FC921478

Overview
NameFC921478
Unique NameFC921478
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921478 vs. ExPASy Swiss-Prot
Match: STI1L_PLAFA (STI1-like protein (Fragment) OS=Plasmodium falciparum PE=4 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.873e-14
Identity = 41/136 (30.15%), Postives = 66/136 (48.53%), Query Frame = 1
Query:  217 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLD 624
            LK+ GN+ F+ G Y +A   ++ AI  DP +  L+SN + AF  L +  +AL  A   IS+   W KGY RKGC    + Q  +A   +   L+ +P +  +   + +V             EN+  N  ++ HL+
Sbjct:   10 LKELGNKCFQEGKYEEAVKYFSDAITNDPLDHVLYSNLSGAFASLGRFYEALESANKCISIKKDWPKGYIRKGCAEHGLRQLSNAEKTYLEGLKIDPNNKSLQDALSKVRN-----------ENMLENAQLIAHLN 134          
BLAST of FC921478 vs. ExPASy Swiss-Prot
Match: PPP5_MOUSE (Serine/threonine-protein phosphatase 5 OS=Mus musculus GN=Ppp5c PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 8.873e-14
Identity = 45/166 (27.11%), Postives = 81/166 (48.80%), Query Frame = 1
Query:  217 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAE--ECWKHVFSFVVETME 708
            LK + N++FKA +Y  A   Y+QAI+ +P N   + NR+ A+L       AL DA   I L+ ++ KGY+R+     A+ ++  AL  ++T ++  P   +   K +  S++ K K   + +        +V  LD     + ++Y     E  K   +F+ + M+
Sbjct:   31 LKTQANDYFKAKDYENAIKFYSQAIELNPGNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPNDKDAKMKYQECSKIVKQKAFERAIAGDEHRRSVVDSLDIESMTIEDEYSGPKLEDGKVTITFMKDLMQ 196          
BLAST of FC921478 vs. ExPASy Swiss-Prot
Match: PPP5_SOLLC (Serine/threonine-protein phosphatase 5 OS=Solanum lycopersicum GN=PP5 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.159e-13
Identity = 39/107 (36.45%), Postives = 59/107 (55.14%), Query Frame = 1
Query:  217 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIK 537
            LK   NE FK   Y +A  LYTQAI+ +  N   ++NRA A   L +   A+ D    I ++P++ KGY+R+G    AM ++ DAL  FQ   +  P   + ++K+K
Sbjct:   17 LKQLANEAFKGHKYSQAIDLYTQAIELNGENAVYYANRAFAHTKLEEYGSAIQDGTRAIEIDPRYSKGYYRRGAAYLAMGKFKDALKDFQQVKKLCPNDPDATKKLK 123          
BLAST of FC921478 vs. ExPASy Swiss-Prot
Match: RPAP3_XENTR (RNA polymerase II-associated protein 3 OS=Xenopus tropicalis GN=rpap3 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.582e-13
Identity = 41/145 (28.28%), Postives = 75/145 (51.72%), Query Frame = 1
Query:  220 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVS-QLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEK 651
            K+KGN +FK+G Y +A   YT+ +  DP N  L +NRA+AF  L K   A +D    I+LN  + K Y R+G    A++    A   ++  L+ +  + E   ++++++ +L       QE E I   + +    ++ + E+ ++
Sbjct:  136 KEKGNNYFKSGQYDEAIECYTRGMDADPYNAVLPTNRASAFFRLKKYAVAESDCNLAIALNHNYAKAYARRGAARLALKDLQGAKEDYEKVLELDVNNFEAKNELRKINKELQSSTSDVQEKEAIEEKITVENEEEKKQIEIQQR 280          
BLAST of FC921478 vs. ExPASy Swiss-Prot
Match: PPP5_ARATH (Serine/threonine-protein phosphatase 5 OS=Arabidopsis thaliana GN=PAPP5 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.582e-13
Identity = 38/106 (35.85%), Postives = 60/106 (56.60%), Query Frame = 1
Query:  220 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIK 537
            K + NE FK   Y  A  LYT+AI+ + +N   ++NRA A   L +   A+ DA   I ++ ++ KGY+R+G    AM ++ DAL  FQ   + +P   + +RK+K
Sbjct:   17 KSQANEAFKGHKYSSAIDLYTKAIELNSNNAVYWANRAFAHTKLEEYGSAIQDASKAIEVDSRYSKGYYRRGAAYLAMGKFKDALKDFQQVKRLSPNDPDATRKLK 122          
BLAST of FC921478 vs. ExPASy Swiss-Prot
Match: PPT1_SCHPO (Serine/threonine-protein phosphatase T OS=Schizosaccharomyces pombe GN=ppt1 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.372e-13
Identity = 41/124 (33.06%), Postives = 67/124 (54.03%), Query Frame = 1
Query:  217 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVEN 588
            LK++ N+F K G+ ++A  LYT+AI+ D +N  L+SNR+ A L       A+ DA   I  +P++ K YFR+     A+ Q  +A+  F+ AL   P      +K++   QL K  +  + + N
Sbjct:    8 LKNEANKFLKEGHIVQAIDLYTKAIELDSTNAILYSNRSLAHLKSEDYGLAINDASKAIECDPEYAKAYFRRATAHIAIFQPKEAVGDFRKALALAPSDPAARKKLRECEQLVKRIRFQEAIHN 131          
BLAST of FC921478 vs. ExPASy Swiss-Prot
Match: RPAP3_XENLA (RNA polymerase II-associated protein 3 OS=Xenopus laevis GN=rpap3 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.281e-12
Identity = 36/110 (32.73%), Postives = 61/110 (55.45%), Query Frame = 1
Query:  220 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ 549
            K+KGN +FK+G Y +A   YT+ +  DP N  L +NRA+AF  L K   A +D    I+LN  + K Y R+G    A++    A   ++  L+ +  + E   ++++++Q
Sbjct:  136 KEKGNNYFKSGKYDEAIECYTRGMDADPYNAILPTNRASAFFRLKKFAVAESDCNLAIALNRDYAKAYARRGAARLALKNLQGAKEDYEKVLELDANNFEAKNELRKINQ 245          

HSP 2 Score: 67.781 bits (164), Expect = 7.030e-11
Identity = 42/143 (29.37%), Postives = 75/143 (52.45%), Query Frame = 1
Query:  220 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ----LAKDKKRAQEVENIRSNVDMVQHLDEFKS 636
            KD GN +FK G Y  A   Y+Q ++ D +N  L +NRA A+L + K  +A AD    ISL+  + K + R+G     + +  +A   F+  L+ +P + +   ++ ++SQ    + KD+   ++  N R  ++ V+ L   +S
Sbjct:  288 KDLGNAYFKEGKYEIAIECYSQGMEADNTNALLPANRAMAYLKIQKYKEAEADCTLAISLDASYCKAFARRGTASIMLGKQKEAKEDFEMVLKLDPGNKQAVLELAKISQELRSIEKDRNGNKD-SNQRKLINTVEKLPHLRS 429          
BLAST of FC921478 vs. ExPASy Swiss-Prot
Match: TTC1_BOVIN (Tetratricopeptide repeat protein 1 OS=Bos taurus GN=TTC1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.869e-12
Identity = 41/127 (32.28%), Postives = 71/127 (55.91%), Query Frame = 1
Query:  217 LKDKGNEFFKAGNYLKAAALYTQAIKQDPS-----NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV-SQLAKDKKRAQE 579
            LK++GNE FK G+Y++A + YT+A++  PS        LFSNRAAA +   K   A++D    I LNP + +   R+  + E  ++ D+AL  +++ L+ +P   +      R+  Q+ +  +R +E
Sbjct:  119 LKEEGNEQFKKGDYIEAESSYTRALQTCPSCFQKDRSVLFSNRAAARMKQEKKEMAISDCSKAIQLNPSYIRAILRRAELYEKTDKLDEALEDYKSILEKDPSVHQAREACMRLPKQIEERNERLKE 245          
BLAST of FC921478 vs. ExPASy Swiss-Prot
Match: STI1_SCHPO (Heat shock protein sti1 homolog OS=Schizosaccharomyces pombe GN=sti1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.869e-12
Identity = 37/112 (33.04%), Postives = 62/112 (55.36%), Query Frame = 1
Query:  226 KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV-SQLAK 558
            KGNE FK+G++  A   YT+  K+ PS+P  F NRAAA+L ++   + + D    I L+P + K Y RK   L  ++ Y+  + A   A + + +     + ++ + SQL+K
Sbjct:  405 KGNELFKSGDFANAIKEYTEMTKRAPSDPRGFGNRAAAYLKVMAPAECIRDCNKAIELDPNFAKAYVRKAQALFMLKDYNKCIDACNEASEVDRREPNTGKNLREIESQLSK 516          

HSP 2 Score: 71.2478 bits (173), Expect = 6.359e-12
Identity = 40/109 (36.70%), Postives = 56/109 (51.38%), Query Frame = 1
Query:  217 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV 543
            LK KGN  F   +Y  A   +TQAI  D  N  L+SNR+A +        AL DA     L P W KG+ RKG  L  +   D A SA++  L+++  +A++   +K V
Sbjct:    5 LKAKGNAAFSKKDYKTAIDYFTQAIGLDERNHILYSNRSACYASEKDYADALKDATKCTELKPDWAKGWSRKGAALHGLGDLDAARSAYEEGLKHDANNAQLLNGLKSV 113          
BLAST of FC921478 vs. ExPASy Swiss-Prot
Match: TTC1_MOUSE (Tetratricopeptide repeat protein 1 OS=Mus musculus GN=Ttc1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.417e-11
Identity = 40/127 (31.50%), Postives = 70/127 (55.12%), Query Frame = 1
Query:  217 LKDKGNEFFKAGNYLKAAALYTQAIKQDPS-----NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV-SQLAKDKKRAQE 579
            LK++GNE FK G+Y++A + Y+QA++  P+        LFSNRAAA +   K   A+ D    I LNP + +   R+  + E  ++ D+AL  +++ L+ +P   +      R+  Q+ +  +R +E
Sbjct:  119 LKEEGNERFKRGDYMEAESSYSQALQMCPACFQKDRSVLFSNRAAARMKQDKKETAITDCSKAIQLNPTYIRAILRRAELYEKTDKLDEALEDYKSVLEKDPSVHQAREACMRLPKQIEERNERLKE 245          
The following BLAST results are available for this feature:
BLAST of FC921478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
STI1L_PLAFA8.873e-1430.15STI1-like protein (Fragment) OS=Plasmodium falcipa... [more]
PPP5_MOUSE8.873e-1427.11Serine/threonine-protein phosphatase 5 OS=Mus musc... [more]
PPP5_SOLLC1.159e-1336.45Serine/threonine-protein phosphatase 5 OS=Solanum ... [more]
RPAP3_XENTR2.582e-1328.28RNA polymerase II-associated protein 3 OS=Xenopus ... [more]
PPP5_ARATH2.582e-1335.85Serine/threonine-protein phosphatase 5 OS=Arabidop... [more]
PPT1_SCHPO3.372e-1333.06Serine/threonine-protein phosphatase T OS=Schizosa... [more]
RPAP3_XENLA1.281e-1232.73RNA polymerase II-associated protein 3 OS=Xenopus ... [more]
TTC1_BOVIN4.869e-1232.28Tetratricopeptide repeat protein 1 OS=Bos taurus G... [more]
STI1_SCHPO4.869e-1233.04Heat shock protein sti1 homolog OS=Schizosaccharom... [more]
TTC1_MOUSE1.417e-1131.50Tetratricopeptide repeat protein 1 OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionC32105D09EF RVDevelopN Citrus clementina cDNA clone C32105D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921478 ID=FC921478; Name=FC921478; organism=Citrus clementina; type=EST; length=736bp
GAGATCAATTGAGCCCCGCCCCCTGACTCACAGGAACCCAAATTAGCACA
AGCATCAAACCTCGAAAAGAACCAAAAAGAAAAAAACAAGTTGTAAACGT
CTAACATAAACCCTAGCAACCGAAAAACCACAAAACACAGTGATAATTTC
TTCTTTTGTTGGAAAGATCATAGCTTTATAACTGAAAGTATGGCTGCTGA
AGCAGAGGAAATGTCATTGAAAGATAAAGGTAATGAATTTTTCAAAGCTG
GGAACTACCTTAAAGCTGCTGCTCTTTACACTCAGGCAATCAAACAAGAC
CCTTCTAATCCAACTCTTTTCAGCAACCGTGCTGCAGCATTTCTACATCT
AGTCAAGCTTAACAAAGCACTTGCTGATGCGGAGACAACAATCTCATTGA
ACCCCCAGTGGGAAAAGGGATATTTTCGGAAAGGATGCATATTGGAGGCC
ATGGAACAATATGATGATGCCTTAAGTGCCTTCCAGACAGCTTTGCAATA
TAATCCACAGAGTGCAGAAGTATCGAGAAAAATAAAGAGGGTTTCCCAGT
TGGCAAAAGACAAAAAGCGAGCTCAAGAAGTTGAGAACATAAGATCCAAT
GTCGATATGGTGCAGCATTTGGATGAGTTCAAATCTGAAATGTCTGAGAA
GTATGGAGCTGAAGAATGTTGGAAGCACGTCTTTTCATTTGTTGTTGAGA
CAATGGAGACAGCTGTGAAGTCGTGGCATGAAACTT
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