FC921481

Overview
NameFC921481
Unique NameFC921481
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10307 contig Ccv1_Contig10307:58..799. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_VESOH (Triosephosphate isomerase OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=tpiA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.295e-28
Identity = 62/166 (37.35%), Postives = 104/166 (62.65%), Query Frame = 1
Query:  253 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSL-TDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYAD--AIPXWDNVVIAYEPVWAI 741
            + GNWK N +KE+   LV D+    ++          F Y+ QV+  +   ++ + AQ+  + K GAFTGE+SV+ +KD G ++V++GHSERR +  E+++ + +K   AL+  L  + CIGE L++R++GKT +V  +Q++A  D   I  + ++++AYEPVWAI
Sbjct:    6 IAGNWKMNASKEATNILVMDILSGMVDVKSKVIICVPFPYMAQVEALVGCSQLNLGAQDLNINKSGAFTGEVSVDMIKDFGARYVIVGHSERRSLYFENNEIVAQKVQVALNNNLTPLLCIGELLEDRDSGKTQEVVSEQIQAVIDLVGIDAFKDIIVAYEPVWAI 171          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_MAGSM (Triosephosphate isomerase OS=Magnetococcus sp. (strain MC-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.295e-28
Identity = 70/170 (41.18%), Postives = 98/170 (57.65%), Query Frame = 1
Query:  253 VGGNWKCNGTKESITKLVSDLND--AKLEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIP----XWDNVVIAYEPVWAI 741
            + GNWK NGT ++ T L + + D  A  +          F  +  V+  +    +++ AQN  V   GAFTGEIS E LKD+GC +V+LGHSERR + GE ++ + +K A A  +GL  I C+GE L++REA +T  V  QQL A    +P        +V+AYEPVWAI
Sbjct:    6 IAGNWKLNGTTQAATALATAVRDGVAANKPDCDVLVCPTFTVLSAVQGVVAGSGVDLGAQNMAVASSGAFTGEISGEMLKDVGCSYVILGHSERRTLFGETNEQVAQKVASAYRDGLTPILCVGETLEQREAEQTMQVLEQQLLACLPVLPADAAKQQQLVVAYEPVWAI 175          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_HAHCH (Triosephosphate isomerase OS=Hahella chejuensis (strain KCTC 2396) GN=tpiA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.295e-28
Identity = 65/167 (38.92%), Postives = 98/167 (58.68%), Query Frame = 1
Query:  244 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPXWDNVVIAYEPVWAI 741
            K  + GNWK NG+ E    L+  + +AK            F Y+  V+++++D  IE+ +QN    + GA+TGE+S +   D+ C WV+LGHSERR +  E+D+ I  K   A+  GL  I C+GE L +RE+G+  +V  +QL A   ++   D+ V+AYEPVWAI
Sbjct:    3 KKLIAGNWKSNGSLERNKALLEGIVNAKALGSVDVVVCPPFPYLQSVESAVSDSMIELGSQNCSATEDGAYTGEVSAKMCADMKCSWVILGHSERRALYAENDEVIACKVKRAVESGLAPILCVGETLADRESGRAEEVTLKQLDAVFMSVQPDDSWVVAYEPVWAI 169          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_PSEPF (Triosephosphate isomerase OS=Pseudomonas fluorescens (strain Pf0-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.691e-28
Identity = 72/167 (43.11%), Postives = 101/167 (60.48%), Query Frame = 1
Query:  253 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWV-GKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYAD--AIPXWDNVVIAYEPVWAI 741
            V GNWK +GT+ S+ +L++ L    L            +YI+QV + L  + I + AQNS V    GA TGEI+  QL D GC  V++GHSERR ++GE D  + +K A A + GL  + C+GE L++REAGKT +V  +QL +  +   +  + N VIAYEPVWAI
Sbjct:    6 VAGNWKMHGTRASVAELINGLRHLALPSGVDVAVFPPCLYINQVIDGLKGKSISVGAQNSAVESMQGALTGEIAPSQLVDAGCSLVLVGHSERRQIMGERDGMLNRKFAAAQACGLIPVLCVGETLEQREAGKTLEVVGRQLGSIIEELGVGAFANAVIAYEPVWAI 172          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_PSEF5 (Triosephosphate isomerase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=tpiA PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.691e-28
Identity = 72/167 (43.11%), Postives = 102/167 (61.08%), Query Frame = 1
Query:  253 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWV-GKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYAD--AIPXWDNVVIAYEPVWAI 741
            V GNWK +GT+ S+ +L++ L    L            +YI+QV + L  + I++ AQNS V    GA TGEI+  QL D GC  V++GHSERR ++GE D  + +K A A + GL  + C+GE L++REAGKT +V  +QL +  +   +  + N VIAYEPVWAI
Sbjct:    6 VAGNWKMHGTRASVAELINGLRHLALPSGVDVAVFPPCLYINQVIDGLKGKSIQVGAQNSAVESMQGALTGEIAPSQLVDAGCSLVLVGHSERRLIMGERDATLNRKFAAAQACGLKPVLCVGETLEQREAGKTLEVVGRQLGSIIEELGVGAFANAVIAYEPVWAI 172          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_THEP3 (Triosephosphate isomerase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=tpiA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.209e-28
Identity = 71/166 (42.77%), Postives = 93/166 (56.02%), Query Frame = 1
Query:  253 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTD-RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPXWD--NVVIAYEPVWAI 741
            + GNWK + T     KLV +L     +          FV + +V   +    I + AQ+ +  + GA+TGEIS   LK+IG K+VV+GHSERR   GE D+ + KK   ALS GL  I C+GE L +RE GKTF+V   Q K     +   D  NVVIAYEP+WAI
Sbjct:    6 IAGNWKMHMTPSEAVKLVEELIPQVKDAKAEVVVIPPFVDLTEVNKVIQGTNILLGAQDMFWEEKGAYTGEISPLMLKEIGVKYVVIGHSERRQYFGETDEMVNKKVLSALSHGLSPIVCVGESLSQREEGKTFEVVLNQTKEALKGVSHDDIVNVVIAYEPIWAI 171          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_RUTMC (Triosephosphate isomerase OS=Ruthia magnifica subsp. Calyptogena magnifica GN=tpiA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.209e-28
Identity = 65/169 (38.46%), Postives = 98/169 (57.99%), Query Frame = 1
Query:  244 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTD-RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYAD--AIPXWDNVVIAYEPVWAI 741
            +  + GNWK N +KE+   LV  +     +           +Y+ QV+  + D ++ + AQN  V K GAFTGEIS + +KD G K+V++GHSERR + GE D+ + +K   AL   L  + CIGE L++RE+  T  V  +Q++   D   I  + N+++AYEPVWAI
Sbjct:    3 QIIIAGNWKMNASKEATNTLVIGILSGMADVKSKVIVCVPSLYMSQVEVLVVDSQLNLGAQNLNVNKLGAFTGEISADMIKDFGAKYVIVGHSERRSLYGETDEIVAQKVQVALDNNLTPLFCIGELLEDRESNNTKSVVSKQIQVVIDRVGIEAFKNIIVAYEPVWAI 171          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_ERWCT (Triosephosphate isomerase OS=Erwinia carotovora subsp. atroseptica GN=tpiA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.767e-28
Identity = 71/167 (42.51%), Postives = 94/167 (56.29%), Query Frame = 1
Query:  253 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAI--PXWDNVVIAYEPVWAI 741
            V GNWK NG+   + +L++ L  +               +Y+DQ  + L   RI + AQN  V   GAFTGE S E LKDIG K++++GHSERR    E D+FI KK       GL  + CIGE   E EAG+T  VC +QL A  + +    ++N V+AYEPVWAI
Sbjct:    6 VMGNWKLNGSTNLVNELIAGLRKELSTVDGCGVAIAPPAIYLDQANHQLAGSRIALGAQNVDVNLSGAFTGETSAEMLKDIGAKYIIIGHSERRTYHKESDEFIAKKFGVLKDAGLIPVLCIGETEAENEAGQTEAVCARQLDAVLNTLGAKAFENTVVAYEPVWAI 172          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_THEPX (Triosephosphate isomerase OS=Thermoanaerobacter sp. (strain X514) GN=tpiA PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.426e-28
Identity = 70/166 (42.17%), Postives = 92/166 (55.42%), Query Frame = 1
Query:  253 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTD-RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPXWD--NVVIAYEPVWAI 741
            + GNWK + T     KLV +L     +          FV + +V   +    I + AQ+ +  + GA+TGEIS   LK+IG K+VV+GHSERR   GE D+ + KK   ALS GL  I C+GE   +RE GKTF+V   Q K     +   D  NVVIAYEP+WAI
Sbjct:    6 IAGNWKMHMTPSEAVKLVDELIPQVKDAKAEVVVIPPFVDLTEVNKVIQGTNILLGAQDMFWEEKGAYTGEISPLMLKEIGVKYVVIGHSERRQYFGETDEMVNKKVLSALSHGLSPIVCVGESFSQREEGKTFEVVLSQTKEALKGVTHDDIVNVVIAYEPIWAI 171          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_PSEAE (Triosephosphate isomerase OS=Pseudomonas aeruginosa GN=tpiA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.393e-28
Identity = 70/167 (41.92%), Postives = 96/167 (57.49%), Query Frame = 1
Query:  253 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWVGK-GGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYAD--AIPXWDNVVIAYEPVWAI 741
            V GNWK +GT  S+ +L+  L    L            ++I QV   L  + I++ AQNS V    GA TGE +  QL D+GC  V++GHSERR ++GE D+ + +K A A S GL  + C+GE   EREAGKT +V  +QL +  D   +  +   V+AYEPVWAI
Sbjct:    6 VAGNWKMHGTHSSVAELIKGLRQLALPSGVDVAVMPPCLFISQVIQGLAGKAIDVGAQNSAVEPMQGALTGETAPSQLADVGCSMVLVGHSERRLILGESDEVVSRKFAAAQSCGLVPVLCVGETRAEREAGKTLEVVARQLGSVIDELGVGAFARAVVAYEPVWAI 172          
The following BLAST results are available for this feature:
BLAST of FC921481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_VESOH1.295e-2837.35Triosephosphate isomerase OS=Vesicomyosocius okuta... [more]
TPIS_MAGSM1.295e-2841.18Triosephosphate isomerase OS=Magnetococcus sp. (st... [more]
TPIS_HAHCH1.295e-2838.92Triosephosphate isomerase OS=Hahella chejuensis (s... [more]
TPIS_PSEPF1.691e-2843.11Triosephosphate isomerase OS=Pseudomonas fluoresce... [more]
TPIS_PSEF51.691e-2843.11Triosephosphate isomerase OS=Pseudomonas fluoresce... [more]
TPIS_THEP32.209e-2842.77Triosephosphate isomerase OS=Thermoanaerobacter ps... [more]
TPIS_RUTMC2.209e-2838.46Triosephosphate isomerase OS=Ruthia magnifica subs... [more]
TPIS_ERWCT3.767e-2842.51Triosephosphate isomerase OS=Erwinia carotovora su... [more]
TPIS_THEPX6.426e-2842.17Triosephosphate isomerase OS=Thermoanaerobacter sp... [more]
TPIS_PSEAE8.393e-2841.92Triosephosphate isomerase OS=Pseudomonas aeruginos... [more]

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Properties
Property NameValue
Genbank descriptionC32105D12EF RVDevelopN Citrus clementina cDNA clone C32105D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921481 ID=FC921481; Name=FC921481; organism=Citrus clementina; type=EST; length=742bp
GACATACACAAAGGCTGAGCAAGAGCAAGAGCAAGAGCCAAAGCAGCTGA
GATTATAATTTGACTTTCACTTTGACTTTTCACAATGGCGTCAATGGTCT
CCACAAACTGCGCTCAATTCTCCGGCCTGCGCCGCTCATCGCCCACACAG
TCTTTTTCACAGCACGTCAACTCTCACCTCCGCCTCTTCTCTTCTCGTAG
ACCTCGCCGCGGCAGCAGCGTTGTCGCCATGGCCAGCTCCAACAAGTTCT
TTGTTGGGGGAAACTGGAAGTGTAATGGAACAAAGGAATCTATCACCAAG
CTTGTTTCGGACCTGAACGATGCAAAGTTGGAGGCAGATGTTGATGTTGT
GGTAGCGCCTCCCTTTGTTTACATTGATCAAGTGAAGAATTCATTAACAG
ATAGAATTGAGATAGCAGCTCAGAACTCTTGGGTCGGAAAAGGTGGAGCA
TTTACAGGAGAAATCAGTGTGGAACAACTGAAAGATATTGGCTGCAAGTG
GGTTGTTCTGGGGCATTCTGAGCGCAGACATGTTATTGGTGAAGATGATC
AGTTTATAGGGAAGAAAGCTGCCTATGCCTTGAGCGAGGGACTTGGTGTA
ATAGCTTGTATCGGGGAACAGTTGCAAGAGAGAGAAGCAGGAAAAACTTT
TGATGTCTGTTTTCAGCAACTTAAAGCCTATGCAGATGCTATACCCAGNT
GGGATAATGTAGTCATTGCATATGAGCCTGTATGGGCTATTG
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