FC921473

Overview
NameFC921473
Unique NameFC921473
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921473 vs. ExPASy Swiss-Prot
Match: CP2CJ_HUMAN (Cytochrome P450 2C19 OS=Homo sapiens GN=CYP2C19 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 49/173 (28.32%), Postives = 90/173 (52.02%), Query Frame = 3
Query:   96 RYRLPPGPYPWPIIGNLLDVK-PDRCRCFAEWSKIYGPIMSVWIGSSLNVIVSNSELAKQVLKDCDQQLANR-HRPKAVAIISKGGTDLVWADYGAHYVKVRR--VCTLELFSPKRTEALRPIREEEVRAMIASIFKDATNSSNSLVLRKYLGSVAFNNITRLVFGKRFESEE 602
            R +LPPGP P P+IGN+L +   D  +     SKIYGP+ +++ G    V++   E+ K+ L D  ++ + R H P  +A  +  G  +V+++ G  + ++RR  + TL  F   +  ++    +EE R ++  + K   +  +   +   LG    N I  ++F KRF+ ++
Sbjct:   26 RGKLPPGPTPLPVIGNILQIDIKDVSKSLTNLSKIYGPVFTLYFGLERMVVLHGYEVVKEALIDLGEEFSGRGHFP--LAERANRGFGIVFSN-GKRWKEIRRFSLMTLRNFGMGK-RSIEDRVQEEARCLVEELRKTKASPCDPTFI---LGCAPCNVICSIIFQKRFDYKD 191          
BLAST of FC921473 vs. ExPASy Swiss-Prot
Match: C80A1_BERST (Berbamunine synthase OS=Berberis stolonifera GN=CYP80A1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 45/164 (27.44%), Postives = 78/164 (47.56%), Query Frame = 3
Query:  105 LPPGPYPWPIIGNLLDVKPDRCRCFAEW----SKIYGPIMSVWIGSSLNVIVSNSELAKQVLKDCDQQLANRHRPKAVAIISKGGTDLVWADYGAHYVKVRRVCTLELFSPKRTEALRPIREEEVRAMIASIFKDATNSSNSLVLRKYLGSVAFNNITRLVFGK 584
            LPP P  WPI+G+L D+       F ++    ++ YGP++ +  G   ++  S  E A +VL+  D+ L+ R       I       ++W+D  +++ K R++   E+FS K  +A    RE     ++  I    T   + + LR +L   A N +  +VF K
Sbjct:   28 LPPSPPAWPIVGHLPDLISKNSPPFLDYMSNIAQKYGPLIHLKFGLHSSIFASTKEAAMEVLQTNDKVLSGRQPLPCFRIKPHIDYSILWSDSNSYWKKGRKILHTEIFSQKMLQAQEKNRERVAGNLVNFIM---TKVGDVVELRSWLFGCALNVLGHVVFSK 188          
BLAST of FC921473 vs. ExPASy Swiss-Prot
Match: C77A1_SOLME (Cytochrome P450 77A1 (Fragment) OS=Solanum melongena GN=CYP77A1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 51/170 (30.00%), Postives = 78/170 (45.88%), Query Frame = 3
Query:  105 LPPGPYPWPIIGNLLDVKPDRCRCF---AEWSKIYGPIMSVWIGSSLNVIVSNSELAKQVLKDCDQQLANRHRPKAV-AIISKGGTDLVWADYGAHYVKVRRVCTLELFSPKRTEALRPIREEEVRAMIASIFKDATNSSNSLVLRKYLGSVAFNNITRLVFGKRFESEE 602
            LPPGP  WPI+GNL  V     + F    +    YG I ++ +GS   +IV+++ELA + L    Q  A+R R      I S     +  A YG  +  +RR     + SP R +  R  RE  +  +I  I  DA  +++ +   K      F  +  + FG   ++EE
Sbjct:   27 LPPGPPGWPIVGNLFQVAGSGKQFFEYIRDLKPKYGSIFTLKMGSRTMIIVASAELAHEALIQKGQIFASRPRENPTRTIFSCNKFSVNAAVYGPVWRSLRRNMVQNMLSPSRLKEFREFREIAMDKLIERIRVDAKENNDVVWALKNARFAVFYILVAMCFGVEMDNEE 196          
BLAST of FC921473 vs. ExPASy Swiss-Prot
Match: CY250_MOUSE (Cytochrome P450 2C50 OS=Mus musculus GN=Cyp2c50 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 53/178 (29.78%), Postives = 85/178 (47.75%), Query Frame = 3
Query:   96 RYRLPPGPYPWPIIGNLLDVK-PDRCRCFAEWSKIYGPIMSVWIGSSLNVIVSNSELAKQVLKDCDQQLANRHR----PKAV----AIISKGGTDLVWADYGAHYVKVRRVCTLELFSPKRTEALRPIREEEVRAMIASIFKDATNSSNSLVLRKYLGSVAFNNITRLVFGKRFESEE 602
            R +LPPGP P PIIGN+L +   D C+ F   SK+YGP+ ++++G+   V++   E  K+ L D  ++ A R R     KA      I SKG    VW +     +   R     L   KR  ++    +EE R ++  + K   +  +   +   LG    N I  ++F  RF+ ++
Sbjct:   26 RGKLPPGPTPLPIIGNILQINVKDICQSFTNLSKVYGPVYTLYLGNKPTVVLHGYEAVKEALVDHGEEFAGRGRLPVFDKATNGMGIIFSKGN---VWKNTRRFSLTTLR----NLGMGKR--SIEDRVQEEARCLVEELRKTNGSPCDPTFI---LGCAPCNVICSIIFQDRFDYKD 191          
The following BLAST results are available for this feature:
BLAST of FC921473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 134
Match NameE-valueIdentityDescription
CP2CJ_HUMAN5.034e-1128.32Cytochrome P450 2C19 OS=Homo sapiens GN=CYP2C19 PE... [more]
C80A1_BERST6.575e-1127.44Berbamunine synthase OS=Berberis stolonifera GN=CY... [more]
C77A1_SOLME6.575e-1130.00Cytochrome P450 77A1 (Fragment) OS=Solanum melonge... [more]
CY250_MOUSE8.587e-1129.78Cytochrome P450 2C50 OS=Mus musculus GN=Cyp2c50 PE... [more]

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Properties
Property NameValue
Genbank descriptionC32105D04EF RVDevelopN Citrus clementina cDNA clone C32105D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921473 ID=FC921473; Name=FC921473; organism=Citrus clementina; type=EST; length=707bp
GACCTATAATTTTATTTCTTTAAATGGAACTCTTTCTCTTTATCATATCG
ATCATCATCTTCATCTTATTCGTTTACAGACTCTATCCATGGCTGAGATA
CAGGCTCCCACCTGGCCCATATCCATGGCCAATCATAGGAAACCTGTTGG
ATGTAAAACCAGACAGATGCCGGTGTTTTGCTGAGTGGTCAAAGATTTAC
GGTCCAATCATGTCCGTATGGATAGGCTCATCATTGAATGTTATAGTGTC
AAATTCAGAACTGGCCAAGCAAGTGCTCAAAGACTGTGACCAGCAGTTGG
CCAATAGGCACCGACCCAAGGCAGTGGCTATCATTTCCAAAGGTGGTACG
GATCTTGTATGGGCCGATTATGGGGCCCACTATGTTAAGGTGCGAAGAGT
ATGCACCCTTGAACTCTTCTCCCCAAAAAGGACAGAGGCCCTTAGGCCCA
TTAGAGAAGAGGAAGTTAGAGCCATGATTGCTTCTATTTTCAAAGACGCC
ACCAATAGCAGTAACAGTTTGGTTCTGAGGAAGTATTTGGGTTCCGTGGC
TTTCAACAACATTACAAGACTAGTGTTTGGGAAGAGATTTGAGAGCGAAG
AAGGGGTAGTGGATGGCCAAGGACTGGAATTCAGGGCAATTGTTGCTAAC
GAGTTCAAGCTTGGAATCCCACAGGCCTTGTGGAGCCATCAGCTGGCTAA
NGTGGAT
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