FC921479

Overview
NameFC921479
Unique NameFC921479
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921479 vs. ExPASy Swiss-Prot
Match: PER6_ARATH (Peroxidase 6 OS=Arabidopsis thaliana GN=PER6 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.717e-28
Identity = 59/160 (36.88%), Postives = 90/160 (56.25%), Query Frame = 2
Query:  140 AQLSTNFYANTCKNLLPTVKSVVQSAISKEARMGASLLRLFFHDCFVNGCDGSVLLDNTSSFTGEKNANANRN-SARGFEVIDNIKSAVEKACPGVVSCADILAITARDSVVILGGPSWQVKLGRRDARTASLSAANSGIPAPTSNLNQLISRFNALGLS 616
            A LS+++Y  TC     T+  +V              LRLFFHDC V+GCD S+L+ +T   T E++A+ NR+     F+VI  IK+AVE  CP +VSC+DIL    R  + ++GGP   VK GR+D+  + ++     +  P   ++ +IS F + GL+
Sbjct:   20 ANLSSDYYTKTCPEFEETLVQIVTDKQIAAPTTAVGTLRLFFHDCMVDGCDASILVASTPRKTSERDADINRSLPGDAFDVITRIKTAVELKCPNIVSCSDILVGATRSLISMVGGPRVNVKFGRKDSLVSDMNRVEGKLARPNMTMDHIISIFESSGLT 179          

HSP 2 Score: 28.4906 bits (62), Expect = 3.717e-28
Identity = 11/20 (55.00%), Postives = 14/20 (70.00%), Query Frame = 1
Query:  619 QDLVALAGGHTIGQARCTSF 678
            Q++VAL G HTIG + C  F
Sbjct:  181 QEMVALVGAHTIGFSHCKEF 200          
BLAST of FC921479 vs. ExPASy Swiss-Prot
Match: PER8_ARATH (Peroxidase 8 OS=Arabidopsis thaliana GN=PER8 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.201e-27
Identity = 65/167 (38.92%), Postives = 92/167 (55.09%), Query Frame = 2
Query:  131 STNAQLSTNFYANTCKNLLPTVKSVVQSAISKEARMGASLLRLFFHDCFVNGCDGSVLLDNTSSFTGEKNANANRNSARGFEVIDNIKSAVEKACPGVVSCADILAITARDSVVILGGPSWQVKLGRRDARTASLSAANSGIPAPTSNLNQLISRFNALGLSNRTLL 631
            S  AQL   FY  TC      V  VV +   +   + A+LLR+ FHDC V GCD S+L+D T+    EK+   N    RGFE+ID  K  +E  CP  VSCADI+ I  RDS+ + GGP ++V+ GRRD   ++ S     +  PT ++   I  F ++G +  T++
Sbjct:   17 SVFAQLRHGFYEGTCPPAESIVGRVVFNHWDRNRTVTAALLRMQFHDCVVKGCDASLLIDPTTERPSEKSVGRNAG-VRGFEIIDEAKKELELVCPKTVSCADIVTIATRDSIALAGGPKFKVRTGRRDGLRSNPSDVK--LLGPTVSVATSIKAFKSIGFNVSTMV 180          

HSP 2 Score: 25.0238 bits (53), Expect = 5.201e-27
Identity = 8/16 (50.00%), Postives = 12/16 (75.00%), Query Frame = 1
Query:  634 LAGGHTIGQARCTSFR 681
            + GGHT+G A C+ F+
Sbjct:  183 IGGGHTVGVAHCSLFQ 198          
BLAST of FC921479 vs. ExPASy Swiss-Prot
Match: PER61_ARATH (Probable peroxidase 61 OS=Arabidopsis thaliana GN=PER61 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.223e-27
Identity = 77/217 (35.48%), Postives = 115/217 (53.00%), Query Frame = 2
Query:   80 FFKFFLTLALLVLAMGSSTNAQLST----------NFY--ANTCKNLLPTVKSVVQSAISKEARMGASLLRLFFHDCFVNGCDGSVLLDNTSSFTGEKNANANRNSARGFEVIDNIKSAVEKACPGVVSCADILAITARDSVVILGGPSWQVKLGRRDARTASLSAANSGIPAPTSNLNQLISRFNALGLS--NRTLLL*QVDIQSDRRGAHHSGLT 688
            F  FF  LAL+V+++      + +T          ++Y   NTC +    ++  V+     ++ +   LLRL + DC VNGCDGS+LL   +S   E+ A  NR    GF +ID IK  +E  CPGVVSCADIL +  RD+V + G PS+ V  GRRD  T +  A +  +P+P+ ++++ ++ F + GL   + T LL          GAH  G T
Sbjct:    3 FVNFFPLLALVVISLAGKATVEAATGLNPPVKLVWHYYKLTNTCDDAETYIRYQVEKFYKNDSSIAPKLLRLLYSDCMVNGCDGSILLQGPNS---ERTAPQNRGLG-GFVIIDKIKQVLESRCPGVVSCADILNLATRDAVHMAGAPSYPVFTGRRDGGTLNADAVD--LPSPSISVDESLAYFKSKGLDVLDMTTLL----------GAHSMGKT 203          
BLAST of FC921479 vs. ExPASy Swiss-Prot
Match: PER24_ARATH (Peroxidase 24 OS=Arabidopsis thaliana GN=PER24 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.939e-26
Identity = 62/154 (40.26%), Postives = 82/154 (53.25%), Query Frame = 2
Query:  143 QLSTNFYANTCKNLLPTVKSVVQSAISKEARMGASLLRLFFHDCFVNGCDGSVLLDNTS-SFTGEKNANANRNSARGFEVIDNIKSAVEKACPGVVSCADILAITARDSVVI-LGGPSWQVKLGRRDARTASLSAANSGIPAPTSNLNQLISRF 598
            +L  NFY N+C      V+ +V   +     +   LLR+ +HDCFV GCD S+LLD+ +     EK A  N  S  GFE+ID IK  +EK CP  VSCADIL + ARD+V      P W V  GR D R +  + A   +P+  +N   L   F
Sbjct:   45 KLKMNFYHNSCPGAEDIVRQIVWKKVEANRSLAPKLLRVHYHDCFVRGCDASLLLDSVAGKAVSEKEARPNL-SLSGFEIIDEIKYILEKRCPNTVSCADILTLAARDAVSYEFERPLWNVFTGRVDGRVSLATEAARDLPSAGANFTTLQKLF 197          

HSP 2 Score: 29.261 bits (64), Expect = 1.939e-26
Identity = 13/19 (68.42%), Postives = 14/19 (73.68%), Query Frame = 1
Query:  622 DLVALAGGHTIGQARCTSF 678
            DLVAL+G HTIG A C  F
Sbjct:  206 DLVALSGAHTIGIAHCGVF 224          
BLAST of FC921479 vs. ExPASy Swiss-Prot
Match: PER21_ARATH (Peroxidase 21 OS=Arabidopsis thaliana GN=PER21 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 5.574e-26
Identity = 62/175 (35.43%), Postives = 96/175 (54.86%), Query Frame = 2
Query:   92 FLTLALLVLAMGSSTNAQLSTNFYANTCKNLLPTVKSVVQSAISKEARMGASLLRLFFHDCFVNGCDGSVLLDNTSSFTGEKNANANRNSARGFEVIDNIKSAVEKACPGVVSCADILAITARDSVVILGGPSWQ-VKLGRRDARTASLSAANSGIPAPTSNLNQLISRFNALGL 613
            F  L L + ++    N +L  N+Y  +C      ++  V++   K      S LR  FHDC V  CD S+LL+       E+ +  +    R F+ +  IK A+EK CP  VSCADI+A++ARD +V+L GP  + +K GRRD+R + L    + IP    +L+ +IS FN++G+
Sbjct:   12 FFCLLLQLFSIFHIGNGELEMNYYKESCPKAEEIIRQQVETLYYKHGNTAVSWLRNLFHDCVVKSCDASLLLETARGVESEQKSKRSFGM-RNFKYVKIIKDALEKECPSTVSCADIVALSARDGIVMLKGPKIEMIKTGRRDSRGSYLGDVETLIPNHNDSLSSVISTFNSIGI 185          

HSP 2 Score: 22.3274 bits (46), Expect = 5.574e-26
Identity = 7/16 (43.75%), Postives = 11/16 (68.75%), Query Frame = 1
Query:  628 VALAGGHTIGQARCTS 675
            VAL G H++G+  C +
Sbjct:  191 VALLGAHSVGRVHCVN 206          
BLAST of FC921479 vs. ExPASy Swiss-Prot
Match: PER26_ARATH (Probable peroxidase 26 OS=Arabidopsis thaliana GN=PER26 PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 5.824e-25
Identity = 69/169 (40.83%), Postives = 100/169 (59.17%), Query Frame = 2
Query:  116 LAMGSSTNAQLSTNFYA--NTCKNLLPTVKSVVQSAISKEARMGASLLRLFFHDCFVNGCDGSVLLDNTSSFTGEKNANANRNSARGFEVIDNIKSAVEKACPGVVSCADILAITARDSVVILGGPSWQVKLGRRDARTASLSAANSGIPAPTSNLNQLISRFNALGLS 616
            + MG S   +L+ ++Y   NTC+N    V+  V+     +  +   LLRL + DCFV+GCD SVLL+  +S   EK A  NR    GF +ID IK  +E+ CPGVVSCADIL +  RD+V + G PS+ V  GRRD  T+     +  +P+P+ + +Q +S F + GL+
Sbjct:   26 IVMGPSMQ-KLTWHYYKVYNTCENAENFVRHQVEIFYKNDKSIAPKLLRLLYSDCFVSGCDASVLLEGPNS---EKMAPQNRGLG-GFVLIDKIKIVLEQRCPGVVSCADILNLATRDAVHLAGAPSYPVFTGRRDGLTSDKQTVD--LPSPSISWDQAMSYFKSRGLN 187          
BLAST of FC921479 vs. ExPASy Swiss-Prot
Match: PER42_ARATH (Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 7.774e-25
Identity = 58/162 (35.80%), Postives = 88/162 (54.32%), Query Frame = 2
Query:  146 LSTNFYANTCKNLLPTVKSVVQSAISKEARMGASLLRLFFHDCFVNGCDGSVLLDNTSSFTGEKNANANRNSARGFEVIDNIKSAVEKACPGVVSCADILAITARDSVVILGGPSWQVKLGRRDARTASLSAANSGIPAPTSNLNQLISRFNALGLSNRTLL 631
            L  NFY +TC      V+  V+    +      S LR  FHDC V  CD S+LLD+T    GEK  + +    R F  I+ IK A+E+ CPGVVSC+DIL ++AR+ +  +GGP   +K GRRD   +      S +P    +++ ++ +F ++G+    L+
Sbjct:   31 LMMNFYKDTCPQAEDIVREQVKLLYKRHKNTAFSWLRNIFHDCAVESCDASLLLDSTRRELGEKEHDRSFG-LRNFRYIEEIKEALERECPGVVSCSDILVLSAREGIEAVGGPYIPLKTGRRDGLKSRTDMLESYLPDHNESISVVLEKFKSIGIDTPGLV 191          

HSP 2 Score: 23.483 bits (49), Expect = 7.774e-25
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 1
Query:  625 LVALAGGHTIGQARC 669
            LVAL G H++G+  C
Sbjct:  190 LVALLGSHSVGRTHC 204          
BLAST of FC921479 vs. ExPASy Swiss-Prot
Match: PER29_ARATH (Peroxidase 29 OS=Arabidopsis thaliana GN=PER29 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.705e-22
Identity = 65/213 (30.52%), Postives = 110/213 (51.64%), Query Frame = 2
Query:   53 LASYQSMASFFKFFLTLALLVLAMGSSTNAQLSTNFYANTCKNLLPTVKSVVQSAISKEARMGASLLRLFFHDCFVNGCDGSVLLDNTSSFTGEKNANANRNSARGFEVIDNIKSAVEKACPGVVSCADILAITARDSVVILGGPSWQVKLGRRDA-RTASLSAANSGIPAPTSNLNQLISRFNALGLSNRTLLL*QVDIQSDRRGAHHSGLT 688
            +A   + + F    L  + ++     + N  LS ++Y  TC  +   V+S + S    +    A+LLRL FHDC V GCD S+LL+        +  +A     R  +++ +IK+++E  CP  VSC+D++ + ARD+V + GGP   V LGR+D+  T S   A+S +P  T++++  +S F   G++        ++      GAH  G+T
Sbjct:    7 VAESTAASCFLVMSLLCSCIIGDQMETNNEGLSYSYYEKTCPKVEEIVRSSLSSMFILDPTSPAALLRLMFHDCQVQGCDASILLEPIRDQQFTELDSAKNFGIRKRDLVGSIKTSLELECPKQVSCSDVIILAARDAVALTGGPLISVPLGRKDSLSTPSKHVADSELPPSTADVDTTLSLFANKGMT--------IEESVAIMGAHTIGVT 211          
BLAST of FC921479 vs. ExPASy Swiss-Prot
Match: PERX_WHEAT (Peroxidase (Fragment) OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.897e-16
Identity = 43/78 (55.13%), Postives = 55/78 (70.51%), Query Frame = 2
Query:  365 RGFEVIDNIKSAVEKACPGVVSCADILAITARDSVVILGGPSWQVKLGRRDARTASLSAANSGIPAPTSNLNQLISRF 598
            RGF VID+IK+ +E  C   VSCADIL + ARDSVV LGGPSW V LGRRD+  A+ + ANS +P   S+ ++L + F
Sbjct:    3 RGFGVIDSIKTQIEAICNQTVSCADILTVAARDSVVALGGPSWTVPLGRRDSIDANEAEANSDLPGFNSSRSELEAAF 80          
The following BLAST results are available for this feature:
BLAST of FC921479 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
PER6_ARATH3.717e-2836.88Peroxidase 6 OS=Arabidopsis thaliana GN=PER6 PE=2 ... [more]
PER8_ARATH5.201e-2738.92Peroxidase 8 OS=Arabidopsis thaliana GN=PER8 PE=2 ... [more]
PER61_ARATH6.223e-2735.48Probable peroxidase 61 OS=Arabidopsis thaliana GN=... [more]
PER24_ARATH1.939e-2640.26Peroxidase 24 OS=Arabidopsis thaliana GN=PER24 PE=... [more]
PER21_ARATH5.574e-2635.43Peroxidase 21 OS=Arabidopsis thaliana GN=PER21 PE=... [more]
PER26_ARATH5.824e-2540.83Probable peroxidase 26 OS=Arabidopsis thaliana GN=... [more]
PER42_ARATH7.774e-2535.80Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=... [more]
PER29_ARATH2.705e-2230.52Peroxidase 29 OS=Arabidopsis thaliana GN=PER29 PE=... [more]
PERX_WHEAT2.897e-1655.13Peroxidase (Fragment) OS=Triticum aestivum PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionC32105D10EF RVDevelopN Citrus clementina cDNA clone C32105D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921479 ID=FC921479; Name=FC921479; organism=Citrus clementina; type=EST; length=689bp
GAACCAAATCAACTTCAAATTCTACAGTACTACTACTGTATTCTATTGAT
GATTAGCTAGCTATCAATCAATGGCTTCGTTTTTCAAGTTCTTTCTGACT
TTGGCACTCCTTGTGCTTGCCATGGGGAGCAGCACAAACGCTCAACTCTC
TACAAATTTCTACGCAAACACTTGCAAAAACCTCCTCCCCACTGTGAAAT
CTGTCGTGCAATCTGCTATTTCAAAAGAGGCTCGCATGGGCGCCTCTCTC
CTTCGCTTGTTCTTCCACGATTGCTTCGTTAACGGATGCGATGGATCAGT
TCTACTGGACAACACATCATCTTTCACTGGAGAGAAAAATGCGAATGCCA
ATCGTAACTCCGCCCGCGGATTCGAGGTCATCGACAACATTAAGTCCGCA
GTTGAGAAAGCTTGCCCCGGTGTGGTCTCTTGTGCTGATATATTAGCCAT
TACTGCTCGAGACTCAGTTGTTATACTTGGAGGCCCAAGCTGGCAAGTAA
AACTCGGAAGGAGAGATGCTAGAACTGCAAGCCTATCTGCTGCTAATAGC
GGCATTCCAGCTCCTACCTCAAACTTGAATCAACTCATCTCTAGGTTCAA
CGCTCTCGGACTTTCCAACAGGACCTTGTTGCTTTAGCAGGTGGACATAC
AATCGGACAGGCGAGGTGCACATCATTCAGGNCTCACAT
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