FC921468

Overview
NameFC921468
Unique NameFC921468
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC921468 vs. ExPASy Swiss-Prot
Match: WDR5_BOVIN (WD repeat-containing protein 5 OS=Bos taurus GN=WDR5 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 39/152 (25.66%), Postives = 80/152 (52.63%), Query Frame = 1 
Query:  187 PKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHAEDVTQVHFVPNNQNKVVSASVDGLICTFDT 642
            P  +W  +A S +  ++K++    G++     GH   ++ +++S  S  ++L S S D T++ WD  S   + ++   S  +FC +F   ++ +++      ++ WD +  K +  L  +H++ V+ VHF   + + +VS+S DGL   +DT
Sbjct:   55 PNGEW--LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDT 200
The following BLAST results are available for this feature:
BLAST of FC921468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
WDR5_BOVIN6.575e-1125.66WD repeat-containing protein 5 OS=Bos taurus GN=WD... [more]

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Properties
Property NameValue
Genbank descriptionC32105C09EF RVDevelopN Citrus clementina cDNA clone C32105C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921468 ID=FC921468; Name=FC921468; organism=Citrus clementina; type=EST; length=706bp
GACACACGAAAGGAAAGGCGGGAGCAACAACTGGAAGAAGAAGGCACAGA
GATGGAGATGGAAGCGGAAGAATCTCAATCTCAACCTAAATCCCAGAGCT
GTGATAATGTAAACTCAATCAAGAGATTTGGGCTCAAAAACTCAATTCAA
ACCAACTTCGGCGACGACTATGTTTTTGAAATCGTTCCTAAGAATGACTG
GTCATTAATGGCGGTGTCGCTGTCAACAAATGTAGTGAAACTGTACTCAC
CAGTGACCGGTCAGTACTCTGGAGAGTGCAAGGGTCATTCTTCAACTGTA
AACCAAATATCTTTCTCAGGTCCATCAACCCCACACGTTCTGCATTCATG
CTCTTCTGATGGCACCATCAGAGCTTGGGACACCAGATCATTCCATGAGG
TATGGAGTGTAACTGCTGGTTCTCAGGAGATCTTCTGTTTTTCTTTTGGA
GGATCAACTGATTATCTTCTTGCTGCTGGATGTGGTTCACAGATACAGTT
CTGGGACTGGAGGAACAAGAAGCAAGTTGCTTGTTTGGAGGAGTCTCATG
CTGAGGATGTCACCCAGGTTCACTTTGTGCCTAACAATCAAAATAAGGTT
GTTTCTGCTTCTGTGGATGGATTGATTTGTACATTTGATACTGGTGGAGA
TATCAATGATGATGATCTTCTGGAATCTGTGATCATGTGGGAACGTCCGN
TTGGGA
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