FC921481

Overview
NameFC921481
Unique NameFC921481
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_SALPB (Triosephosphate isomerase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=tpiA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.526e-26
Identity = 69/167 (41.32%), Postives = 93/167 (55.69%), Query Frame = 1 
Query:  253 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPXWDNVVIAYEPVWAI 741
            V GNWK NG++  + +LV++L  +               +YID  K +     I + AQN  +   GAFTGE S E LKDIG +++++GHSERR    E D+ I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A         ++  VIAYEPVWAI
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRKELAGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAI 172
[Close]
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_SALPA (Triosephosphate isomerase OS=Salmonella paratyphi A GN=tpiA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.526e-26
Identity = 69/167 (41.32%), Postives = 93/167 (55.69%), Query Frame = 1 
Query:  253 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPXWDNVVIAYEPVWAI 741
            V GNWK NG++  + +LV++L  +               +YID  K +     I + AQN  +   GAFTGE S E LKDIG +++++GHSERR    E D+ I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A         ++  VIAYEPVWAI
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRKELAGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAI 172
[Close]
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_SALNS (Triosephosphate isomerase OS=Salmonella newport (strain SL254) GN=tpiA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.526e-26
Identity = 69/167 (41.32%), Postives = 93/167 (55.69%), Query Frame = 1 
Query:  253 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPXWDNVVIAYEPVWAI 741
            V GNWK NG++  + +LV++L  +               +YID  K +     I + AQN  +   GAFTGE S E LKDIG +++++GHSERR    E D+ I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A         ++  VIAYEPVWAI
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRKELTGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAI 172
[Close]
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_SALHS (Triosephosphate isomerase OS=Salmonella heidelberg (strain SL476) GN=tpiA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.526e-26
Identity = 69/167 (41.32%), Postives = 93/167 (55.69%), Query Frame = 1 
Query:  253 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPXWDNVVIAYEPVWAI 741
            V GNWK NG++  + +LV++L  +               +YID  K +     I + AQN  +   GAFTGE S E LKDIG +++++GHSERR    E D+ I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A         ++  VIAYEPVWAI
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRKELTGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAI 172
[Close]
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_SALG2 (Triosephosphate isomerase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=tpiA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.526e-26
Identity = 69/167 (41.32%), Postives = 93/167 (55.69%), Query Frame = 1 
Query:  253 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPXWDNVVIAYEPVWAI 741
            V GNWK NG++  + +LV++L  +               +YID  K +     I + AQN  +   GAFTGE S E LKDIG +++++GHSERR    E D+ I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A         ++  VIAYEPVWAI
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRKELAGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAI 172
[Close]
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_SALEP (Triosephosphate isomerase OS=Salmonella enteritidis PT4 (strain P125109) GN=tpiA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.526e-26
Identity = 69/167 (41.32%), Postives = 93/167 (55.69%), Query Frame = 1 
Query:  253 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPXWDNVVIAYEPVWAI 741
            V GNWK NG++  + +LV++L  +               +YID  K +     I + AQN  +   GAFTGE S E LKDIG +++++GHSERR    E D+ I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A         ++  VIAYEPVWAI
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRKELAGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAI 172
[Close]
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_SALDC (Triosephosphate isomerase OS=Salmonella dublin (strain CT_02021853) GN=tpiA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.526e-26
Identity = 69/167 (41.32%), Postives = 93/167 (55.69%), Query Frame = 1 
Query:  253 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPXWDNVVIAYEPVWAI 741
            V GNWK NG++  + +LV++L  +               +YID  K +     I + AQN  +   GAFTGE S E LKDIG +++++GHSERR    E D+ I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A         ++  VIAYEPVWAI
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRKELAGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAI 172
[Close]
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_SALCH (Triosephosphate isomerase OS=Salmonella choleraesuis GN=tpiA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.526e-26
Identity = 69/167 (41.32%), Postives = 93/167 (55.69%), Query Frame = 1 
Query:  253 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPXWDNVVIAYEPVWAI 741
            V GNWK NG++  + +LV++L  +               +YID  K +     I + AQN  +   GAFTGE S E LKDIG +++++GHSERR    E D+ I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A         ++  VIAYEPVWAI
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRKELTGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAI 172
[Close]
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_SALA4 (Triosephosphate isomerase OS=Salmonella agona (strain SL483) GN=tpiA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.526e-26
Identity = 69/167 (41.32%), Postives = 93/167 (55.69%), Query Frame = 1 
Query:  253 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPXWDNVVIAYEPVWAI 741
            V GNWK NG++  + +LV++L  +               +YID  K +     I + AQN  +   GAFTGE S E LKDIG +++++GHSERR    E D+ I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A         ++  VIAYEPVWAI
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRKELTGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAI 172
[Close]
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_PSE14 (Triosephosphate isomerase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=tpiA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.526e-26
Identity = 69/167 (41.32%), Postives = 96/167 (57.49%), Query Frame = 1 
Query:  253 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSL-TDRIEIAAQNSWV-GKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYAD--AIPXWDNVVIAYEPVWAI 741
            V GNWK +GT+ S+ +L+  L    L            ++ +QV   L    I + AQ++ +  + GA TGEI+  QL D GCK V++GHSERR +IGE D  + KK A   + GL  + CIGE L+ER+AG+T +V  +QL +      +    N VIAYEPVWAI
Sbjct:    6 VAGNWKMHGTRASVAELIEGLGKQVLPGSVDIAVMPASLFTNQVIEGLRATSIIVGAQDAAIQAEQGALTGEIASSQLADAGCKLVLVGHSERRQLIGEQDDVLNKKFAAIQASGLTPVLCIGETLEERKAGQTLEVVGRQLDSVIAEFGVSALINAVIAYEPVWAI 172
The following BLAST results are available for this feature:
BLAST of FC921481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_SALPB3.526e-2641.32Triosephosphate isomerase OS=Salmonella paratyphi ... [more]
TPIS_SALPA3.526e-2641.32Triosephosphate isomerase OS=Salmonella paratyphi ... [more]
TPIS_SALNS3.526e-2641.32Triosephosphate isomerase OS=Salmonella newport (s... [more]
TPIS_SALHS3.526e-2641.32Triosephosphate isomerase OS=Salmonella heidelberg... [more]
TPIS_SALG23.526e-2641.32Triosephosphate isomerase OS=Salmonella gallinarum... [more]
TPIS_SALEP3.526e-2641.32Triosephosphate isomerase OS=Salmonella enteritidi... [more]
TPIS_SALDC3.526e-2641.32Triosephosphate isomerase OS=Salmonella dublin (st... [more]
TPIS_SALCH3.526e-2641.32Triosephosphate isomerase OS=Salmonella choleraesu... [more]
TPIS_SALA43.526e-2641.32Triosephosphate isomerase OS=Salmonella agona (str... [more]
TPIS_PSE143.526e-2641.32Triosephosphate isomerase OS=Pseudomonas syringae ... [more]

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Properties
Property NameValue
Genbank descriptionC32105D12EF RVDevelopN Citrus clementina cDNA clone C32105D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921481 ID=FC921481; Name=FC921481; organism=Citrus clementina; type=EST; length=742bp
GACATACACAAAGGCTGAGCAAGAGCAAGAGCAAGAGCCAAAGCAGCTGA
GATTATAATTTGACTTTCACTTTGACTTTTCACAATGGCGTCAATGGTCT
CCACAAACTGCGCTCAATTCTCCGGCCTGCGCCGCTCATCGCCCACACAG
TCTTTTTCACAGCACGTCAACTCTCACCTCCGCCTCTTCTCTTCTCGTAG
ACCTCGCCGCGGCAGCAGCGTTGTCGCCATGGCCAGCTCCAACAAGTTCT
TTGTTGGGGGAAACTGGAAGTGTAATGGAACAAAGGAATCTATCACCAAG
CTTGTTTCGGACCTGAACGATGCAAAGTTGGAGGCAGATGTTGATGTTGT
GGTAGCGCCTCCCTTTGTTTACATTGATCAAGTGAAGAATTCATTAACAG
ATAGAATTGAGATAGCAGCTCAGAACTCTTGGGTCGGAAAAGGTGGAGCA
TTTACAGGAGAAATCAGTGTGGAACAACTGAAAGATATTGGCTGCAAGTG
GGTTGTTCTGGGGCATTCTGAGCGCAGACATGTTATTGGTGAAGATGATC
AGTTTATAGGGAAGAAAGCTGCCTATGCCTTGAGCGAGGGACTTGGTGTA
ATAGCTTGTATCGGGGAACAGTTGCAAGAGAGAGAAGCAGGAAAAACTTT
TGATGTCTGTTTTCAGCAACTTAAAGCCTATGCAGATGCTATACCCAGNT
GGGATAATGTAGTCATTGCATATGAGCCTGTATGGGCTATTG
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