FC921463

Overview
NameFC921463
Unique NameFC921463
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921463 vs. ExPASy Swiss-Prot
Match: MDH_STRAW (Malate dehydrogenase OS=Streptomyces avermitilis GN=mdh PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.571e-55
Identity = 107/201 (53.23%), Postives = 141/201 (70.15%), Query Frame = 2
Query:   95 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCEVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 697
            M + PV V VTGAAGQIGYAL+  IA G +LG D PV L +L+I PA +A  G  MEL D AFPLL+G+  T D   A  G N+ ++VG  PR +GMER D++S N  I+K Q  A+  +AA + ++LVV NPANTNALI +  AP +PA+  T +TRLDHNRAL Q+++K    V+D+K + IWGNHS++QYPD+ HA+V
Sbjct:    1 MTRTPVNVTVTGAAGQIGYALLFRIASGQLLGADVPVKLRLLEITPALKAAEGTAMELDDCAFPLLQGIDITDDPNVAFDGTNVGLLVGARPRTKGMERGDLLSANGGIFKPQGKAINDNAADDVKILVVGNPANTNALIAQAAAPDVPAERFTAMTRLDHNRALTQLAKKTGSTVADIKRLTIWGNHSATQYPDIFHASV 201          
BLAST of FC921463 vs. ExPASy Swiss-Prot
Match: MDH_FRAAA (Malate dehydrogenase OS=Frankia alni (strain ACN14a) GN=mdh PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.571e-55
Identity = 107/201 (53.23%), Postives = 139/201 (69.15%), Query Frame = 2
Query:   95 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCEVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 697
            M+  PV V VTGAAGQIGYAL+  IA G +LG D PV L +L+IP A  A  G  +EL D+AFPLL GV    DA  A  G N+A++VG  PR +GMER D++S N  I+K Q  A+   AA +  VLVV NPANTNALI +  AP +PA+  T +TRLDHNRA+ Q+++KL V  ++++ + IWGNHS++QYPD+ HA V
Sbjct:    1 MSSTPVNVTVTGAAGQIGYALLFRIASGQLLGADTPVRLRLLEIPQAVRAAEGTALELEDSAFPLLAGVDVFDDAKRAFEGTNVALLVGARPRTKGMERGDLLSANGGIFKPQGEAINSGAAEDIRVLVVGNPANTNALIAQTHAPDVPAERFTAMTRLDHNRAIAQLAKKLGVPSAEIRKITIWGNHSATQYPDIFHAQV 201          
BLAST of FC921463 vs. ExPASy Swiss-Prot
Match: MDH_CHRVO (Malate dehydrogenase OS=Chromobacterium violaceum GN=mdh PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.571e-55
Identity = 110/200 (55.00%), Postives = 137/200 (68.50%), Query Frame = 2
Query:  101 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCEVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 700
            K PVRV VTGAAGQIGY+L+  IA G MLG DQPVILH+LD+P A  AL GV MEL D AFPLL G+VAT D   A   V +A++VG  PR +GMERKD++  N +I+  Q  AL  HAA + +VLVV NPANTNA I  + AP +  KN T + RLDHNRAL QI+ K    V+ ++ + +WGNHS + Y D   AT++
Sbjct:    2 KAPVRVAVTGAAGQIGYSLLFRIASGEMLGKDQPVILHLLDLPQAQTALKGVMMELEDCAFPLLAGMVATDDPNVAFKDVKVALLVGARPRSKGMERKDLLEANGAIFTVQGKALNDHAARDVKVLVVGNPANTNAWIAMKSAPDLDPKNFTAMLRLDHNRALSQIAAKTGKPVASIEKLAVWGNHSPTMYADYRFATID 201          
BLAST of FC921463 vs. ExPASy Swiss-Prot
Match: MDH_HALHL (Malate dehydrogenase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=mdh PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.357e-55
Identity = 105/199 (52.76%), Postives = 138/199 (69.35%), Query Frame = 2
Query:  101 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCEVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 697
            K PVRV VTGAAGQIGY+L+  IA G MLG DQPV L +L+IP A EAL G  MEL D AFPL+ G++AT  A EA    +  ++VG  PR  GMERKD++  N +I+ AQ  AL   A  + +VL V NPANTNALI +  AP +  +N T +TRLDHNRAL Q+S K+    ++++ + +WGNHS++QYPD++H T+
Sbjct:    2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVTLQLLEIPQAQEALQGTVMELEDCAFPLVDGIIATDSAEEAFRDADYVLLVGAKPRGPGMERKDLLEANAAIFSAQGQALNAVAKRDVKVLAVGNPANTNALITQRNAPDLDPRNFTAMTRLDHNRALAQLSNKVGCHSTEIRGLAVWGNHSATQYPDISHCTI 200          
BLAST of FC921463 vs. ExPASy Swiss-Prot
Match: MDH_CELJU (Malate dehydrogenase OS=Cellvibrio japonicus (strain Ueda107) GN=mdh PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.727e-55
Identity = 107/200 (53.50%), Postives = 139/200 (69.50%), Query Frame = 2
Query:  101 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCEVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 700
            K PVRV VTGAAGQI Y+L+  IA G MLG DQPVIL +L+I PA +AL GV MEL D AFPLL G+V T D   A    + A++VG  PR  GMERKD+++ N +I+  Q  A+  HA+ N +VLVV NPANTNALI +  AP I  +  T +TRLDHNRAL Q++ K    ++++   +IWGNHSS+QYPD+++  V+
Sbjct:    2 KAPVRVTVTGAAGQISYSLLFRIAAGDMLGKDQPVILQLLEITPALKALQGVAMELDDCAFPLLAGIVTTDDPSVAFKDSDYALLVGARPRGPGMERKDLLAANAAIFSVQGKAINDHASKNIKVLVVGNPANTNALIAQRNAPDISPRQFTAMTRLDHNRALSQLATKTGTSINNITKALIWGNHSSTQYPDLHNTLVD 201          
BLAST of FC921463 vs. ExPASy Swiss-Prot
Match: MDH_SACD2 (Malate dehydrogenase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=mdh PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.712e-54
Identity = 108/199 (54.27%), Postives = 136/199 (68.34%), Query Frame = 2
Query:  101 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCEVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 697
            K PVRV VTGAAGQI Y+L+  IA G MLG DQPVIL ML+I PA EAL GV MEL D AFPLL G+V + D   A    + A++VG  PR  GMERKD++  N +I+  Q  A+  HA+ + +VLVV NPANTNALI +  AP I  +  T + RLDHNR L Q++ KL+V + D+  + IWGNHS++QYPD+ H  V
Sbjct:    2 KAPVRVAVTGAAGQISYSLLFRIAAGEMLGKDQPVILQMLEITPALEALKGVAMELDDCAFPLLAGMVCSDDPNVAFKDADYALLVGARPRGPGMERKDLLEANAAIFSVQGKAINDHASRDIKVLVVGNPANTNALIAQRNAPDINPRQFTAMMRLDHNRGLSQLAAKLDVTLEDITKMTIWGNHSATQYPDLFHTLV 200          
BLAST of FC921463 vs. ExPASy Swiss-Prot
Match: MDH_BURP8 (Malate dehydrogenase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=mdh PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 4.848e-54
Identity = 108/200 (54.00%), Postives = 136/200 (68.00%), Query Frame = 2
Query:   95 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCEVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHAT 694
            MAK   RV VTGAAGQIGY+L+  IA G MLG DQPVIL +LD+P A  A+ GV MEL D AFPLL GVV T D   A    ++A++VG  PR +GMERKD++S N  I+  Q  AL + A+ + +VLVV NPANTNA I  + AP +P KN T + RLDHNRAL Q++ K    VS ++ +++WGNHS + YPD   AT
Sbjct:    1 MAKPAKRVAVTGAAGQIGYSLLFRIANGDMLGKDQPVILQLLDLPQAQAAVKGVVMELEDCAFPLLAGVVVTDDPKVAFKDADVALLVGARPRSKGMERKDLLSANAEIFTVQGKALNEVASRDVKVLVVGNPANTNAYIAMKSAPDLPKKNFTAMLRLDHNRALSQLAAKSGKPVSSIEKLVVWGNHSPTMYPDFRVAT 200          
BLAST of FC921463 vs. ExPASy Swiss-Prot
Match: MDH_BORPE (Malate dehydrogenase OS=Bordetella pertussis GN=mdh PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 4.848e-54
Identity = 113/203 (55.67%), Postives = 140/203 (68.97%), Query Frame = 2
Query:   95 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCEVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 697
            M+K  +RV VTGAAGQIGYAL+  IA G MLG DQPVIL +L+IP   A +AL GV MEL D AFPLL  V A +D   A    ++A++VG  PR  GMERKD++S N  I+ AQ  AL   A+ N +VLVV NPANTNA I  + AP +PAKN T + RLDHNRAL Q+S K   +V+D++ +I+WGNHS + YPD   ATV
Sbjct:    1 MSKPALRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIPDEKAQKALKGVIMELEDCAFPLLHEVTAHSDPRTAFKDADVALLVGARPRGPGMERKDLLSVNAQIFTAQGRALNDVASRNVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLRLDHNRALSQLSAKSGKRVADIEKLIVWGNHSPTMYPDFRFATV 203          
BLAST of FC921463 vs. ExPASy Swiss-Prot
Match: MDH_BORPA (Malate dehydrogenase OS=Bordetella parapertussis GN=mdh PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 4.848e-54
Identity = 113/203 (55.67%), Postives = 140/203 (68.97%), Query Frame = 2
Query:   95 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCEVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 697
            M+K  +RV VTGAAGQIGYAL+  IA G MLG DQPVIL +L+IP   A +AL GV MEL D AFPLL  V A +D   A    ++A++VG  PR  GMERKD++S N  I+ AQ  AL   A+ N +VLVV NPANTNA I  + AP +PAKN T + RLDHNRAL Q+S K   +V+D++ +I+WGNHS + YPD   ATV
Sbjct:    1 MSKPALRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIPDEKAQKALKGVIMELEDCAFPLLHEVTAHSDPRTAFKDADVALLVGARPRGPGMERKDLLSVNAQIFTAQGRALNDVASRNVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLRLDHNRALSQLSAKSGKRVADIEKLIVWGNHSPTMYPDFRFATV 203          
BLAST of FC921463 vs. ExPASy Swiss-Prot
Match: MDH_BORBR (Malate dehydrogenase OS=Bordetella bronchiseptica GN=mdh PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 4.848e-54
Identity = 113/203 (55.67%), Postives = 140/203 (68.97%), Query Frame = 2
Query:   95 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCEVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 697
            M+K  +RV VTGAAGQIGYAL+  IA G MLG DQPVIL +L+IP   A +AL GV MEL D AFPLL  V A +D   A    ++A++VG  PR  GMERKD++S N  I+ AQ  AL   A+ N +VLVV NPANTNA I  + AP +PAKN T + RLDHNRAL Q+S K   +V+D++ +I+WGNHS + YPD   ATV
Sbjct:    1 MSKPALRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIPDEKAQKALKGVIMELEDCAFPLLHEVTAHSDPRTAFKDADVALLVGARPRGPGMERKDLLSVNAQIFTAQGRALNDVASRNVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLRLDHNRALSQLSAKSGKRVADIEKLIVWGNHSPTMYPDFRFATV 203          
The following BLAST results are available for this feature:
BLAST of FC921463 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
MDH_STRAW2.571e-5553.23Malate dehydrogenase OS=Streptomyces avermitilis G... [more]
MDH_FRAAA2.571e-5553.23Malate dehydrogenase OS=Frankia alni (strain ACN14... [more]
MDH_CHRVO2.571e-5555.00Malate dehydrogenase OS=Chromobacterium violaceum ... [more]
MDH_HALHL3.357e-5552.76Malate dehydrogenase OS=Halorhodospira halophila (... [more]
MDH_CELJU5.727e-5553.50Malate dehydrogenase OS=Cellvibrio japonicus (stra... [more]
MDH_SACD23.712e-5454.27Malate dehydrogenase OS=Saccharophagus degradans (... [more]
MDH_BURP84.848e-5454.00Malate dehydrogenase OS=Burkholderia phymatum (str... [more]
MDH_BORPE4.848e-5455.67Malate dehydrogenase OS=Bordetella pertussis GN=md... [more]
MDH_BORPA4.848e-5455.67Malate dehydrogenase OS=Bordetella parapertussis G... [more]
MDH_BORBR4.848e-5455.67Malate dehydrogenase OS=Bordetella bronchiseptica ... [more]

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Properties
Property NameValue
Genbank descriptionC32105C04EF RVDevelopN Citrus clementina cDNA clone C32105C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921463 ID=FC921463; Name=FC921463; organism=Citrus clementina; type=EST; length=709bp
GACTTCATCCACTATCACTCCATCGAAGTTCTCCTTCTCTCGCTTTACTG
GAAAAATCTTTTCGTTTCCTGTGATACATCTCTGATCCGAACTAATGGCC
AAGGAACCAGTTCGCGTTCTCGTCACCGGCGCCGCAGGGCAAATTGGATA
TGCACTTGTCCCCATGATTGCTAGGGGAGTGATGTTGGGTACTGACCAGC
CTGTGATTCTGCACATGCTTGATATCCCACCCGCAGCAGAGGCATTGAAT
GGTGTGAAGATGGAGTTGGTTGATGCTGCATTCCCTCTTCTTAAAGGTGT
TGTTGCTACAACTGATGCTGTTGAGGCATGCACTGGGGTCAATATTGCCG
TTATGGTTGGTGGCTTTCCAAGAAAAGAAGGAATGGAGAGAAAAGATGTG
ATGTCAAAGAACGTTTCAATCTACAAGGCTCAGGCTTCTGCCCTGGAGCA
GCACGCAGCTCCGAACTGCGAGGTTCTAGTTGTCGCTAACCCTGCAAACA
CCAATGCATTGATTCTGAAAGAATTTGCGCCATCAATCCCTGCTAAGAAC
ATTACATGCTTGACCAGATTGGATCATAACAGGGCATTGGGACAAATATC
TGAGAAACTGAATGTCCAAGTATCTGATGTTAAGAATGTGATTATTTGGG
GAAATCATTCATCATCTCAGTACCCTGATGTCAACCATGCAACTGTCAAT
ACTGCAGCT
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