FC921481

Overview
NameFC921481
Unique NameFC921481
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_VIBVY (Triosephosphate isomerase OS=Vibrio vulnificus (strain YJ016) GN=tpiA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.583e-26
Identity = 67/170 (39.41%), Postives = 98/170 (57.65%), Query Frame = 1
Query:  253 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXX--FVYIDQVKNSLTD---RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADA--IPXWDNVVIAYEPVWAI 741
            V GNWK NG+K  + +L++ LN A+LE             +YID  +  + +   +I + AQN+ +   GAFTG++S   LKD G   +++GHSERR    E D+F+ KK A+    GL  + CIGE   + EAG+T  VC +Q+ A  DA  +   +  +IAYEP+WAI
Sbjct:    6 VMGNWKLNGSKTMVAELLTGLN-AELEGVEGVDVAVAPPALYIDLAERLIAEGGNKIILGAQNTDINNSGAFTGDMSPAMLKDFGATHIIIGHSERREYHNESDEFVAKKFAFLKENGLKPVFCIGETEAQNEAGETEAVCARQINAVIDAYGVEALNGAIIAYEPIWAI 174          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_VIBVU (Triosephosphate isomerase OS=Vibrio vulnificus GN=tpiA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.583e-26
Identity = 67/170 (39.41%), Postives = 98/170 (57.65%), Query Frame = 1
Query:  253 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXX--FVYIDQVKNSLTD---RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADA--IPXWDNVVIAYEPVWAI 741
            V GNWK NG+K  + +L++ LN A+LE             +YID  +  + +   +I + AQN+ +   GAFTG++S   LKD G   +++GHSERR    E D+F+ KK A+    GL  + CIGE   + EAG+T  VC +Q+ A  DA  +   +  +IAYEP+WAI
Sbjct:    6 VMGNWKLNGSKTMVAELLTGLN-AELEGVEGVDVAVAPPALYIDLAERLIAEGGNKIILGAQNTDINNSGAFTGDMSPAMLKDFGATHIIIGHSERREYHNESDEFVAKKFAFLKENGLKPVFCIGETEAQNEAGETEAVCARQINAVIDAYGVEALNGAIIAYEPIWAI 174          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_PSYIN (Triosephosphate isomerase OS=Psychromonas ingrahamii (strain 37) GN=tpiA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.583e-26
Identity = 71/167 (42.51%), Postives = 93/167 (55.69%), Query Frame = 1
Query:  253 VGGNWKCNGTKESITKLVSDLNDAK-LEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYAD--AIPXWDNVVIAYEPVWAI 741
            V GNWK NGTKES++ L+  +  A               ++I+QV N + +  IE+ AQ+      GAFTGE S   +K+ G K+ ++GHSERR    E D  +  K     + GL  + CIGE L+ERE  KTF+V   QLKA  D   I   +N VIAYEPVWAI
Sbjct:    6 VMGNWKLNGTKESVSALIKGIEAAADAAKNVEVAVCPPTIFIEQVANLVANNSIELGAQDVSTNISGAFTGETSPVMVKEFGAKYSLVGHSERRQYHNETDAVVAAKFVAIQANGLVPVLCIGETLEERETDKTFNVVETQLKAVIDVSGIDALENAVIAYEPVWAI 172          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_LEGPH (Triosephosphate isomerase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=tpiA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.583e-26
Identity = 66/166 (39.76%), Postives = 96/166 (57.83%), Query Frame = 1
Query:  253 VGGNWKCNGTKESITKLVSDLNDA-KLEXXXXXXXXXXFVYIDQVKNSL-TDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY-ADAIPXWDNVVIAYEPVWAI 741
            V GNWK NG  + +T+LVS + +    +           +YI +V++ L T +I + AQN +    GA+TGE+S   LKD  C++V++GHSERR    ED+ F+ +K  +    G+  + C+GE L ERE GKT  V  QQ+ A  A     + + V+AYEPVWAI
Sbjct:    6 VAGNWKMNGQIQQVTELVSQIEELIGFDCAAQVAVMPPSIYIPKVRDCLRTGKIVVGAQNVYPKDYGAYTGELSAPMLKDFDCRYVLVGHSERRQFFHEDENFVAQKFHHVKDHGMIPVLCVGETLSERENGKTEQVIAQQVLAVSAKGKDCFRDCVVAYEPVWAI 171          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_LEGPA (Triosephosphate isomerase OS=Legionella pneumophila (strain Paris) GN=tpiA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.583e-26
Identity = 66/166 (39.76%), Postives = 96/166 (57.83%), Query Frame = 1
Query:  253 VGGNWKCNGTKESITKLVSDLNDA-KLEXXXXXXXXXXFVYIDQVKNSL-TDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY-ADAIPXWDNVVIAYEPVWAI 741
            V GNWK NG  + +T+LVS + +    +           +YI +V++ L T ++ + AQN +    GA+TGE+S   LKD  C++V++GHSERR    ED+ F+ +K  +    G+  I C+GE L ERE GKT  V  QQ+ A  A     + + V+AYEPVWAI
Sbjct:    6 VAGNWKMNGQIQQVTELVSQIEELIGFDCAAQVAVMPPSIYIPKVRDCLKTGKVVVGAQNVYPKDYGAYTGELSAPMLKDFDCRYVLVGHSERRQFFHEDENFVAQKFHHVKDHGMIPILCVGETLSERENGKTEQVIAQQVLAVSAKGKDCFRDCVVAYEPVWAI 171          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_HAES2 (Triosephosphate isomerase OS=Haemophilus somnus (strain 2336) GN=tpiA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.583e-26
Identity = 72/170 (42.35%), Postives = 94/170 (55.29%), Query Frame = 1
Query:  253 VGGNWKCNG----TKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYAD--AIPXWDNVVIAYEPVWAI 741
            V GNWK NG    TKE IT L  +LN                +Y+ + + +L    I +  QN  + K GAFTG+IS E LKD G K+V++GHSERR    E D+FI KK       GL  + CIGE   E EAGKT +VC +Q+ A  +   +  ++  VIAYEP+WAI
Sbjct:    7 VMGNWKLNGSKAFTKELITGLKDELNAVS---GCDVAIAPPVMYLAEAEAALVSSDIALGTQNVDLNKQGAFTGDISTEMLKDFGVKYVIIGHSERRQYHHESDEFIAKKFGVLKDAGLVPVLCIGESEAENEAGKTEEVCARQIDAVMNTLGVEAFNGAVIAYEPIWAI 173          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_YERPY (Triosephosphate isomerase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=tpiA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.067e-26
Identity = 68/167 (40.72%), Postives = 93/167 (55.69%), Query Frame = 1
Query:  253 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYAD--AIPXWDNVVIAYEPVWAI 741
            V GNWK NG+   + +L++ L  +               +Y++Q K+ L   RI + AQN  V   GAFTGE S E LKDIG +++++GHSERR    E D+ I KK       GL  + CIGE   E EAG+T  VC +QL A  +   +  ++  VIAYEP+WAI
Sbjct:    6 VMGNWKLNGSTHMVNELIAGLRKELSTVDGCGVAIAPPAIYLNQAKHELAGSRIALGAQNVDVNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHQESDELIAKKFGVLKEIGLIPVLCIGESEAENEAGQTEAVCAKQLDAVLNTLGVKAFEGAVIAYEPIWAI 172          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_YERPS (Triosephosphate isomerase OS=Yersinia pseudotuberculosis GN=tpiA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.067e-26
Identity = 68/167 (40.72%), Postives = 93/167 (55.69%), Query Frame = 1
Query:  253 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYAD--AIPXWDNVVIAYEPVWAI 741
            V GNWK NG+   + +L++ L  +               +Y++Q K+ L   RI + AQN  V   GAFTGE S E LKDIG +++++GHSERR    E D+ I KK       GL  + CIGE   E EAG+T  VC +QL A  +   +  ++  VIAYEP+WAI
Sbjct:    6 VMGNWKLNGSTHMVNELIAGLRKELSTVDGCGVAIAPPAIYLNQAKHELAGSRIALGAQNVDVNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHQESDELIAKKFGVLKEIGLIPVLCIGESEAENEAGQTEAVCAKQLDAVLNTLGVKAFEGAVIAYEPIWAI 172          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_YERPP (Triosephosphate isomerase OS=Yersinia pestis (strain Pestoides F) GN=tpiA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.067e-26
Identity = 68/167 (40.72%), Postives = 93/167 (55.69%), Query Frame = 1
Query:  253 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYAD--AIPXWDNVVIAYEPVWAI 741
            V GNWK NG+   + +L++ L  +               +Y++Q K+ L   RI + AQN  V   GAFTGE S E LKDIG +++++GHSERR    E D+ I KK       GL  + CIGE   E EAG+T  VC +QL A  +   +  ++  VIAYEP+WAI
Sbjct:    6 VMGNWKLNGSTHMVNELIAGLRKELSTVDGCGVAIAPPAIYLNQAKHELAGSRIALGAQNVDVNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHQESDELIAKKFGVLKEIGLIPVLCIGESEAENEAGQTEAVCAKQLDAVLNTLGVKAFEGAVIAYEPIWAI 172          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_YERPN (Triosephosphate isomerase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=tpiA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.067e-26
Identity = 68/167 (40.72%), Postives = 93/167 (55.69%), Query Frame = 1
Query:  253 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYAD--AIPXWDNVVIAYEPVWAI 741
            V GNWK NG+   + +L++ L  +               +Y++Q K+ L   RI + AQN  V   GAFTGE S E LKDIG +++++GHSERR    E D+ I KK       GL  + CIGE   E EAG+T  VC +QL A  +   +  ++  VIAYEP+WAI
Sbjct:    6 VMGNWKLNGSTHMVNELIAGLRKELSTVDGCGVAIAPPAIYLNQAKHELAGSRIALGAQNVDVNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHQESDELIAKKFGVLKEIGLIPVLCIGESEAENEAGQTEAVCAKQLDAVLNTLGVKAFEGAVIAYEPIWAI 172          
The following BLAST results are available for this feature:
BLAST of FC921481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_VIBVY1.583e-2639.41Triosephosphate isomerase OS=Vibrio vulnificus (st... [more]
TPIS_VIBVU1.583e-2639.41Triosephosphate isomerase OS=Vibrio vulnificus GN=... [more]
TPIS_PSYIN1.583e-2642.51Triosephosphate isomerase OS=Psychromonas ingraham... [more]
TPIS_LEGPH1.583e-2639.76Triosephosphate isomerase OS=Legionella pneumophil... [more]
TPIS_LEGPA1.583e-2639.76Triosephosphate isomerase OS=Legionella pneumophil... [more]
TPIS_HAES21.583e-2642.35Triosephosphate isomerase OS=Haemophilus somnus (s... [more]
TPIS_YERPY2.067e-2640.72Triosephosphate isomerase OS=Yersinia pseudotuberc... [more]
TPIS_YERPS2.067e-2640.72Triosephosphate isomerase OS=Yersinia pseudotuberc... [more]
TPIS_YERPP2.067e-2640.72Triosephosphate isomerase OS=Yersinia pestis (stra... [more]
TPIS_YERPN2.067e-2640.72Triosephosphate isomerase OS=Yersinia pestis bv. A... [more]

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Properties
Property NameValue
Genbank descriptionC32105D12EF RVDevelopN Citrus clementina cDNA clone C32105D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921481 ID=FC921481; Name=FC921481; organism=Citrus clementina; type=EST; length=742bp
GACATACACAAAGGCTGAGCAAGAGCAAGAGCAAGAGCCAAAGCAGCTGA
GATTATAATTTGACTTTCACTTTGACTTTTCACAATGGCGTCAATGGTCT
CCACAAACTGCGCTCAATTCTCCGGCCTGCGCCGCTCATCGCCCACACAG
TCTTTTTCACAGCACGTCAACTCTCACCTCCGCCTCTTCTCTTCTCGTAG
ACCTCGCCGCGGCAGCAGCGTTGTCGCCATGGCCAGCTCCAACAAGTTCT
TTGTTGGGGGAAACTGGAAGTGTAATGGAACAAAGGAATCTATCACCAAG
CTTGTTTCGGACCTGAACGATGCAAAGTTGGAGGCAGATGTTGATGTTGT
GGTAGCGCCTCCCTTTGTTTACATTGATCAAGTGAAGAATTCATTAACAG
ATAGAATTGAGATAGCAGCTCAGAACTCTTGGGTCGGAAAAGGTGGAGCA
TTTACAGGAGAAATCAGTGTGGAACAACTGAAAGATATTGGCTGCAAGTG
GGTTGTTCTGGGGCATTCTGAGCGCAGACATGTTATTGGTGAAGATGATC
AGTTTATAGGGAAGAAAGCTGCCTATGCCTTGAGCGAGGGACTTGGTGTA
ATAGCTTGTATCGGGGAACAGTTGCAAGAGAGAGAAGCAGGAAAAACTTT
TGATGTCTGTTTTCAGCAACTTAAAGCCTATGCAGATGCTATACCCAGNT
GGGATAATGTAGTCATTGCATATGAGCCTGTATGGGCTATTG
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