FC921421 | Citrus Genome Database

Overview


Name	FC921421
Unique Name	FC921421
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	622

Libraries


Library Name	Type
RVDevelopN	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig14306	contig	Ccv1_Contig14306:1..622.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC921421 vs. ExPASy Swiss-Prot
Match: H4_OLILU (Histone H4 OS=Olisthodiscus luteus PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.292e-35
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  163 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 390
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 97

[Close]

BLAST of FC921421 vs. ExPASy Swiss-Prot
Match: H4_SOLLC (Histone H4 OS=Solanum lycopersicum PE=3 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 3.909e-35
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  163 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 390
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRT 97

[Close]

BLAST of FC921421 vs. ExPASy Swiss-Prot
Match: H4_SOLCH (Histone H4 OS=Solanum chacoense PE=3 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 3.909e-35
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  163 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 390
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRT 97

[Close]

BLAST of FC921421 vs. ExPASy Swiss-Prot
Match: H4_CAPAN (Histone H4 OS=Capsicum annuum PE=3 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 3.909e-35
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  163 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 390
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRT 97

[Close]

BLAST of FC921421 vs. ExPASy Swiss-Prot
Match: H4_XENTR (Histone H4 OS=Xenopus tropicalis GN=TGas006m08.1 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.106e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  163 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 390
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 97

[Close]

BLAST of FC921421 vs. ExPASy Swiss-Prot
Match: H4_XENLA (Histone H4 OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 5.106e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  163 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 390
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 97

[Close]

BLAST of FC921421 vs. ExPASy Swiss-Prot
Match: H4_XENBO (Histone H4 OS=Xenopus borealis PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 5.106e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  163 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 390
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 97

[Close]

BLAST of FC921421 vs. ExPASy Swiss-Prot
Match: H4_URECA (Histone H4 OS=Urechis caupo PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 5.106e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  163 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 390
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 97

[Close]

BLAST of FC921421 vs. ExPASy Swiss-Prot
Match: H4_TIGCA (Histone H4 OS=Tigriopus californicus GN=His4 PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 5.106e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  163 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 390
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 97

[Close]

BLAST of FC921421 vs. ExPASy Swiss-Prot
Match: H4_RHYAM (Histone H4 OS=Rhynchosciara americana GN=His4 PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 5.106e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  163 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 390
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 97

The following BLAST results are available for this feature:

BLAST of FC921421 vs. ExPASy Swiss-Prot

BLAST of FC921421 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107


Match Name	E-value	Identity	Description
H4_OLILU	2.292e-35	98.68	Histone H4 OS=Olisthodiscus luteus PE=1 SV=2	[more]
H4_SOLLC	3.909e-35	98.68	Histone H4 OS=Solanum lycopersicum PE=3 SV=2	[more]
H4_SOLCH	3.909e-35	98.68	Histone H4 OS=Solanum chacoense PE=3 SV=3	[more]
H4_CAPAN	3.909e-35	98.68	Histone H4 OS=Capsicum annuum PE=3 SV=3	[more]
H4_XENTR	5.106e-35	97.37	Histone H4 OS=Xenopus tropicalis GN=TGas006m08.1 P...	[more]
H4_XENLA	5.106e-35	97.37	Histone H4 OS=Xenopus laevis PE=1 SV=2	[more]
H4_XENBO	5.106e-35	97.37	Histone H4 OS=Xenopus borealis PE=3 SV=2	[more]
H4_URECA	5.106e-35	97.37	Histone H4 OS=Urechis caupo PE=3 SV=2	[more]
H4_TIGCA	5.106e-35	97.37	Histone H4 OS=Tigriopus californicus GN=His4 PE=3 ...	[more]
H4_RHYAM	5.106e-35	97.37	Histone H4 OS=Rhynchosciara americana GN=His4 PE=3...	[more]

Pages

Properties


Property Name	Value
Genbank description	C32104G07EF RVDevelopN Citrus clementina cDNA clone C32104G07, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC921421 ID=FC921421; Name=FC921421; organism=Citrus clementina; type=EST; length=622bp
GAAAAAAAAAACGAGCAAAGGTTGAGAGTGGGGGAAAAAAGAAAGAAAAA
TTCCCAATTAGTTTGAAAACCGTAATTAGCATTTTAATTTCGTAGCAGAA
TGTCTGGACGCGGCAAGGGAGGCAAGGGATTGGGGAAGGGAGGAGCCAAG
AGGCATCGCAAGGTGTTGCGTGATAACATTCAGGGCATCACCAAGCCGGC
TATTCGCCGTTTGGCCAGAAGAGGAGGCGTTAAGAGAATCAGCGGTCTCA
TCTACGAGGAGACACGCGGCGTCCTCAAGATCTTCTTGGAGAACGTCATT
CGCGATGCTGTGACCTACACTGAGCACGCTCGCCGAAAGACGGTGACCGC
CATGGATGTCGTTTATGCGCTCAAGAGGCAGGGCAGGACTCTCTATGGCT
TTGGTGGTTGATGTGGCGTCGTTTTGTATTTTGTGTTTTAGGGTTTTCCT
TTTTTCCTGTAAACCAGTGAACGTGGTTGTGTCTAGCGGGTGGGTTTAAA
TTGGAGGCAACTTGTATTTGCCGTTTCCTAGGGGTTTTTTTATTTTTTTG
GTTCATTGGTGTTTTCATCTTTTGCAATGAGAATCTAGATGTTTGCGAAA
AAAAAAAAAAAAAAAAAAAAAA