FC921428

Overview
NameFC921428
Unique NameFC921428
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length455
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14309 contig Ccv1_Contig14309:1..455. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921428 vs. ExPASy Swiss-Prot
Match: ADHX_DROME (Alcohol dehydrogenase class-3 OS=Drosophila melanogaster GN=Fdh PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 1.911e-11
Identity = 30/57 (52.63%), Postives = 44/57 (77.19%), Query Frame = 2
Query:    2 TAFGGFKSRSQVPWLVDKYMKKEIKVDEYITHNMTLWEINEAFHYMHGGDCLRCVLK 172
            +AFGG++S S VP LV+ Y+KK++ VDE+ITH + L +INEAF  MH G+ +R ++K
Sbjct:  322 SAFGGWRSVSDVPKLVEDYLKKDLLVDEFITHELPLSQINEAFDLMHKGESIRSIIK 378          
BLAST of FC921428 vs. ExPASy Swiss-Prot
Match: FADH_YEAST (S-(hydroxymethyl)glutathione dehydrogenase OS=Saccharomyces cerevisiae GN=SFA1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.260e-11
Identity = 31/60 (51.67%), Postives = 40/60 (66.67%), Query Frame = 2
Query:    2 TAFGGFKSRSQVPWLVDKYMKKEIKVDEYITHNMTLWEINEAFHYMHGGDCLRCVLKMQE 181
            +AFGG K RS++  L+  Y K  +KV+E+ITH     EIN+AF  +H GDCLR VLK  E
Sbjct:  325 SAFGGIKGRSEMGGLIKDYQKGALKVEEFITHRRPFKEINQAFEDLHNGDCLRTVLKSDE 384          
BLAST of FC921428 vs. ExPASy Swiss-Prot
Match: FADH2_SCHPO (Putative S-(hydroxymethyl)glutathione dehydrogenase 2 OS=Schizosaccharomyces pombe GN=SPCC13B11.04c PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 4.258e-11
Identity = 30/57 (52.63%), Postives = 42/57 (73.68%), Query Frame = 2
Query:    5 AFGGFKSRSQVPWLVDKYMKKEIKVDEYITHNMTLWEINEAFHYMHGGDCLRCVLKM 175
            AFGG K RSQ+P LV +Y+  ++++D+YITH   L EINEAF  MH G+C++ VL +
Sbjct:  323 AFGGVKGRSQLPDLVKEYLDHKLEIDKYITHRRPLKEINEAFTDMHNGNCIKTVLSI 379          
BLAST of FC921428 vs. ExPASy Swiss-Prot
Match: ADH1_PEA (Alcohol dehydrogenase 1 OS=Pisum sativum PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.258e-11
Identity = 27/60 (45.00%), Postives = 46/60 (76.67%), Query Frame = 2
Query:    2 TAFGGFKSRSQVPWLVDKYMKKEIKVDEYITHNMTLWEINEAFHYMHGGDCLRCVLKMQE 181
            T +G +K R+ +P +V+KYMK E++++++ITH +   EIN+AF YM  G+ +RC++KM+E
Sbjct:  321 TFYGNYKPRTDLPNVVEKYMKGELELEKFITHTVPFSEINKAFDYMLKGESIRCIIKMEE 380          
BLAST of FC921428 vs. ExPASy Swiss-Prot
Match: FADH_CANMA (S-(hydroxymethyl)glutathione dehydrogenase OS=Candida maltosa GN=FDH1 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.561e-11
Identity = 29/57 (50.88%), Postives = 41/57 (71.93%), Query Frame = 2
Query:    5 AFGGFKSRSQVPWLVDKYMKKEIKVDEYITHNMTLWEINEAFHYMHGGDCLRCVLKM 175
            AFGG K RSQ+P +V+ Y+  ++KV+E+ITH   L  IN+AF  MH GDC+R V+ +
Sbjct:  324 AFGGVKGRSQLPGIVNNYLDGKLKVEEFITHREPLAAINKAFEEMHAGDCIRAVVDL 380          
BLAST of FC921428 vs. ExPASy Swiss-Prot
Match: ADHX_SPAAU (Alcohol dehydrogenase class-3 OS=Sparus aurata PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.263e-11
Identity = 30/56 (53.57%), Postives = 39/56 (69.64%), Query Frame = 2
Query:    2 TAFGGFKSRSQVPWLVDKYMKKEIKVDEYITHNMTLWEINEAFHYMHGGDCLRCVL 169
            TAFGG+KS   VP LV+ YM K++KVDE++TH +   +INE F  MH G  +R VL
Sbjct:  319 TAFGGWKSVESVPKLVEDYMSKKLKVDEFVTHTLPFEKINEGFELMHAGKSIRTVL 374          
BLAST of FC921428 vs. ExPASy Swiss-Prot
Match: ADH1_ORYSJ (Alcohol dehydrogenase 1 OS=Oryza sativa subsp. japonica GN=ADH1 PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 7.263e-11
Identity = 27/59 (45.76%), Postives = 45/59 (76.27%), Query Frame = 2
Query:    2 TAFGGFKSRSQVPWLVDKYMKKEIKVDEYITHNMTLWEINEAFHYMHGGDCLRCVLKMQ 178
            T FG +K R+ +P +V+ YMKKE++V+++ITH++   EIN AF  MH G+ +RC+++M+
Sbjct:  320 TFFGNYKPRTDLPNVVELYMKKELEVEKFITHSVPFSEINTAFDLMHKGEGIRCIIRME 378          
BLAST of FC921428 vs. ExPASy Swiss-Prot
Match: ADH1_ORYSI (Alcohol dehydrogenase 1 OS=Oryza sativa subsp. indica GN=ADH1 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.263e-11
Identity = 27/59 (45.76%), Postives = 45/59 (76.27%), Query Frame = 2
Query:    2 TAFGGFKSRSQVPWLVDKYMKKEIKVDEYITHNMTLWEINEAFHYMHGGDCLRCVLKMQ 178
            T FG +K R+ +P +V+ YMKKE++V+++ITH++   EIN AF  MH G+ +RC+++M+
Sbjct:  320 TFFGNYKPRTDLPNVVELYMKKELEVEKFITHSVPFSEINTAFDLMHKGEGIRCIIRME 378          
BLAST of FC921428 vs. ExPASy Swiss-Prot
Match: ADHX_RABIT (Alcohol dehydrogenase class-3 OS=Oryctolagus cuniculus GN=ADH5 PE=2 SV=3)

HSP 1 Score: 65.855 bits (159), Expect = 9.486e-11
Identity = 30/58 (51.72%), Postives = 42/58 (72.41%), Query Frame = 2
Query:    2 TAFGGFKSRSQVPWLVDKYMKKEIKVDEYITHNMTLWEINEAFHYMHGGDCLRCVLKM 175
            TAFGG+KS   VP LV +YM K+I VDE++T+ ++  +INEAF  MH G  +R V+K+
Sbjct:  317 TAFGGWKSVESVPKLVSEYMSKKINVDEFVTNTLSFDQINEAFELMHSGKSIRTVVKI 374          
The following BLAST results are available for this feature:
BLAST of FC921428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
ADHX_DROME1.911e-1152.63Alcohol dehydrogenase class-3 OS=Drosophila melano... [more]
FADH_YEAST3.260e-1151.67S-(hydroxymethyl)glutathione dehydrogenase OS=Sacc... [more]
FADH2_SCHPO4.258e-1152.63Putative S-(hydroxymethyl)glutathione dehydrogenas... [more]
ADH1_PEA4.258e-1145.00Alcohol dehydrogenase 1 OS=Pisum sativum PE=3 SV=1[more]
FADH_CANMA5.561e-1150.88S-(hydroxymethyl)glutathione dehydrogenase OS=Cand... [more]
ADHX_SPAAU7.263e-1153.57Alcohol dehydrogenase class-3 OS=Sparus aurata PE=... [more]
ADH1_ORYSJ7.263e-1145.76Alcohol dehydrogenase 1 OS=Oryza sativa subsp. jap... [more]
ADH1_ORYSI7.263e-1145.76Alcohol dehydrogenase 1 OS=Oryza sativa subsp. ind... [more]
ADHX_RABIT9.486e-1151.72Alcohol dehydrogenase class-3 OS=Oryctolagus cunic... [more]

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Properties
Property NameValue
Genbank descriptionC32104H02EF RVDevelopN Citrus clementina cDNA clone C32104H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921428 ID=FC921428; Name=FC921428; organism=Citrus clementina; type=EST; length=455bp
AACAGCTTTTGGTGGTTTCAAGAGCCGTTCACAAGTGCCTTGGCTTGTAG
ACAAGTACATGAAGAAGGAAATTAAGGTTGATGAGTACATAACTCACAAT
ATGACTCTTTGGGAGATCAACGAGGCATTCCATTATATGCATGGAGGGGA
CTGCCTACGCTGTGTGCTTAAAATGCAGGAATGAGAGGATCTATTGAGCC
CTGCATTAGTTCTTATGAAATGGTATATTTTGGTGTTTACGTGGAAATTG
CATCCTTTTATGTGCAAACTGTGAGTGTGTGAAGAAAACTACTCTAATGT
GAGATAGTTTGGCATGTGTTGCAGCAAAAATGTTTCTATTCAACTTTATT
AAGCAGCACATTGCTAAGGACTTGCATCACAATAATAAATGTGTTGTCTA
TGAAGTATGAACTATCTGCTGCTGCAGTAGCTTTCAGAATACATTTATGG
ATCCC
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