FC921421

Overview
NameFC921421
Unique NameFC921421
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length622
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14306 contig Ccv1_Contig14306:1..622. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC921421 vs. ExPASy Swiss-Prot
Match: H4_ASEAQ (Histone H4 OS=Asellus aquaticus GN=His4 PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 5.106e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 1 
Query:  163 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 390
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of FC921421 vs. ExPASy Swiss-Prot
Match: H4_ACRAS (Histone H4 OS=Acrolepiopsis assectella GN=His4 PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 5.106e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 1 
Query:  163 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 390
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of FC921421 vs. ExPASy Swiss-Prot
Match: H4_DENKL (Histone H4 OS=Dendronephthya klunzingeri GN=H4DEKL PE=3 SV=3)

HSP 1 Score: 147.132 bits (370), Expect = 6.668e-35
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = 1 
Query:  163 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 390
            +LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRT
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of FC921421 vs. ExPASy Swiss-Prot
Match: H4_ACRFO (Histone H4 OS=Acropora formosa PE=3 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 6.668e-35
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = 1 
Query:  163 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 390
            +LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRT
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of FC921421 vs. ExPASy Swiss-Prot
Match: H43_MAIZE (Histone H4.3 OS=Zea mays GN=H4 PE=1 SV=3)

HSP 1 Score: 146.747 bits (369), Expect = 8.709e-35
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 1 
Query:  163 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 390
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGV KIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVRKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of FC921421 vs. ExPASy Swiss-Prot
Match: H4_STYPL (Histone H4 OS=Styela plicata PE=3 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 1.137e-34
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = 1 
Query:  163 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 390
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTA+DVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTALDVVYALKRQGRT 97
[Close]
BLAST of FC921421 vs. ExPASy Swiss-Prot
Match: H4_PYRSA (Histone H4 OS=Pyrenomonas salina PE=3 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 1.137e-34
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 1 
Query:  163 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 390
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETR VLK+FLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of FC921421 vs. ExPASy Swiss-Prot
Match: H4_OIKDI (Histone H4 OS=Oikopleura dioica GN=H4.1 PE=3 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 1.137e-34
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = 1 
Query:  163 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 390
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTA+DVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTALDVVYALKRQGRT 97
[Close]
BLAST of FC921421 vs. ExPASy Swiss-Prot
Match: H4_STRPU (Histone H4 OS=Strongylocentrotus purpuratus PE=3 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 2.534e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 1 
Query:  163 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 390
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of FC921421 vs. ExPASy Swiss-Prot
Match: H4_PYCHE (Histone H4 OS=Pycnopodia helianthoides PE=3 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 2.534e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 1 
Query:  163 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 390
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRT 97
The following BLAST results are available for this feature:
BLAST of FC921421 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_ASEAQ5.106e-3597.37Histone H4 OS=Asellus aquaticus GN=His4 PE=3 SV=2[more]
H4_ACRAS5.106e-3597.37Histone H4 OS=Acrolepiopsis assectella GN=His4 PE=... [more]
H4_DENKL6.668e-3596.05Histone H4 OS=Dendronephthya klunzingeri GN=H4DEKL... [more]
H4_ACRFO6.668e-3596.05Histone H4 OS=Acropora formosa PE=3 SV=2[more]
H43_MAIZE8.709e-3598.68Histone H4.3 OS=Zea mays GN=H4 PE=1 SV=3[more]
H4_STYPL1.137e-3496.05Histone H4 OS=Styela plicata PE=3 SV=3[more]
H4_PYRSA1.137e-3497.37Histone H4 OS=Pyrenomonas salina PE=3 SV=3[more]
H4_OIKDI1.137e-3496.05Histone H4 OS=Oikopleura dioica GN=H4.1 PE=3 SV=3[more]
H4_STRPU2.534e-3496.05Histone H4 OS=Strongylocentrotus purpuratus PE=3 S... [more]
H4_PYCHE2.534e-3496.05Histone H4 OS=Pycnopodia helianthoides PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC32104G07EF RVDevelopN Citrus clementina cDNA clone C32104G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921421 ID=FC921421; Name=FC921421; organism=Citrus clementina; type=EST; length=622bp
GAAAAAAAAAACGAGCAAAGGTTGAGAGTGGGGGAAAAAAGAAAGAAAAA
TTCCCAATTAGTTTGAAAACCGTAATTAGCATTTTAATTTCGTAGCAGAA
TGTCTGGACGCGGCAAGGGAGGCAAGGGATTGGGGAAGGGAGGAGCCAAG
AGGCATCGCAAGGTGTTGCGTGATAACATTCAGGGCATCACCAAGCCGGC
TATTCGCCGTTTGGCCAGAAGAGGAGGCGTTAAGAGAATCAGCGGTCTCA
TCTACGAGGAGACACGCGGCGTCCTCAAGATCTTCTTGGAGAACGTCATT
CGCGATGCTGTGACCTACACTGAGCACGCTCGCCGAAAGACGGTGACCGC
CATGGATGTCGTTTATGCGCTCAAGAGGCAGGGCAGGACTCTCTATGGCT
TTGGTGGTTGATGTGGCGTCGTTTTGTATTTTGTGTTTTAGGGTTTTCCT
TTTTTCCTGTAAACCAGTGAACGTGGTTGTGTCTAGCGGGTGGGTTTAAA
TTGGAGGCAACTTGTATTTGCCGTTTCCTAGGGGTTTTTTTATTTTTTTG
GTTCATTGGTGTTTTCATCTTTTGCAATGAGAATCTAGATGTTTGCGAAA
AAAAAAAAAAAAAAAAAAAAAA
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