FC921478

Overview
NameFC921478
Unique NameFC921478
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921478 vs. ExPASy Swiss-Prot
Match: SGTB_RAT (Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Rattus norvegicus GN=Sgtb PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.602e-15
Identity = 41/115 (35.65%), Postives = 65/115 (56.52%), Query Frame = 1
Query:  217 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD 561
            LKD+GN   K  NY  A   YTQAI+ DP+N   + NRAAA   L     A+ D E  I+++ ++ K Y R G  L AM ++++A++++Q AL  +P++      +K   Q  ++
Sbjct:   88 LKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLSHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTAMNKFEEAVTSYQKALDLDPENDSYKSNLKIAEQKLRE 202          
BLAST of FC921478 vs. ExPASy Swiss-Prot
Match: SGTB_MOUSE (Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Mus musculus GN=Sgtb PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.602e-15
Identity = 41/115 (35.65%), Postives = 65/115 (56.52%), Query Frame = 1
Query:  217 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD 561
            LKD+GN   K  NY  A   YTQAI+ DP+N   + NRAAA   L     A+ D E  I+++ ++ K Y R G  L AM ++++A++++Q AL  +P++      +K   Q  ++
Sbjct:   88 LKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLSHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTAMNKFEEAVTSYQKALDLDPENDSYKSNLKIAEQKLRE 202          
BLAST of FC921478 vs. ExPASy Swiss-Prot
Match: RPAP3_RAT (RNA polymerase II-associated protein 3 OS=Rattus norvegicus GN=Rpap3 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.602e-15
Identity = 39/119 (32.77%), Postives = 68/119 (57.14%), Query Frame = 1
Query:  217 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA 573
            LK+KGN++FK G Y +A   YT+ +  DP NP L +NRA+A+  L K   A +D    I+L+  + K Y R+G    A+++ +DA   +   L+  P + E + +++++ Q    K+ +
Sbjct:  136 LKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRSYTKAYARRGAARFALQKLEDARKDYVKVLELEPDNFEATNELRKIDQALTSKENS 254          

HSP 2 Score: 69.3218 bits (168), Expect = 2.416e-11
Identity = 46/155 (29.68%), Postives = 74/155 (47.74%), Query Frame = 1
Query:  220 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVF 684
            KD GN FFK G Y +A   YT+ I  D +N  L +NRA A+L + K  +A  D    I L+  + K + R+G     + + ++A   F+T L   P + +   ++ R+ +   +K R  +V      +D  Q  +  K   S   G+ +  K VF
Sbjct:  286 KDLGNGFFKEGKYEQAIECYTRGIAADSTNALLPANRAMAYLKVQKYEEAERDCTQAILLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQAVTELSRIKKELIEKGRWDDV-----FLDSTQRHNVVKPVDSPHRGSPKALKKVF 435          
BLAST of FC921478 vs. ExPASy Swiss-Prot
Match: SGTB_HUMAN (Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Homo sapiens GN=SGTB PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.048e-14
Identity = 40/115 (34.78%), Postives = 65/115 (56.52%), Query Frame = 1
Query:  217 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD 561
            LKD+GN   K  NY  A   YTQAI+ DP+N   + NRAAA   L     A+ D E  I+++ ++ K Y R G  L A+ ++++A++++Q AL  +P++      +K   Q  ++
Sbjct:   88 LKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTALNKFEEAVTSYQKALDLDPENDSYKSNLKIAEQKLRE 202          
BLAST of FC921478 vs. ExPASy Swiss-Prot
Match: DNJC7_DICDI (DnaJ homolog subfamily C member 7 homolog OS=Dictyostelium discoideum GN=dnajc7 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.048e-14
Identity = 40/121 (33.06%), Postives = 69/121 (57.02%), Query Frame = 1
Query:  220 KDKGNEFFKAGNYLKAAALYTQAIKQDPS----NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKR 570
            K +GNE+F++ NY  A   +T+A+  DP     N  L+SNRAAA +HL ++++A+ D  + ++++P + K Y R+       E Y+DA+  ++ A   +P++ E+ R IK      K   R
Sbjct:  239 KKEGNEYFQSKNYQAAYDSFTEALSIDPKLETMNSQLYSNRAAALVHLNRISEAINDCTSAVTIDPNYGKAYIRRAQCQMKQENYEDAVRDYEKAQSLDPENGELQRNIKEAKIAHKKSLR 359          
BLAST of FC921478 vs. ExPASy Swiss-Prot
Match: PPP5_HUMAN (Serine/threonine-protein phosphatase 5 OS=Homo sapiens GN=PPP5C PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.369e-14
Identity = 47/166 (28.31%), Postives = 82/166 (49.40%), Query Frame = 1
Query:  217 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAE--ECWKHVFSFVVETME 708
            LK + N++FKA +Y  A   Y+QAI+ +PSN   + NR+ A+L       AL DA   I L+ ++ KGY+R+     A+ ++  AL  ++T ++  P   +   K +  +++ K K   + +        +V  LD     + ++Y     E  K   SF+ E M+
Sbjct:   31 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQ 196          
BLAST of FC921478 vs. ExPASy Swiss-Prot
Match: RPAP3_CHICK (RNA polymerase II-associated protein 3 OS=Gallus gallus GN=RPAP3 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.788e-14
Identity = 40/130 (30.77%), Postives = 74/130 (56.92%), Query Frame = 1
Query:  220 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ-LAKDKKRAQEVEN-IRSNV 603
            K+KGN++FK GN+ +A   YT+ +  DP NP L +NRA+AF  + K + A +D    ++L+  + K Y R+G    A++ +  A   ++  L+ +  + E   ++K++ Q L+ +    +E E  +RS +
Sbjct:  137 KEKGNKYFKQGNFDEAIKCYTRGMHSDPFNPVLPTNRASAFYRMKKFSVAESDCNLALALDKNYTKAYARRGAARFALKNFQGAKEDYEKVLELDANNYEAKNELKKIEQALSSESSEQKEFEEAVRSEL 266          
BLAST of FC921478 vs. ExPASy Swiss-Prot
Match: TTC28_HUMAN (Tetratricopeptide repeat protein 28 OS=Homo sapiens GN=TTC28 PE=1 SV=4)

HSP 1 Score: 78.9518 bits (193), Expect = 3.050e-14
Identity = 38/99 (38.38%), Postives = 63/99 (63.64%), Query Frame = 1
Query:  226 KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 522
            + N+    G++  A  LY +A+  DP N  L+SNR+AA++ + + +KAL DA     LNP+W K YFR+G  L+ + ++ DAL+AF + L  +P+S ++
Sbjct:   64 QSNQACHDGDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQL 162          
BLAST of FC921478 vs. ExPASy Swiss-Prot
Match: STI1L_PLAF7 (STI1-like protein OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0324 PE=4 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.050e-14
Identity = 44/143 (30.77%), Postives = 77/143 (53.85%), Query Frame = 1
Query:  220 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSE 648
            K+KGNE+FK  ++  A   Y +AI+++P++  L+SNRAAA   L++   AL D    I L+P + K Y RKG +   M+ Y  AL A+   L+ +P + E     +R +    +  ++++V+            ++FK  M++
Sbjct:  382 KNKGNEYFKNNDFPNAKKEYDEAIRRNPNDAKLYSNRAAALTKLIEYPSALEDVMKAIELDPTFVKAYSRKGNLHFFMKDYYKALQAYNKGLELDPNNKECLEGYQRCAFKIDEMSKSEKVDE-----------EQFKKSMAD 513          

HSP 2 Score: 77.411 bits (189), Expect = 8.873e-14
Identity = 41/136 (30.15%), Postives = 66/136 (48.53%), Query Frame = 1
Query:  217 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLD 624
            LK+ GN+ F+ G Y +A   ++ AI  DP +  L+SN + AF  L +  +AL  A   IS+   W KGY RKGC    + Q  +A   +   L+ +P +  +   + +V             EN+  N  ++ HL+
Sbjct:   10 LKELGNKCFQEGKYEEAVKYFSDAITNDPLDHVLYSNLSGAFASLGRFYEALESANKCISIKKDWPKGYIRKGCAEHGLRQLSNAEKTYLEGLKIDPNNKSLQDALSKVRN-----------ENMLENAQLIAHLN 134          
BLAST of FC921478 vs. ExPASy Swiss-Prot
Match: PPP5_RAT (Serine/threonine-protein phosphatase 5 OS=Rattus norvegicus GN=Ppp5c PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.050e-14
Identity = 46/166 (27.71%), Postives = 82/166 (49.40%), Query Frame = 1
Query:  217 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAE--ECWKHVFSFVVETME 708
            LK + N++FKA +Y  A   Y+QAI+ +PSN   + NR+ A+L       AL DA   I L+ ++ KGY+R+     A+ ++  AL  ++T ++  P   +   K +  S++ K K   + +        +V  LD     + ++Y     E  K   +F+ + M+
Sbjct:   31 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPNDKDAKMKYQECSKIVKQKAFERAIAGDEHRRSVVDSLDIESMTIEDEYSGPKLEDGKVTITFMKDLMQ 196          
The following BLAST results are available for this feature:
BLAST of FC921478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
SGTB_RAT3.602e-1535.65Small glutamine-rich tetratricopeptide repeat-cont... [more]
SGTB_MOUSE3.602e-1535.65Small glutamine-rich tetratricopeptide repeat-cont... [more]
RPAP3_RAT3.602e-1532.77RNA polymerase II-associated protein 3 OS=Rattus n... [more]
SGTB_HUMAN1.048e-1434.78Small glutamine-rich tetratricopeptide repeat-cont... [more]
DNJC7_DICDI1.048e-1433.06DnaJ homolog subfamily C member 7 homolog OS=Dicty... [more]
PPP5_HUMAN1.369e-1428.31Serine/threonine-protein phosphatase 5 OS=Homo sap... [more]
RPAP3_CHICK1.788e-1430.77RNA polymerase II-associated protein 3 OS=Gallus g... [more]
TTC28_HUMAN3.050e-1438.38Tetratricopeptide repeat protein 28 OS=Homo sapien... [more]
STI1L_PLAF73.050e-1430.77STI1-like protein OS=Plasmodium falciparum (isolat... [more]
PPP5_RAT3.050e-1427.71Serine/threonine-protein phosphatase 5 OS=Rattus n... [more]

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Properties
Property NameValue
Genbank descriptionC32105D09EF RVDevelopN Citrus clementina cDNA clone C32105D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921478 ID=FC921478; Name=FC921478; organism=Citrus clementina; type=EST; length=736bp
GAGATCAATTGAGCCCCGCCCCCTGACTCACAGGAACCCAAATTAGCACA
AGCATCAAACCTCGAAAAGAACCAAAAAGAAAAAAACAAGTTGTAAACGT
CTAACATAAACCCTAGCAACCGAAAAACCACAAAACACAGTGATAATTTC
TTCTTTTGTTGGAAAGATCATAGCTTTATAACTGAAAGTATGGCTGCTGA
AGCAGAGGAAATGTCATTGAAAGATAAAGGTAATGAATTTTTCAAAGCTG
GGAACTACCTTAAAGCTGCTGCTCTTTACACTCAGGCAATCAAACAAGAC
CCTTCTAATCCAACTCTTTTCAGCAACCGTGCTGCAGCATTTCTACATCT
AGTCAAGCTTAACAAAGCACTTGCTGATGCGGAGACAACAATCTCATTGA
ACCCCCAGTGGGAAAAGGGATATTTTCGGAAAGGATGCATATTGGAGGCC
ATGGAACAATATGATGATGCCTTAAGTGCCTTCCAGACAGCTTTGCAATA
TAATCCACAGAGTGCAGAAGTATCGAGAAAAATAAAGAGGGTTTCCCAGT
TGGCAAAAGACAAAAAGCGAGCTCAAGAAGTTGAGAACATAAGATCCAAT
GTCGATATGGTGCAGCATTTGGATGAGTTCAAATCTGAAATGTCTGAGAA
GTATGGAGCTGAAGAATGTTGGAAGCACGTCTTTTCATTTGTTGTTGAGA
CAATGGAGACAGCTGTGAAGTCGTGGCATGAAACTT
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