FC921478

Overview
NameFC921478
Unique NameFC921478
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921478 vs. ExPASy Swiss-Prot
Match: STI1_YEAST (Heat shock protein STI1 OS=Saccharomyces cerevisiae GN=STI1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.416e-11
Identity = 41/137 (29.93%), Postives = 74/137 (54.01%), Query Frame = 1
Query:  220 KDKGNEFFKAGNYLKAAALYTQAIK-QDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV--SQLAKDKKRAQEVENIRSNVDMVQHL 621
            K +GN  F A +Y KA  L+T+AI+  +  N  L+SNR+A +  L K + AL DA   + +NP W KGY R G     +   D+A S ++ AL+ +  +      + +V  +Q A+  +    +  + ++ +++++L
Sbjct:    9 KQQGNAAFTAKDYDKAIELFTKAIEVSETPNHVLYSNRSACYTSLKKFSDALNDANECVKINPSWSKGYNRLGAAHLGLGDLDEAESNYKKALELDASNKAAKEGLDQVHRTQQARQAQPDLGLTQLFADPNLIENL 145          
BLAST of FC921478 vs. ExPASy Swiss-Prot
Match: SGTA_BOVIN (Small glutamine-rich tetratricopeptide repeat-containing protein alpha OS=Bos taurus GN=SGTA PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.416e-11
Identity = 35/107 (32.71%), Postives = 59/107 (55.14%), Query Frame = 1
Query:  217 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIK 537
            LK +GNE  K  N+  A   Y +AI+ +P+N   F NRAAA+  L     A+ D E  I ++P + K Y R G  L ++ ++ +A++ ++ AL+ +P +      +K
Sbjct:   94 LKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPSYSKAYGRMGLALSSLNKHTEAVAYYRKALELDPDNETYKSNLK 200          
BLAST of FC921478 vs. ExPASy Swiss-Prot
Match: DNJC7_SCHPO (DnaJ homolog subfamily C member 7 homolog OS=Schizosaccharomyces pombe GN=SPBC543.02c PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.416e-11
Identity = 35/121 (28.93%), Postives = 71/121 (58.68%), Query Frame = 1
Query:  220 KDKGNEFFKAGNYLKAAALYTQAIKQDPSN----PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKR 570
            K++GN+ F+ GNY  A   Y++A++ DP N      L+ NRA   L L +  +AL+D++  ++++  + KG   +    EA+E++++A+   Q+A++ +   A + ++++R+    K  KR
Sbjct:  227 KNQGNDLFRQGNYQDAYEKYSEALQIDPDNKETVAKLYMNRATVLLRLKRPEEALSDSDNALAIDSSYLKGLKVRAKAHEALEKWEEAVRDVQSAIELDASDANLRQELRRLQLELKKSKR 347          
BLAST of FC921478 vs. ExPASy Swiss-Prot
Match: SGTA_RAT (Small glutamine-rich tetratricopeptide repeat-containing protein alpha OS=Rattus norvegicus GN=Sgta PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.156e-11
Identity = 36/107 (33.64%), Postives = 60/107 (56.07%), Query Frame = 1
Query:  217 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIK 537
            LK +GNE  K  N+  A  LY +AI+ +P+N   F NRAAA+  L     A+ D E  I ++P + K Y R G  L ++ ++ +A++ ++ AL+ +P +      +K
Sbjct:   94 LKTEGNEQMKLENFEAAVHLYGKAIELNPANAVYFCNRAAAYSKLGNYVGAVQDCERAIGIDPGYSKAYGRMGLALSSLNKHAEAVAYYKKALELDPDNDTYKSNLK 200          
BLAST of FC921478 vs. ExPASy Swiss-Prot
Match: SGTA_MOUSE (Small glutamine-rich tetratricopeptide repeat-containing protein alpha OS=Mus musculus GN=Sgta PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.156e-11
Identity = 36/107 (33.64%), Postives = 60/107 (56.07%), Query Frame = 1
Query:  217 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIK 537
            LK +GNE  K  N+  A  LY +AI+ +P+N   F NRAAA+  L     A+ D E  I ++P + K Y R G  L ++ ++ +A++ ++ AL+ +P +      +K
Sbjct:   95 LKTEGNEQMKLENFEAAVHLYGKAIELNPANAVYFCNRAAAYSKLGNYVGAVQDCERAIGIDPGYSKAYGRMGLALSSLNKHAEAVAYYKKALELDPDNDTYKSNLK 201          
BLAST of FC921478 vs. ExPASy Swiss-Prot
Match: TTC1_HUMAN (Tetratricopeptide repeat protein 1 OS=Homo sapiens GN=TTC1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.122e-11
Identity = 40/127 (31.50%), Postives = 70/127 (55.12%), Query Frame = 1
Query:  217 LKDKGNEFFKAGNYLKAAALYTQAIKQDPS-----NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV-SQLAKDKKRAQE 579
            LK++GNE FK G+Y++A + Y++A++  PS        LFSNRAAA +   K   A+ D    I LNP + +   R+  + E  ++ D+AL  +++ L+ +P   +      R+  Q+ +  +R +E
Sbjct:  119 LKEEGNEQFKKGDYIEAESSYSRALEMCPSCFQKERSILFSNRAAARMKQDKKEMAINDCSKAIQLNPSYIRAILRRAELYEKTDKLDEALEDYKSILEKDPSIHQAREACMRLPKQIEERNERLKE 245          
BLAST of FC921478 vs. ExPASy Swiss-Prot
Match: SGTA_HUMAN (Small glutamine-rich tetratricopeptide repeat-containing protein alpha OS=Homo sapiens GN=SGTA PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.383e-11
Identity = 35/107 (32.71%), Postives = 59/107 (55.14%), Query Frame = 1
Query:  217 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIK 537
            LK +GNE  K  N+  A   Y +AI+ +P+N   F NRAAA+  L     A+ D E  I ++P + K Y R G  L ++ ++ +A++ ++ AL+ +P +      +K
Sbjct:   94 LKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLK 200          
BLAST of FC921478 vs. ExPASy Swiss-Prot
Match: STUB1_CHICK (STIP1 homology and U box-containing protein 1 OS=Gallus gallus GN=STUB1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.182e-11
Identity = 47/145 (32.41%), Postives = 72/145 (49.66%), Query Frame = 1
Query:  220 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY-NPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEK 651
            K++GN  F    Y +AAA Y +AI ++P     ++NRA  +L + + +KALAD +  + L+ Q  K +F  G     ME YD+A++  Q A      Q       I    ++AK KKR   +E  R N +   H    +  M+EK
Sbjct:   40 KEQGNRLFGGRKYPEAAAAYGRAINRNPLVAVYYTNRALCYLKMQQHDKALADCKRALELDGQSVKAHFFLGQCQMEMENYDEAIANLQRAYNLAKEQRLNFGDDIPSALRIAK-KKRWNSIEEKRINQENELHSYLTRLIMAEK 183          
BLAST of FC921478 vs. ExPASy Swiss-Prot
Match: SGT2_SCHPO (Small glutamine-rich tetratricopeptide repeat-containing protein 2 OS=Schizosaccharomyces pombe GN=sgt2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.182e-11
Identity = 37/111 (33.33%), Postives = 63/111 (56.76%), Query Frame = 1
Query:  217 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ 549
            LK +GN    A +Y KA  LYT+AI+ DP++P  +SNRAAA+  L +   A+ DA T +SL+P   + + R G    ++     A  A++  L ++P +  + R ++  ++
Sbjct:   86 LKLEGNNAIAAKDYQKALDLYTKAIEIDPTSPVYYSNRAAAYNQLGQFENAVEDALTCLSLDPHHARAFGRLGRAKLSLGDAAAAADAYKKGLDFDPNNEVLKRGLEAANK 196          
The following BLAST results are available for this feature:
BLAST of FC921478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
STI1_YEAST2.416e-1129.93Heat shock protein STI1 OS=Saccharomyces cerevisia... [more]
SGTA_BOVIN2.416e-1132.71Small glutamine-rich tetratricopeptide repeat-cont... [more]
DNJC7_SCHPO2.416e-1128.93DnaJ homolog subfamily C member 7 homolog OS=Schiz... [more]
SGTA_RAT3.156e-1133.64Small glutamine-rich tetratricopeptide repeat-cont... [more]
SGTA_MOUSE3.156e-1133.64Small glutamine-rich tetratricopeptide repeat-cont... [more]
TTC1_HUMAN4.122e-1131.50Tetratricopeptide repeat protein 1 OS=Homo sapiens... [more]
SGTA_HUMAN5.383e-1132.71Small glutamine-rich tetratricopeptide repeat-cont... [more]
STUB1_CHICK9.182e-1132.41STIP1 homology and U box-containing protein 1 OS=G... [more]
SGT2_SCHPO9.182e-1133.33Small glutamine-rich tetratricopeptide repeat-cont... [more]

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Properties
Property NameValue
Genbank descriptionC32105D09EF RVDevelopN Citrus clementina cDNA clone C32105D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921478 ID=FC921478; Name=FC921478; organism=Citrus clementina; type=EST; length=736bp
GAGATCAATTGAGCCCCGCCCCCTGACTCACAGGAACCCAAATTAGCACA
AGCATCAAACCTCGAAAAGAACCAAAAAGAAAAAAACAAGTTGTAAACGT
CTAACATAAACCCTAGCAACCGAAAAACCACAAAACACAGTGATAATTTC
TTCTTTTGTTGGAAAGATCATAGCTTTATAACTGAAAGTATGGCTGCTGA
AGCAGAGGAAATGTCATTGAAAGATAAAGGTAATGAATTTTTCAAAGCTG
GGAACTACCTTAAAGCTGCTGCTCTTTACACTCAGGCAATCAAACAAGAC
CCTTCTAATCCAACTCTTTTCAGCAACCGTGCTGCAGCATTTCTACATCT
AGTCAAGCTTAACAAAGCACTTGCTGATGCGGAGACAACAATCTCATTGA
ACCCCCAGTGGGAAAAGGGATATTTTCGGAAAGGATGCATATTGGAGGCC
ATGGAACAATATGATGATGCCTTAAGTGCCTTCCAGACAGCTTTGCAATA
TAATCCACAGAGTGCAGAAGTATCGAGAAAAATAAAGAGGGTTTCCCAGT
TGGCAAAAGACAAAAAGCGAGCTCAAGAAGTTGAGAACATAAGATCCAAT
GTCGATATGGTGCAGCATTTGGATGAGTTCAAATCTGAAATGTCTGAGAA
GTATGGAGCTGAAGAATGTTGGAAGCACGTCTTTTCATTTGTTGTTGAGA
CAATGGAGACAGCTGTGAAGTCGTGGCATGAAACTT
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