FC921422

Overview
NameFC921422
Unique NameFC921422
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14307 contig Ccv1_Contig14307:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921422 vs. ExPASy Swiss-Prot
Match: PER7_ARATH (Peroxidase 7 OS=Arabidopsis thaliana GN=PER7 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.413e-28
Identity = 78/186 (41.94%), Postives = 107/186 (57.53%), Query Frame = 1
Query:  139 LRKNFYRDSCKSAEDIVRSITWKNAASNPDLPAKLIRMHFHDCFVRGCDASVLINSTAGNKAERDAVPNLSLGGFEVINEIKSELESRCPGIVSCADIVALATRDSVSFQFQKPDLWEVLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNF 696
            L  N+Y   C   E IV +   +   S+  L   L+R+ FHDC V GCDASVL++       ER +  + +L GFE+I++IKSE+E  CPG VSCADI+  A+R + + Q   P  W  + GRRD   S A + +  +PS   + + L + F   GL V DLVVLSG HTIG + C    +RLYN+
Sbjct:   51 LSLNYYDRICPDFEKIVVTKVREWTKSDSSLGPALLRLIFHDCGVTGCDASVLLDYEG---TERRSPASKTLRGFELIDDIKSEMEKSCPGKVSCADILTSASR-AATVQLGGP-YWPNVYGRRDSKHSYARDVE-KVPSGRRDVTALLETFQSYGLNVLDLVVLSGAHTIGKASCGTIQSRLYNY 230          
BLAST of FC921422 vs. ExPASy Swiss-Prot
Match: PER29_ARATH (Peroxidase 29 OS=Arabidopsis thaliana GN=PER29 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.195e-26
Identity = 75/221 (33.94%), Postives = 112/221 (50.68%), Query Frame = 1
Query:   61 KAAGAGSLLLVCLVVFGIIGVCQGGE--------LRKNFYRDSCKSAEDIVRSITWKNAASNPDLPAKLIRMHFHDCFVRGCDASVLINSTAGNK-AERDAVPNLSLGGFEVINEIKSELESRCPGIVSCADIVALATRDSVSFQFQKPDLWEVLTGRRDG-SVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYN 693
            K+  A S    C +V  ++  C  G+        L  ++Y  +C   E+IVRS        +P  PA L+R+ FHDC V+GCDAS+L+      +  E D+  N  +   +++  IK+ LE  CP  VSC+D++ LA RD+V+       L  V  GR+D  S      AD  LP   A+       F +KG+T+++ V + G HTIGV+HC    +R  N
Sbjct:    4 KSKVAESTAASCFLVMSLLCSCIIGDQMETNNEGLSYSYYEKTCPKVEEIVRSSLSSMFILDPTSPAALLRLMFHDCQVQGCDASILLEPIRDQQFTELDSAKNFGIRKRDLVGSIKTSLELECPKQVSCSDVIILAARDAVA--LTGGPLISVPLGRKDSLSTPSKHVADSELPPSTADVDTTLSLFANKGMTIEESVAIMGAHTIGVTHCNNVLSRFDN 222          
BLAST of FC921422 vs. ExPASy Swiss-Prot
Match: PER42_ARATH (Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 7.117e-26
Identity = 67/184 (36.41%), Postives = 95/184 (51.63%), Query Frame = 1
Query:  139 LRKNFYRDSCKSAEDIVRSITWKNAASNPDLPAKLIRMHFHDCFVRGCDASVLINSTAGNKAERDAVPNLSLGGFEVINEIKSELESRCPGIVSCADIVALATRDSVSFQFQKPDLWEVLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLY 690
            L  NFY+D+C  AEDIVR         + +     +R  FHDC V  CDAS+L++ST     E++   +  L  F  I EIK  LE  CPG+VSC+DI+ L+ R+ +  +        + TGRRDG  S     +  LP    + S + + F   G+    LV L G H++G +HC    +RLY
Sbjct:   31 LMMNFYKDTCPQAEDIVREQVKLLYKRHKNTAFSWLRNIFHDCAVESCDASLLLDSTRRELGEKEHDRSFGLRNFRYIEEIKEALERECPGVVSCSDILVLSAREGI--EAVGGPYIPLKTGRRDGLKSRTDMLESYLPDHNESISVVLEKFKSIGIDTPGLVALLGSHSVGRTHCVKLVHRLY 212          
BLAST of FC921422 vs. ExPASy Swiss-Prot
Match: PERN_IPOBA (Neutral peroxidase OS=Ipomoea batatas PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.705e-25
Identity = 61/146 (41.78%), Postives = 87/146 (59.59%), Query Frame = 1
Query:  235 AKLIRMHFHDCFVRGCDASVLINSTAGNKAERDAVPNL-SLGGFEVINEIKSELESRCPGI-VSCADIVALATRDSVSFQFQKPDLWEVLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHC 666
            A LIR+HFHDCFV GCD  +L+N TA    E+ A  N  S+ GF VI++ K   +++C    VSCAD++A+A RD+  F+      + +  GR+D   +    A+  LP+PF N S     F DKG   +++VVL+G HT+G S C
Sbjct:   92 ASLIRLHFHDCFVDGCDGGILLNDTANFTGEQGAPANSNSVRGFSVIDQAKRNAQTKCADTPVSCADVLAIAARDA--FRKFTNQTYNITLGRQDARTANLTGANTQLPAPFDNLSIQTAKFADKGFNQREMVVLAGAHTVGFSRC 235          
BLAST of FC921422 vs. ExPASy Swiss-Prot
Match: PERX_SOLTU (Suberization-associated anionic peroxidase OS=Solanum tuberosum PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.290e-24
Identity = 67/180 (37.22%), Postives = 101/180 (56.11%), Query Frame = 1
Query:  139 LRKNFYRDSCKSAEDIVRSITWKNAASNPDLPAKLIRMHFHDCFVRGCDASVLINSTAGN-KAERDAVPNL-SLGGFEVINEIKSELESRCPGI-VSCADIVALATRDSVSFQFQKPDLWEVLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCT 669
            LR+    ++C  +   VR +      +   + A LIR+HFHDCFV GCD  +L++   G    E+++ PN  S  G+EVI + K  +   CP I VSCADI+A+A RDSV+    +   + V  GR D   +    A   LP+PF N +   + FNDK  T++++V L+G HT+G + C+
Sbjct:   71 LRQQLTPEACVFSA--VRGVVDSAIDAETRMGASLIRLHFHDCFVDGCDGGILLDDINGTFTGEQNSPPNANSARGYEVIAQAKQSVIDTCPNISVSCADILAIAARDSVAKLGGQT--YNVALGRSDARTANFTGALTQLPAPFDNLTVQIQKFNDKNFTLREMVALAGAHTVGFARCS 246          
BLAST of FC921422 vs. ExPASy Swiss-Prot
Match: PER1_SOLLC (Suberization-associated anionic peroxidase 1 OS=Solanum lycopersicum GN=TAP1 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.662e-24
Identity = 65/180 (36.11%), Postives = 104/180 (57.78%), Query Frame = 1
Query:  139 LRKNFYRDSCKSAEDIVRSITWKNAASNPDLPAKLIRMHFHDCFVRGCDASVLINSTAGN-KAERDAVPNL-SLGGFEVINEIKSELESRCPGI-VSCADIVALATRDSVSFQFQKPDLWEVLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCT 669
            LR+    ++C  +   VR++      +   + A LIR+HFHDCFV GCD  +L++   G    E+++ PN  S  G+EVI + K  + + CP + VSCADI+A+A RDSV+    +   + V  GR D   +  + A   LP+PF N +   + F+DK  T++++V L+G HT+G + C+
Sbjct:   72 LRQQLTPEACVFSA--VRAVVDSAIDAETRMGASLIRLHFHDCFVDGCDGGILLDDINGTFTGEQNSPPNANSARGYEVIAQAKQSVINTCPNVSVSCADILAIAARDSVAKLGGQT--YSVALGRSDARTANFSGAINQLPAPFDNLTVQIQKFSDKNFTLREMVALAGAHTVGFARCS 247          
BLAST of FC921422 vs. ExPASy Swiss-Prot
Match: PER2_SOLLC (Suberization-associated anionic peroxidase 2 OS=Solanum lycopersicum GN=TAP2 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.306e-23
Identity = 61/148 (41.22%), Postives = 91/148 (61.49%), Query Frame = 1
Query:  235 AKLIRMHFHDCFVRGCDASVLINSTAGN-KAERDAVPNL-SLGGFEVINEIKSELESRCPGI-VSCADIVALATRDSVSFQFQKPDLWEVLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCT 669
            A LIR+HFHDCFV GCD  +L++   G    E+++ PN  S+ GFEVI + K  +   CP I VSCADI+A+A RDS++    +   + V  GR D + +  + A   LP+P  N +   + F+DK  TV+++V L+G HT+G + C+
Sbjct:  101 ASLIRLHFHDCFVDGCDGGILLDDINGTFTGEQNSPPNNNSVRGFEVIAQAKQSVVDSCPNISVSCADILAIAARDSLAKLGGQT--YTVALGRSDATTANFSGAINQLPAPSDNLTVQIQKFSDKNFTVREMVALAGAHTVGFARCS 246          
BLAST of FC921422 vs. ExPASy Swiss-Prot
Match: PERA_IPOBA (Anionic peroxidase OS=Ipomoea batatas PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.622e-20
Identity = 58/146 (39.73%), Postives = 81/146 (55.48%), Query Frame = 1
Query:  235 AKLIRMHFHDCFVRGCDASVLINSTAGNKAERDAV-PNLSLGGFEVINEIKSELESRCPGI-VSCADIVALATRDSVSFQFQKPDLWEVLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHC 666
            A LIR+ FHDCFV GCDA +L+N TA    E+ A   N S+ GF VI + K  ++++ P + VSCADI+++A RD  SF+      + V  GR+D   +    A+  L  P  N +     F  KG    ++V L G HTIG + C
Sbjct:   91 ASLIRLFFHDCFVDGCDAGLLLNDTATFTGEQTAAGNNNSVRGFAVIEQAKQNVKTQMPDMSVSCADILSIAARD--SFEKFSGSTYTVTLGRKDARTANFTGANTQLVGPNENLTSQLTKFAAKGFNGTEMVALLGSHTIGFARC 234          
The following BLAST results are available for this feature:
BLAST of FC921422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
PER7_ARATH3.413e-2841.94Peroxidase 7 OS=Arabidopsis thaliana GN=PER7 PE=2 ... [more]
PER29_ARATH3.195e-2633.94Peroxidase 29 OS=Arabidopsis thaliana GN=PER29 PE=... [more]
PER42_ARATH7.117e-2636.41Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=... [more]
PERN_IPOBA2.705e-2541.78Neutral peroxidase OS=Ipomoea batatas PE=1 SV=1[more]
PERX_SOLTU2.290e-2437.22Suberization-associated anionic peroxidase OS=Sola... [more]
PER1_SOLLC6.662e-2436.11Suberization-associated anionic peroxidase 1 OS=So... [more]
PER2_SOLLC3.306e-2341.22Suberization-associated anionic peroxidase 2 OS=So... [more]
PERA_IPOBA7.622e-2039.73Anionic peroxidase OS=Ipomoea batatas PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC32104G08EF RVDevelopN Citrus clementina cDNA clone C32104G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921422 ID=FC921422; Name=FC921422; organism=Citrus clementina; type=EST; length=701bp
GAAGTAAGCTTGCAGCGTTAAACTCATTTCTCTTAGTAACTAGTGACATT
AAAGATGAAGAAAGCCGCTGGGGCTGGGTCTCTTTTGTTAGTTTGCTTAG
TAGTTTTTGGTATTATAGGGGTTTGCCAAGGAGGTGAGCTAAGGAAGAAT
TTCTACAGGGACAGCTGTAAATCTGCTGAAGATATCGTCAGGAGCATCAC
CTGGAAAAATGCCGCCAGTAACCCTGACTTGCCGGCCAAGCTTATCAGAA
TGCATTTCCATGACTGCTTTGTTAGGGGTTGCGATGCGTCGGTTTTGATA
AACTCAACTGCAGGTAACAAAGCAGAGAGGGATGCAGTTCCGAATCTATC
TTTGGGAGGTTTCGAAGTTATTAATGAGATTAAATCGGAGCTCGAGAGCA
GGTGTCCAGGAATTGTTTCTTGTGCCGATATCGTAGCTTTGGCTACAAGG
GATTCTGTTTCATTCCAATTTCAAAAACCGGACCTGTGGGAAGTGCTCAC
CGGTAGAAGAGATGGCAGTGTGTCCATAGCTGCTGAGGCCGATCTGCTGC
TTCCTTCACCTTTTGCCAACTTCAGTGAACTCAAGAAAAATTTTAACGAC
AAAGGTCTCACTGTCAAAGATCTTGTAGTCCTTTCAGGTGGCCACACAAT
CGGAGTTTCGCACTGCACCTTCTTCAGCAACAGGCTCTACAATTTCACAG
G
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