               TE      + +    +++FE FN  +++VA   +++ LY + R            +V+D G   +H  P+++ F++ +A+ R+DL G+ LT+YL ++++ R
Sbjct:   10 IVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSKRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQ-AVLSLYASGRTT---------GIVLDSGDGVSHTVPIYEGFSLPHAILRLDLAGRDLTDYLMKILTER 198          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACT2_ARATH (Actin-2 OS=Arabidopsis thaliana GN=ACT2 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.838e-15
Identity = 51/199 (25.63%), Postives = 93/199 (46.73%), Query Frame = 1
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            +V DNG G++KAG  G+  P    P+ + RP      +  +   A   ++  S      +  PI+ G + N D    IW H F               TE      + +    +++FE FN  +++VA   +++ LY + R            +V+D G   +H  P+++ F++ +A+ R+DL G+ LT+YL ++++ R
Sbjct:   10 IVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSKRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQ-AVLSLYASGRTT---------GIVLDSGDGVSHTVPIYEGFSLPHAILRLDLAGRDLTDYLMKILTER 198          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACT_VOLCA (Actin OS=Volvox carteri PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.154e-14
Identity = 50/199 (25.13%), Postives = 91/199 (45.73%), Query Frame = 1
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            +V DNG G++KAG  G+  P    P+ + RP  +   +      +   ++  S      +  PI+ G + N D    IW H F               TE      + +    +++FE FN  +++VA   +++ LY + R            +V+D G   TH  P+++ + + +A+ R+DL G+ LT+YL +++  R
Sbjct:   10 LVCDNGSGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRGILTLRYPIEHGIVTNWDDMEKIWHHTFFNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQ-AVLSLYASGRTT---------GIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILMER 198          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACT_SCHPO (Actin OS=Schizosaccharomyces pombe GN=act1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.154e-14
Identity = 52/202 (25.74%), Postives = 90/202 (44.55%), Query Frame = 1
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYRAIT 642
            +V+DNG G+ KAG  G+  P    P+ + RP      +      +   ++  S      +  PI+ G + N D    IW H F               TE      S +    +++FE FN  + +VA   +++ LY + R            +V+D G   TH  P+++ + + +A+ R+DL G+ LT+YL +++  R  T
Sbjct:    8 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQ-AVLSLYASGRTT---------GIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYT 199          
The following BLAST results are available for this feature:
BLAST of FC921419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 369
Match NameE-valueIdentityDescription
ACT2_OXYNO6.767e-1526.90Actin, cytoplasmic OS=Oxytricha nova GN=MIC-ACT-1 ... [more]
ACT1_TRYBB6.767e-1522.49Actin A OS=Trypanosoma brucei brucei PE=3 SV=1[more]
ACT1_OXYNO6.767e-1526.90Actin, cytoplasmic OS=Oxytricha nova PE=3 SV=1[more]
ACTS_ATRMM8.838e-1525.63Actin, alpha skeletal muscle OS=Atractaspis microl... [more]
ACTSB_TAKRU8.838e-1525.63Actin, alpha skeletal muscle B OS=Takifugu rubripe... [more]
ACTM_CIOSA8.838e-1524.76Actin, muscle OS=Ciona savignyi PE=2 SV=1[more]
ACT8_ARATH8.838e-1525.63Actin-8 OS=Arabidopsis thaliana GN=ACT8 PE=1 SV=2[more]
ACT2_ARATH8.838e-1525.63Actin-2 OS=Arabidopsis thaliana GN=ACT2 PE=1 SV=1[more]
ACT_VOLCA1.154e-1425.13Actin OS=Volvox carteri PE=3 SV=1[more]
ACT_SCHPO1.154e-1425.74Actin OS=Schizosaccharomyces pombe GN=act1 PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionC32104G05EF RVDevelopN Citrus clementina cDNA clone C32104G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921419 ID=FC921419; Name=FC921419; organism=Citrus clementina; type=EST; length=671bp
GGTAACAATTCCAGCACCCACATCTCATCCTCGGAGATGTCAAATATCGT
CGTTCTAGACAATGGTGGCGGCCTCATAAAAGCGGGTCATGGCGGCGAGC
GTGACCCCGCCGTCACAATACCCAACTGCATGTACCGTCCACTCTCCTCC
AAAAAATTCATCCACCCATCTCCCACCGCCGCCTCCGCCACCGAAGACCT
GACCTCTGCCGCCGTCCACCGCCCCATTGACCGCGGTTACCTTATAAATA
GCGACCTCCAGCGCGACATCTGGGCCCACCTCTTCTCCTCTCTCCTCCAC
ATCAGCCCCTCCGCCTCCTCTCTCCTACTCACCGAACCCCTCTTCGCGCT
TCCCTCTATCCAACGCGCCACCGACGAGCTCGTCTTCGAGGACTTCAACT
TCAAGTCGCTCTTCGTTGCCGACCCGCCGTCGTTAGTTCACCTCTACGAG
GCCAGCCGGCGACCGTACGGGCTGTTGTCGGAGACGCAGTGTAGTCTTGT
GGTTGACTGTGGGTTCAGTTTCACGCACGCGGCGCCGGTGTTTCAGAATT
TCACGGTGAATTACGCCGTTAAAAGGATTGACTTGNGCGGTAAGGCGTTG
ACTAATTACTTGAAGGAGCTGGTATCGTATCGCGCTATTACGTTATGGAT
GAGACTTTCATTATCGATGAT
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