FC921479

Overview
NameFC921479
Unique NameFC921479
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921479 vs. ExPASy Swiss-Prot
Match: PER18_ARATH (Peroxidase 18 OS=Arabidopsis thaliana GN=PER18 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.975e-33
Identity = 74/183 (40.44%), Postives = 109/183 (59.56%), Query Frame = 2
Query:   86 KFFLTLALLVLAMGSSTNAQLSTNFYANTCKNLLPTVKSVVQSAISKEARMGASLLRLFFHDCFVNGCDGSVLLDNTSSFTGEKNANANRNSARGFEVIDNIKSAVEKACPGVVSCADILAITARDSVVILGGPSWQVKLGRRDARTASLSAANSGIPAPTSNLNQLISRFNALGLSNRTLLL 634
            K+    +LL+L + SS+ A+LS NFYA +C      V++ V+SA S +  +   LLRL FHDCFV GCDGSVL+       G + ++    S  GF VI+++K+ +E  CPG VSCADIL + ARD+V  LGGP   +  GRRD R +  +     I      ++++I+ F++ GLS   L++
Sbjct:   11 KYTFLSSLLLLLLLSSSVAELSFNFYAGSCPGAELIVRNTVRSASSSDPSVLGKLLRLIFHDCFVQGCDGSVLIRGN----GTERSDPGNASLGGFAVIESVKNILEIFCPGTVSCADILVLAARDAVEALGGPVVPIPTGRRDGRVSMAANVRPNIIDTDFTVDKMINIFSSKGLSVHDLVV 189          

HSP 2 Score: 30.4166 bits (67), Expect = 1.975e-33
Identity = 12/19 (63.16%), Postives = 14/19 (73.68%), Query Frame = 1
Query:  622 DLVALAGGHTIGQARCTSF 678
            DLV L+G HTIG A C +F
Sbjct:  186 DLVVLSGAHTIGAAHCNTF 204          
BLAST of FC921479 vs. ExPASy Swiss-Prot
Match: PER73_ARATH (Peroxidase 73 OS=Arabidopsis thaliana GN=PER73 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.773e-32
Identity = 72/171 (42.11%), Postives = 102/171 (59.65%), Query Frame = 2
Query:   95 LTLALLVLAMGSSTNAQLSTNFYANTCKNLLPTVKSVVQSAISKEARMGASLLRLFFHDCFVNGCDGSVLLDNTSSFTGEKNANANRNSA-RGFEVIDNIKSAVE--KACPGVVSCADILAITARDSVVILGGPSWQVKLGRRDARTASLSAANSGIPAPTSNLNQLISRF 598
            +TL+L +     +T AQL TNFY N+C N+   VK VVQ  I +      + LRLFFHDCFVNGCD SV++ +T +   EK+   N + A  GF+V+   K A++   +C   VSCADILA+  RD VV   GPS+ V+LGR D   ++ ++ N  +P P + + +L   F
Sbjct:   10 VTLSLAISMFPDTTTAQLKTNFYGNSCPNVEQIVKKVVQEKIKQTFVTIPATLRLFFHDCFVNGCDASVMIQSTPTNKAEKDHPDNISLAGDGFDVVIKAKKALDAIPSCKNKVSCADILALATRDVVVAAKGPSYAVELGRFDGLVSTAASVNGNLPGPNNKVTELNKLF 180          

HSP 2 Score: 27.7202 bits (60), Expect = 2.773e-32
Identity = 9/23 (39.13%), Postives = 17/23 (73.91%), Query Frame = 1
Query:  601 RSRTFQQDLVALAGGHTIGQARC 669
            +++  Q+D++AL+  HT+G A C
Sbjct:  182 KNKLTQEDMIALSAAHTLGFAHC 204          
BLAST of FC921479 vs. ExPASy Swiss-Prot
Match: PER51_ARATH (Peroxidase 51 OS=Arabidopsis thaliana GN=PER51 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.773e-32
Identity = 76/183 (41.53%), Postives = 109/183 (59.56%), Query Frame = 2
Query:  101 LALLVLAMGSSTN---AQLSTNFYANTCKNLLPTVKSVVQSAISKEARMGASLLRLFFHDCFVNGCDGSVLLDNTSSFTGEKNANANRNSA-RGFEVIDNIKSAVEKA--CPGVVSCADILAITARDSVVILGGPSWQVKLGRRDARTASLSAANSGIPAPTSNLNQLISRFNALGLSNRTLL 631
            L LL+L++  + N   AQL  +FYA TC N+   V++ VQ  I +      + LRL+FHDCFVNGCD SV++ +T++   EK+   N + A  GF+ +   K AV+    C   VSCADIL +  RD V + GGP + V+LGRRD  ++S S+    +P PT +LNQL + F   GLS   ++
Sbjct:    9 LLLLILSLFLAINLSSAQLRGDFYAGTCPNVEQIVRNAVQKKIQQTFTTIPATLRLYFHDCFVNGCDASVMIASTNTNKAEKDHEDNLSLAGDGFDTVIKAKEAVDAVPNCRNKVSCADILTMATRDVVNLAGGPQYAVELGRRDGLSSSASSVTGKLPKPTFDLNQLNALFAENGLSPNDMI 191          

HSP 2 Score: 28.4906 bits (62), Expect = 2.773e-32
Identity = 10/17 (58.82%), Postives = 14/17 (82.35%), Query Frame = 1
Query:  622 DLVALAGGHTIGQARCT 672
            D++AL+G HT+G A CT
Sbjct:  189 DMIALSGAHTLGFAHCT 205          
BLAST of FC921479 vs. ExPASy Swiss-Prot
Match: PER12_ARATH (Peroxidase 12 OS=Arabidopsis thaliana GN=PER12 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.965e-32
Identity = 74/196 (37.76%), Postives = 111/196 (56.63%), Query Frame = 2
Query:   17 KFYSTTTVFY**LASYQSMASFFKFFLTLALLVLAMGSSTNAQLSTNFYANTCKNLLPTVKSVVQSAISKEARMGASLLRLFFHDCFVNGCDGSVLLDNTSSFTGEKNANANRN-SARGFEVIDNIKSAVEKACPGVVSCADILAITARDSVVILGGPSWQVKLGRRDART-ASLSAANSGIPAPTSNLNQLISRF 598
            K YST  + +  L S   MA     F T+     +  +     LS NFY   C  +   ++  ++    ++  + A++LR+ FHDCFV GC+ SVLL  ++S  GE+++  N     + F VI+N+++ V+K C  VVSC+DILA+ ARDSVV+ GGP + V LGRRD+   AS     + +P P  N +QLI+ F
Sbjct:    3 KAYSTRVLTFLILISL--MAVTLNLFPTVEAKKRSRDAPIVKGLSWNFYQKACPKVENIIRKELKKVFKRDIGLAAAILRIHFHDCFVQGCEASVLLAGSASGPGEQSSIPNLTLRQQAFVVINNLRALVQKKCGQVVSCSDILALAARDSVVLSGGPDYAVPLGRRDSLAFASQETTLNNLPPPFFNASQLIADF 196          

HSP 2 Score: 34.2686 bits (77), Expect = 7.965e-32
Identity = 15/19 (78.95%), Postives = 16/19 (84.21%), Query Frame = 1
Query:  622 DLVALAGGHTIGQARCTSF 678
            DLVAL+GGHTIG A C SF
Sbjct:  205 DLVALSGGHTIGIAHCPSF 223          
BLAST of FC921479 vs. ExPASy Swiss-Prot
Match: PER45_ARATH (Peroxidase 45 OS=Arabidopsis thaliana GN=PER45 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.039e-31
Identity = 74/190 (38.95%), Postives = 105/190 (55.26%), Query Frame = 2
Query:   68 SMASFFKFFLTLALLVLAMGSSTNAQLSTNFYANTCKNLLPTVKSVVQSAISKEARMGASLLRLFFHDCFVNGCDGSVLLDNTSSFTGEKNANANRNSARGFEVIDNIKSAVEKA--CPGVVSCADILAITARDSVVILGGPSWQVKLGRRDARTASLSAANSGIPAPTSNLNQLISRFNALGLSNRTLL 631
            S   F  FFL L L      S  +AQL T FY N+C N+   V++ V+    +      + LRLFFHDCFV GCD S+++ + S      + +    +  GF+ +   K AV+    C   VSCADILA+  R+ VV+ GGPS+ V+LGRRD R ++ ++  S +P P  NLNQL   F+  GLS   ++
Sbjct:    6 SQTIFSNFFLLLLL-----SSCVSAQLRTGFYQNSCPNVETIVRNAVRQKFQQTFVTAPATLRLFFHDCFVRGCDASIMIASPSERDHPDDMSL---AGDGFDTVVKAKQAVDSNPNCRNKVSCADILALATREVVVLTGGPSYPVELGRRDGRISTKASVQSQLPQPEFNLNQLNGMFSRHGLSQTDMI 187          

HSP 2 Score: 28.8758 bits (63), Expect = 1.039e-31
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = 1
Query:  616 QQDLVALAGGHTIGQARC 669
            Q D++AL+G HTIG A C
Sbjct:  183 QTDMIALSGAHTIGFAHC 200          
BLAST of FC921479 vs. ExPASy Swiss-Prot
Match: PERN1_TOBAC (Peroxidase N1 OS=Nicotiana tabacum GN=poxN1 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.352e-31
Identity = 73/192 (38.02%), Postives = 111/192 (57.81%), Query Frame = 2
Query:   59 SYQSMASFFKFFLTLALLVLAMGSSTNAQLSTNFYANTCKNLLPTVKSVVQSAISKEARMGASLLRLFFHDCFVNGCDGSVLLDNTSSFTGEKNANANRNSARGFEVIDNIKSAVEKACPGVVSCADILAITARDSVVILGGPSWQVKLGRRDARTASLSAANSG-IPAPTSNLNQLISRFNALGLSNRTLL 631
            S   MA F    +    + + +G  T       FY++TC      V+S V++    +  +   +LR+ FHDCFV GCDGS+L++ + +   E+ A  NRN  +GF+VI++ K+ +E  CPGVVSCADILA+ ARDSVV   G +W V  GRRD R +   AA++G +PA   +++    +F   GL+ + L+
Sbjct:    7 SINKMAMFMVILVLAIDVTMVLGQGTRV----GFYSSTCPRAESIVQSTVRAHFQSDPTVAPGILRMHFHDCFVLGCDGSILIEGSDA---ERTAIPNRN-LKGFDVIEDAKTQIEAICPGVVSCADILALAARDSVVATRGLTWSVPTGRRDGRVS--RAADAGDLPAFFDSVDIQKRKFLTKGLNTQDLV 188          

HSP 2 Score: 31.187 bits (69), Expect = 1.352e-31
Identity = 14/21 (66.67%), Postives = 14/21 (66.67%), Query Frame = 1
Query:  619 QDLVALAGGHTIGQARCTSFR 681
            QDLVAL G HTIG A C   R
Sbjct:  185 QDLVALTGAHTIGTAGCAVIR 205          
BLAST of FC921479 vs. ExPASy Swiss-Prot
Match: PER13_ARATH (Peroxidase 13 OS=Arabidopsis thaliana GN=PER13 PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.441e-31
Identity = 84/199 (42.21%), Postives = 115/199 (57.79%), Query Frame = 2
Query:   92 FLTLALLVLAMGSSTNAQLSTNFYANTCKNLLPTVKSVVQSAISKEARMGASLLRLFFHDCFVNGCDGSVLLDNTSSFTGEKNANANRNSARGFEVIDNIKSAVEKACPGVVSCADILAITARDSVVILGGPSWQVKLGRRDARTASLSAANSGIPAPTSNLNQLISRFNALGLSNRTLLL*QVDIQSDRRGAHHSGLT 688
            FL L      +G S  AQL   FY+ TC +    V+ VVQ A++ +    A LLRL FHDCFV GCDGS+L+ +  +   E+ A  N   A GF+VID  KS +E+ CPGVVSCADI+A+ ARD++    GP ++V  GRRD   A++  A + +P    ++N L S+F   GLS++ L+L          GAH  G T
Sbjct:    7 FLVLLYFHDQLGYSA-AQLQFGFYSETCPSAESIVRDVVQQAVTNDPGKAAVLLRLQFHDCFVEGCDGSILIKHGGN-DDERFAAGNAGVA-GFDVIDEAKSELERFCPGVVSCADIVALAARDAIAEAKGPFYEVPTGRRDGLIANVDHAKN-LPDVQDSINTLKSKFREKGLSDQDLVLLSA-------GAHTIGTT 194          
BLAST of FC921479 vs. ExPASy Swiss-Prot
Match: PER57_ARATH (Peroxidase 57 OS=Arabidopsis thaliana GN=PER57 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.069e-31
Identity = 66/159 (41.51%), Postives = 98/159 (61.64%), Query Frame = 2
Query:  140 AQLSTNFYANTCKNLLPTVKSVVQSAISKEARMGASLLRLFFHDCFVNGCDGSVLLDNTSSFTGEKNANANRNSARGFEVIDNIKSAVEKACPGVVSCADILAITARDSVVILGGPSWQVKLGRRDARTASLSAANSGIPAPTSNLNQLISRFNALGLS 616
            AQL   FY+ +C      V+++V+        + A+LLR+ FHDCFV GCD S+L+D+T+S   EK A  N  S R F++ID IK+ +E ACP  VSCADI+ +  RDSV + GGPS+ +  GRRD R +  +  +  +P PT +++  +S F   G++
Sbjct:   22 AQLRVGFYSQSCPQAETIVRNLVRQRFGVTPTVTAALLRMHFHDCFVKGCDASLLIDSTNS---EKTAGPN-GSVREFDLIDRIKAQLEAACPSTVSCADIVTLATRDSVALAGGPSYSIPTGRRDGRVS--NNLDVTLPGPTISVSGAVSLFTNKGMN 174          

HSP 2 Score: 27.7202 bits (60), Expect = 5.069e-31
Identity = 11/19 (57.89%), Postives = 12/19 (63.16%), Query Frame = 1
Query:  622 DLVALAGGHTIGQARCTSF 678
            D VAL G HT+GQ  C  F
Sbjct:  177 DAVALLGAHTVGQGNCGLF 195          
BLAST of FC921479 vs. ExPASy Swiss-Prot
Match: PER1_SORBI (Cationic peroxidase SPC4 (Fragment) OS=Sorghum bicolor PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.913e-30
Identity = 72/165 (43.64%), Postives = 102/165 (61.82%), Query Frame = 2
Query:  146 LSTNFYANTCKNLLPTVKSVVQSAISKEARMGASLLRLFFHDCFVNGCDGSVLLDNTSSFTGEKNANANRN-SARGFEVIDNIKSAVEKACPG-VVSCADILAITARDSVVILGGPSWQVKLGRRD-ARTASLSAANSGIPAPTSNLNQLISRFNALGLSNRTLL 631
            LS +FY  +C      V+S VQ A+ ++  + A LLRL FHDCFV GCD SVLLD +++  GE+ A  N       F+ I++I   + K C G VVSC+D+LA+ ARDSVV+ GGPS++V LGRRD A  A+     SG+P PT+ +  L++  + + L    L+
Sbjct:   41 LSFDFYKRSCPKAESIVRSFVQDAVRRDVGLAAGLLRLHFHDCFVQGCDASVLLDGSATGPGEQQAPPNLTLRPTAFKAINDIHDRLHKECGGTVVSCSDVLALAARDSVVVSGGPSYKVPLGRRDSASFATQQDVLSGLPPPTAAVPALLAVLSKINLDATDLV 205          

HSP 2 Score: 24.6386 bits (52), Expect = 1.913e-30
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = 1
Query:  622 DLVALAGGHTI 654
            DLVAL+GGHTI
Sbjct:  203 DLVALSGGHTI 213          
BLAST of FC921479 vs. ExPASy Swiss-Prot
Match: PER48_ARATH (Putative Peroxidase 48 OS=Arabidopsis thaliana GN=PER48 PE=2 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 2.699e-30
Identity = 66/181 (36.46%), Postives = 104/181 (57.46%), Query Frame = 2
Query:  146 LSTNFYANTCKNLLPTVKSVVQSAISKEARMGASLLRLFFHDCFVNGCDGSVLLDNTSSFTGEKNANANRNSARGFEVIDNIKSAVEKACPGVVSCADILAITARDSVVILGGPSWQVKLGRRDARTASLSAANSGIPAPTSNLNQLISRFNALGLSNRTLLL*QVDIQSDRRGAHHSGLT 688
            L  ++Y  +C      +   ++   +    +   ++RL FHDCF+ GCD SVLLD   + T EK+A+ N  S +GF+VID +KS +E  CPGVVSCAD+L + AR++V++ GGP + ++ GR+D+  A    A   +PAP + L+ ++ RF+  G + R  +           GAH  G+T
Sbjct:   68 LHYDYYRESCPTAEKIIAKAIRDIYNVTPSVAPPIIRLLFHDCFIEGCDASVLLDADEAHTSEKDASPNL-SLKGFDVIDAVKSELENVCPGVVSCADLLVLAAREAVLVAGGPFYPLETGRKDSAAAYRDFAEHELPAPDATLSVILQRFSFRGFNERETV--------SLFGAHSIGIT 239          
The following BLAST results are available for this feature:
BLAST of FC921479 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
PER18_ARATH1.975e-3340.44Peroxidase 18 OS=Arabidopsis thaliana GN=PER18 PE=... [more]
PER73_ARATH2.773e-3242.11Peroxidase 73 OS=Arabidopsis thaliana GN=PER73 PE=... [more]
PER51_ARATH2.773e-3241.53Peroxidase 51 OS=Arabidopsis thaliana GN=PER51 PE=... [more]
PER12_ARATH7.965e-3237.76Peroxidase 12 OS=Arabidopsis thaliana GN=PER12 PE=... [more]
PER45_ARATH1.039e-3138.95Peroxidase 45 OS=Arabidopsis thaliana GN=PER45 PE=... [more]
PERN1_TOBAC1.352e-3138.02Peroxidase N1 OS=Nicotiana tabacum GN=poxN1 PE=1 S... [more]
PER13_ARATH2.441e-3142.21Peroxidase 13 OS=Arabidopsis thaliana GN=PER13 PE=... [more]
PER57_ARATH5.069e-3141.51Peroxidase 57 OS=Arabidopsis thaliana GN=PER57 PE=... [more]
PER1_SORBI1.913e-3043.64Cationic peroxidase SPC4 (Fragment) OS=Sorghum bic... [more]
PER48_ARATH2.699e-3036.46Putative Peroxidase 48 OS=Arabidopsis thaliana GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32105D10EF RVDevelopN Citrus clementina cDNA clone C32105D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921479 ID=FC921479; Name=FC921479; organism=Citrus clementina; type=EST; length=689bp
GAACCAAATCAACTTCAAATTCTACAGTACTACTACTGTATTCTATTGAT
GATTAGCTAGCTATCAATCAATGGCTTCGTTTTTCAAGTTCTTTCTGACT
TTGGCACTCCTTGTGCTTGCCATGGGGAGCAGCACAAACGCTCAACTCTC
TACAAATTTCTACGCAAACACTTGCAAAAACCTCCTCCCCACTGTGAAAT
CTGTCGTGCAATCTGCTATTTCAAAAGAGGCTCGCATGGGCGCCTCTCTC
CTTCGCTTGTTCTTCCACGATTGCTTCGTTAACGGATGCGATGGATCAGT
TCTACTGGACAACACATCATCTTTCACTGGAGAGAAAAATGCGAATGCCA
ATCGTAACTCCGCCCGCGGATTCGAGGTCATCGACAACATTAAGTCCGCA
GTTGAGAAAGCTTGCCCCGGTGTGGTCTCTTGTGCTGATATATTAGCCAT
TACTGCTCGAGACTCAGTTGTTATACTTGGAGGCCCAAGCTGGCAAGTAA
AACTCGGAAGGAGAGATGCTAGAACTGCAAGCCTATCTGCTGCTAATAGC
GGCATTCCAGCTCCTACCTCAAACTTGAATCAACTCATCTCTAGGTTCAA
CGCTCTCGGACTTTCCAACAGGACCTTGTTGCTTTAGCAGGTGGACATAC
AATCGGACAGGCGAGGTGCACATCATTCAGGNCTCACAT
back to top