FC921419

Overview
NameFC921419
Unique NameFC921419
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5726 contig Ccv1_Contig5726:64..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACT2_HALRO (Actin, muscle 2/4/4A OS=Halocynthia roretzi GN=MA2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.154e-14
Identity = 50/204 (24.51%), Postives = 93/204 (45.59%), Query Frame = 1
Query:   34 EMSNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            E +  +V DNG GL+K+G  G+  P    P+ + RP      +      +   ++  S      +  PI+ G + N D    IW H F               TE      + +    +++FE FN  +++VA   +++ LY + R            +V+D G   +H  P+++ + + +A+ R+DL G+ LT+YL ++++ R
Sbjct:    6 EDTTAIVCDNGSGLVKSGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQ-AVLSLYASGRTT---------GIVLDAGDGVSHNVPIYEGYALPHAIARLDLAGRDLTDYLMKILTER 199          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACT_COLSC (Actin OS=Coleochaete scutata PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.508e-14
Identity = 50/208 (24.04%), Postives = 95/208 (45.67%), Query Frame = 1
Query:   22 ISSSEMSNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            ++  E  + +V DNG G++KAG  G+  P    P+ + RP      +      A   ++  S      +  PI+ G + N D    IW H F               TE      + +    +++FE F+  +++VA   +++ LY + R            +V+D G   TH  P+++ + + +A+ R+DL G+ LT+Y+ ++++ R
Sbjct:    1 MADGEEVSALVCDNGSGMVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFSVPAMYVAIQ-AVLSLYASGRTT---------GIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTER 198          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACT_CANAL (Actin OS=Candida albicans GN=ACT1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.508e-14
Identity = 51/199 (25.63%), Postives = 89/199 (44.72%), Query Frame = 1
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            +++DNG G+ KAG  G+  P    P+ + RP      +      +   ++  S      +  PI+ G + N D    IW H F               TE      S +    +++FE FN  + +V+   +++ LY + R            +V+D G   TH  P++  F++ + + RIDL G+ LTN+L +++S R
Sbjct:    9 LIIDNGSGMCKAGFAGDDAPRAVFPSLVGRPRHQGIMVGMGQKDSYVGDEAQSKRGILTLRYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKSNREKMTQIMFETFNVPAFYVSIQ-AVLSLYSSGRTT---------GIVLDSGDGVTHVVPIYAGFSLPHGILRIDLAGRDLTNHLSKILSER 197          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACTZ_NEUCR (Actin-like protein OS=Neurospora crassa GN=ro-4 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.508e-14
Identity = 57/201 (28.36%), Postives = 95/201 (47.26%), Query Frame = 1
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRP---------LSSKKFIHPSPTAASATEDLTSAAVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELV 624
            +VLDNG G I+AG  G+  P    P+ + RP         L  + FI     AAS    L    +  P++ G + + D    IWA+++               TEP     + +    +++FE FN  +L+ +   +++ LY + R            +V+D G   +HA PV+Q FTV  +++RID+ G+ +T YL+ L+
Sbjct:   10 IVLDNGSGTIRAGFAGDDVPKCHFPSFVGRPKHLRVLAGALEGEVFI--GQKAASELRGLLK--IRYPLEHGIVTDWDDMEKIWAYVYDEGLKTLSEEHPVLLTEPPLNPRANRDTAAQILFETFNVPALYTSIQ-AVLSLYASGRTT---------GVVLDSGDGVSHAVPVYQGFTVPNSIRRIDVAGRDVTEYLQTLL 196          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACTM_BRALA (Actin, muscle OS=Branchiostoma lanceolatum PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.508e-14
Identity = 52/204 (25.49%), Postives = 90/204 (44.12%), Query Frame = 1
Query:   34 EMSNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            E +  +V DNG GL+KAG  G+  P    P+ + RP      +      A   ++  S      +  P++ G + N D    IW H F               TE      + +    +++FE FN  +++V     L  LY + R            +V+D G   +H  P+++ + + +A+ R+DL G+ LTNYL ++++ R
Sbjct:    8 EEATPLVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDAYVGDEAQSKRGILTLKYPVEHGIVTNWDDMEKIWHHTFYNELRIAPEENPCLLTEAPLNPKANREKMTQIMFETFNSPAMYVCIQAVLC-LYASGRTT---------GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRELTNYLMKIMTDR 201          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACTBL_MOUSE (Beta-actin-like protein 2 OS=Mus musculus GN=Actbl2 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.508e-14
Identity = 54/200 (27.00%), Postives = 95/200 (47.50%), Query Frame = 1
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTE-PLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            +V+DNG G+ KAG GG+  P    P+ + RP      +          ++  S      +  PI+ G + N D    IW H F               TE PL    + ++ T +++FE FN  +++VA   +++ LY + R            +V+D G   TH  P+++ + + +A+ R+DL G+ LT+YL ++++ R
Sbjct:    9 LVVDNGSGMCKAGFGGDDAPRAVFPSMVGRPRHQGVMVGMGQKDCYVGDEAQSKRGILTLKYPIEHGVVTNWDDMEKIWYHTFYNELRVAPDEHPILLTEAPLNPKINREKMT-QIMFEAFNTPAMYVAIQ-AVLSLYASGRTT---------GIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 197          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACT3_DIPDE (Actin-3 OS=Diphyllobothrium dendriticum GN=ACT3 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.508e-14
Identity = 50/199 (25.13%), Postives = 91/199 (45.73%), Query Frame = 1
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            +V+DNG G+ KAG  G+  P    P+ + RP      +      +   ++  S      +  PI+ G + N D    IW H F               TE      + +    ++VFE FN  +++VA   +++ LY + R            +V+D G   TH  P+++ + + +A+ R+D+ G+ LT+YL ++++ R
Sbjct:   10 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIVFETFNSPAMYVAIQ-AVLSLYASGRTT---------GIVLDSGDGVTHTVPIYEGYALPHAILRLDMAGRDLTDYLMKILTER 198          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACT2_OXYTR (Actin, cytoplasmic OS=Oxytricha trifallax PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.508e-14
Identity = 56/202 (27.72%), Postives = 91/202 (45.05%), Query Frame = 1
Query:   52 VLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSAAVHR--------PIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            V+DNG G++KAG  GE  P    P+ + RP +    I       SA+E L   A  +        PI+ G + + D    IW H F               TE      + +    +++FE FN  +L+V    +++ LY A          +   +V D G   TH  P+++ F++ +AV RI L G+ LT ++ +L++ R
Sbjct:    8 VIDNGSGVVKAGFAGEDAPRAVFPSIVGRPKNVSALIGVD----SASEYLGDEAQQKRGVLKIFYPIEHGIVKDWDDMEKIWNHTFYVELRVQPDEHPILLTEAPLNPKTNREKMTQIMFETFNVPALYVVIQ-AVLSLYSAG---------STTGIVCDAGDGVTHTVPIYEGFSIPHAVSRIQLAGRDLTTFMAKLLTER 195          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACT1_ACACA (Actin-1 OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.508e-14
Identity = 50/199 (25.13%), Postives = 92/199 (46.23%), Query Frame = 1
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            +V+DNG G+ KAG  G+  P    P+ + RP  +   +      +   ++  S      +  PI+ G + N D    IW H F               TE      + +    +++FE FN  +++VA   +++ LY + R            +V+D G   TH  P+++ + + +A+ R+DL G+ LT+YL ++++ R
Sbjct:    8 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ-AVLSLYASGRTT---------GIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 196          
BLAST of FC921419 vs. ExPASy Swiss-Prot
Match: ACT_YARLI (Actin OS=Yarrowia lipolytica GN=ACT1 PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.969e-14
Identity = 51/199 (25.63%), Postives = 89/199 (44.72%), Query Frame = 1
Query:   49 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSA----AVHRPIDRGYLINSDLQRDIWAHLFXXXXXXXXXXXXXXXTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLXGKALTNYLKELVSYR 633
            +V+DNG G+ KAG  G+  P    P+ + RP      +      +   ++  S      +  PI+ G + N D    IW H F               TE      S +    ++ FE FN  + +V+   +++ LY + R            +V+D G   TH  P++  F++ +A+ R+D+ G+ LT+YL +++S R
Sbjct:    8 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLRYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPINPKSNREKMTQIFFETFNAPAFYVSIQ-AVLSLYASGR---------VTGIVLDSGDGVTHVVPIYSGFSLPHAIMRLDMAGRDLTDYLMKILSER 196          
The following BLAST results are available for this feature:
BLAST of FC921419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 369
Match NameE-valueIdentityDescription
ACT2_HALRO1.154e-1424.51Actin, muscle 2/4/4A OS=Halocynthia roretzi GN=MA2... [more]
ACT_COLSC1.508e-1424.04Actin OS=Coleochaete scutata PE=2 SV=1[more]
ACT_CANAL1.508e-1425.63Actin OS=Candida albicans GN=ACT1 PE=3 SV=1[more]
ACTZ_NEUCR1.508e-1428.36Actin-like protein OS=Neurospora crassa GN=ro-4 PE... [more]
ACTM_BRALA1.508e-1425.49Actin, muscle OS=Branchiostoma lanceolatum PE=2 SV... [more]
ACTBL_MOUSE1.508e-1427.00Beta-actin-like protein 2 OS=Mus musculus GN=Actbl... [more]
ACT3_DIPDE1.508e-1425.13Actin-3 OS=Diphyllobothrium dendriticum GN=ACT3 PE... [more]
ACT2_OXYTR1.508e-1427.72Actin, cytoplasmic OS=Oxytricha trifallax PE=3 SV=... [more]
ACT1_ACACA1.508e-1425.13Actin-1 OS=Acanthamoeba castellanii PE=3 SV=1[more]
ACT_YARLI1.969e-1425.63Actin OS=Yarrowia lipolytica GN=ACT1 PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC32104G05EF RVDevelopN Citrus clementina cDNA clone C32104G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921419 ID=FC921419; Name=FC921419; organism=Citrus clementina; type=EST; length=671bp
GGTAACAATTCCAGCACCCACATCTCATCCTCGGAGATGTCAAATATCGT
CGTTCTAGACAATGGTGGCGGCCTCATAAAAGCGGGTCATGGCGGCGAGC
GTGACCCCGCCGTCACAATACCCAACTGCATGTACCGTCCACTCTCCTCC
AAAAAATTCATCCACCCATCTCCCACCGCCGCCTCCGCCACCGAAGACCT
GACCTCTGCCGCCGTCCACCGCCCCATTGACCGCGGTTACCTTATAAATA
GCGACCTCCAGCGCGACATCTGGGCCCACCTCTTCTCCTCTCTCCTCCAC
ATCAGCCCCTCCGCCTCCTCTCTCCTACTCACCGAACCCCTCTTCGCGCT
TCCCTCTATCCAACGCGCCACCGACGAGCTCGTCTTCGAGGACTTCAACT
TCAAGTCGCTCTTCGTTGCCGACCCGCCGTCGTTAGTTCACCTCTACGAG
GCCAGCCGGCGACCGTACGGGCTGTTGTCGGAGACGCAGTGTAGTCTTGT
GGTTGACTGTGGGTTCAGTTTCACGCACGCGGCGCCGGTGTTTCAGAATT
TCACGGTGAATTACGCCGTTAAAAGGATTGACTTGNGCGGTAAGGCGTTG
ACTAATTACTTGAAGGAGCTGGTATCGTATCGCGCTATTACGTTATGGAT
GAGACTTTCATTATCGATGAT
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