FC921481

Overview
NameFC921481
Unique NameFC921481
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10307 contig Ccv1_Contig10307:58..799. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_HUMAN (Triosephosphate isomerase OS=Homo sapiens GN=TPI1 PE=1 SV=2)

HSP 1 Score: 193.741 bits (491), Expect = 8.625e-49
Identity = 97/171 (56.73%), Postives = 115/171 (67.25%), Query Frame = 1
Query:  229 MASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPXWDNVVIAYEPVWAI 741
            MA S KFFVGGNWK NG K+S+ +L+  LN AK+             YID  +  L  +I +AAQN +    GAFTGEIS   +KD G  WVVLGHSERRHV GE D+ IG+K A+AL+EGLGVIACIGE+L EREAG T  V F+Q K  AD +  W  VV+AYEPVWAI
Sbjct:    1 MAPSRKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAI 171          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_BOVIN (Triosephosphate isomerase OS=Bos taurus GN=TPI1 PE=2 SV=3)

HSP 1 Score: 193.356 bits (490), Expect = 1.126e-48
Identity = 96/171 (56.14%), Postives = 116/171 (67.84%), Query Frame = 1
Query:  229 MASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPXWDNVVIAYEPVWAI 741
            MA S KFFVGGNWK NG K ++ +L++ LN AK+             YID  +  L  +I +AAQN +    GAFTGEIS   +KD+G  WVVLGHSERRHV GE D+ IG+K A+AL+EGLGVIACIGE+L EREAG T  V F+Q K  AD +  W  VV+AYEPVWAI
Sbjct:    1 MAPSRKFFVGGNWKMNGRKNNLGELINTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKIAVAAQNCYKVANGAFTGEISPGMIKDLGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAI 171          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_MACMU (Triosephosphate isomerase OS=Macaca mulatta GN=TPI1 PE=3 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 1.921e-48
Identity = 96/171 (56.14%), Postives = 115/171 (67.25%), Query Frame = 1
Query:  229 MASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPXWDNVVIAYEPVWAI 741
            MA S KFFVGGNWK NG K+++ +L+  LN AK+             YID  +  L  +I +AAQN +    GAFTGEIS   +KD G  WVVLGHSERRHV GE D+ IG+K A+AL+EGLGVIACIGE+L EREAG T  V F+Q K  AD +  W  VV+AYEPVWAI
Sbjct:    1 MAPSRKFFVGGNWKMNGRKQNLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAI 171          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_MACFA (Triosephosphate isomerase OS=Macaca fascicularis GN=TPI1 PE=2 SV=3)

HSP 1 Score: 192.586 bits (488), Expect = 1.921e-48
Identity = 96/171 (56.14%), Postives = 115/171 (67.25%), Query Frame = 1
Query:  229 MASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPXWDNVVIAYEPVWAI 741
            MA S KFFVGGNWK NG K+++ +L+  LN AK+             YID  +  L  +I +AAQN +    GAFTGEIS   +KD G  WVVLGHSERRHV GE D+ IG+K A+AL+EGLGVIACIGE+L EREAG T  V F+Q K  AD +  W  VV+AYEPVWAI
Sbjct:    1 MAPSRKFFVGGNWKMNGRKQNLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAI 171          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_CHICK (Triosephosphate isomerase OS=Gallus gallus GN=TPI1 PE=1 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 1.921e-48
Identity = 95/166 (57.23%), Postives = 115/166 (69.28%), Query Frame = 1
Query:  244 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPXWDNVVIAYEPVWAI 741
            KFFVGGNWK NG K+S+ +L+  LN AKL            +Y+D  +  L  +I +AAQN +    GAFTGEIS   +KDIG  WV+LGHSERRHV GE D+ IG+K A+AL+EGLGVIACIGE+L EREAG T  V F+Q KA AD +  W  VV+AYEPVWAI
Sbjct:    5 KFFVGGNWKMNGDKKSLGELIHTLNGAKLSADTEVVCGAPSIYLDFARQKLDAKIGVAAQNCYKVPKGAFTGEISPAMIKDIGAAWVILGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAI 170          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_RAT (Triosephosphate isomerase OS=Rattus norvegicus GN=Tpi1 PE=1 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 2.509e-48
Identity = 97/171 (56.73%), Postives = 115/171 (67.25%), Query Frame = 1
Query:  229 MASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPXWDNVVIAYEPVWAI 741
            MA S KFFVGGNWK NG K+ + +L+  LN AKL             YID  +  L  +I +AAQN +    GAFTGEIS   +KD+G  WVVLGHSERRH+ GE D+ IG+K  +ALSEGLGVIACIGE+L EREAG T  V F+Q KA AD +  W  VV+AYEPVWAI
Sbjct:    1 MAPSRKFFVGGNWKMNGRKKCLGELICTLNAAKLPADTEVVCAPPTAYIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDLGATWVVLGHSERRHIFGESDELIGQKVNHALSEGLGVIACIGEKLDEREAGITEKVVFEQTKAIADNVKDWCKVVLAYEPVWAI 171          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_PIG (Triosephosphate isomerase OS=Sus scrofa GN=TPI1 PE=2 SV=4)

HSP 1 Score: 192.2 bits (487), Expect = 2.509e-48
Identity = 95/171 (55.56%), Postives = 116/171 (67.84%), Query Frame = 1
Query:  229 MASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPXWDNVVIAYEPVWAI 741
            MA + KFFVGGNWK NG K ++ +L++ LN AKL             YID  +  L  +I +AAQN +    GAFTGEI    +KD+G  WVVLGHSERRHV GE D+ IG+K A+AL+EGLGVIACIGE+L EREAG T  V F+Q K  AD +  W+ VV+AYEPVWAI
Sbjct:    1 MAPARKFFVGGNWKMNGRKNNLGELINTLNAAKLPADTEVVCAPPTAYIDFARQKLDPKIAVAAQNCYKVANGAFTGEIGPGMIKDLGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWNKVVLAYEPVWAI 171          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_GORGO (Triosephosphate isomerase OS=Gorilla gorilla gorilla GN=TPI1 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.509e-48
Identity = 96/171 (56.14%), Postives = 114/171 (66.67%), Query Frame = 1
Query:  229 MASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPXWDNVVIAYEPVWAI 741
            MA S KFFVGGNWK NG K+S+ +L+  LN AK+             YID  +  L  +I +AAQN +    GAFTGEIS   +KD G  WVVLGHSERRHV GE D+ IG+K A+AL+EGLGVIACIGE+L EREAG T  V F+Q K   D +  W  VV+AYEPVWAI
Sbjct:    1 MAPSRKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTKVVCAPPTAYIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVITDNVKDWSKVVLAYEPVWAI 171          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_COPJA (Triosephosphate isomerase, cytosolic OS=Coptis japonica PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.509e-48
Identity = 91/168 (54.17%), Postives = 118/168 (70.24%), Query Frame = 1
Query:  244 KFFVGGNWKCNGTKESITKLVSDLNDAKL--EXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPXWDNVVIAYEPVWAI 741
            KFFVGGNWKCNGT E + K+V+ LN+A++  E          +V++  VKN L     +AAQN WV KGGAFTGE+S E L ++G  WV+LGHSERR ++ E ++F+G K AYALS+GL VIAC+GE L++REAG T  V   Q KA A+ +  W N+V+AYEPVWAI
Sbjct:    4 KFFVGGNWKCNGTSEEVKKIVTLLNEAEVPSEDVVEVVVSPPYVFLPFVKNLLRADFHVAAQNCWVKKGGAFTGEVSAEMLVNLGIPWVILGHSERRALLNESNEFVGDKTAYALSQGLKVIACVGETLEQREAGSTISVVAAQTKAIAEKVSDWTNIVVAYEPVWAI 171          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_CANFA (Triosephosphate isomerase OS=Canis familiaris GN=TPI1 PE=1 SV=3)

HSP 1 Score: 192.2 bits (487), Expect = 2.509e-48
Identity = 96/171 (56.14%), Postives = 116/171 (67.84%), Query Frame = 1
Query:  229 MASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPXWDNVVIAYEPVWAI 741
            MA S KFFVGGNWK NG K+++ +L++ LN AK+             YID  +  L  +I +AAQN +    GAFTGEIS   +KD G  WVVLGHSERRHV GE D+ IG+K A+AL+EGLGVIACIGE+L EREAG T  V F+Q K  AD +  W  VV+AYEPVWAI
Sbjct:    1 MAPSRKFFVGGNWKMNGRKKNLGELITTLNAAKVPADTEVVCAPPTAYIDFARQKLDAKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAI 171          
The following BLAST results are available for this feature:
BLAST of FC921481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_HUMAN8.625e-4956.73Triosephosphate isomerase OS=Homo sapiens GN=TPI1 ... [more]
TPIS_BOVIN1.126e-4856.14Triosephosphate isomerase OS=Bos taurus GN=TPI1 PE... [more]
TPIS_MACMU1.921e-4856.14Triosephosphate isomerase OS=Macaca mulatta GN=TPI... [more]
TPIS_MACFA1.921e-4856.14Triosephosphate isomerase OS=Macaca fascicularis G... [more]
TPIS_CHICK1.921e-4857.23Triosephosphate isomerase OS=Gallus gallus GN=TPI1... [more]
TPIS_RAT2.509e-4856.73Triosephosphate isomerase OS=Rattus norvegicus GN=... [more]
TPIS_PIG2.509e-4855.56Triosephosphate isomerase OS=Sus scrofa GN=TPI1 PE... [more]
TPIS_GORGO2.509e-4856.14Triosephosphate isomerase OS=Gorilla gorilla goril... [more]
TPIS_COPJA2.509e-4854.17Triosephosphate isomerase, cytosolic OS=Coptis jap... [more]
TPIS_CANFA2.509e-4856.14Triosephosphate isomerase OS=Canis familiaris GN=T... [more]

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Properties
Property NameValue
Genbank descriptionC32105D12EF RVDevelopN Citrus clementina cDNA clone C32105D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921481 ID=FC921481; Name=FC921481; organism=Citrus clementina; type=EST; length=742bp
GACATACACAAAGGCTGAGCAAGAGCAAGAGCAAGAGCCAAAGCAGCTGA
GATTATAATTTGACTTTCACTTTGACTTTTCACAATGGCGTCAATGGTCT
CCACAAACTGCGCTCAATTCTCCGGCCTGCGCCGCTCATCGCCCACACAG
TCTTTTTCACAGCACGTCAACTCTCACCTCCGCCTCTTCTCTTCTCGTAG
ACCTCGCCGCGGCAGCAGCGTTGTCGCCATGGCCAGCTCCAACAAGTTCT
TTGTTGGGGGAAACTGGAAGTGTAATGGAACAAAGGAATCTATCACCAAG
CTTGTTTCGGACCTGAACGATGCAAAGTTGGAGGCAGATGTTGATGTTGT
GGTAGCGCCTCCCTTTGTTTACATTGATCAAGTGAAGAATTCATTAACAG
ATAGAATTGAGATAGCAGCTCAGAACTCTTGGGTCGGAAAAGGTGGAGCA
TTTACAGGAGAAATCAGTGTGGAACAACTGAAAGATATTGGCTGCAAGTG
GGTTGTTCTGGGGCATTCTGAGCGCAGACATGTTATTGGTGAAGATGATC
AGTTTATAGGGAAGAAAGCTGCCTATGCCTTGAGCGAGGGACTTGGTGTA
ATAGCTTGTATCGGGGAACAGTTGCAAGAGAGAGAAGCAGGAAAAACTTT
TGATGTCTGTTTTCAGCAACTTAAAGCCTATGCAGATGCTATACCCAGNT
GGGATAATGTAGTCATTGCATATGAGCCTGTATGGGCTATTG
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