FC921486

Overview
NameFC921486
Unique NameFC921486
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14320 contig Ccv1_Contig14320:1..690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPDE_COFAR (Spermidine synthase OS=Coffea arabica PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.061e-58
Identity = 111/127 (87.40%), Postives = 116/127 (91.34%), Query Frame = 1
Query:  301 PDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            PD +SSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNV VFQSSTYGKVL+LDGVIQLTERDECAYQEMI HLPLCSIP+PKKVLVI      VLREV+RH SVE+IDICEIDKMVVDVSK F
Sbjct:   17 PDGVSSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMIAHLPLCSIPSPKKVLVIGGGDGGVLREVARHLSVEQIDICEIDKMVVDVSKQF 143          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPD1_ORYSJ (Spermidine synthase 1 OS=Oryza sativa subsp. japonica GN=SPDSYN1 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.532e-57
Identity = 109/124 (87.90%), Postives = 115/124 (92.74%), Query Frame = 1
Query:  310 ISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            IS+VIPGWFSEISPMWPGEAHSLKVEK+LFQGKSDYQNV VFQSSTYGKVL+LDGVIQ+TERDECAYQEMITHLPLCSI +PKKVLVI      VLREVSRHSSVE+IDICEIDKMVVDVSK F
Sbjct:   27 ISAVIPGWFSEISPMWPGEAHSLKVEKVLFQGKSDYQNVMVFQSSTYGKVLVLDGVIQVTERDECAYQEMITHLPLCSIKDPKKVLVIGGGDGGVLREVSRHSSVEQIDICEIDKMVVDVSKQF 150          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: PMT1_TOBAC (Putrescine N-methyltransferase 1 OS=Nicotiana tabacum GN=PMT1 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.457e-39
Identity = 82/150 (54.67%), Postives = 101/150 (67.33%), Query Frame = 1
Query:  232 DGEKEANNNNNGSVLMEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            +G +   +      +   + N+      S+ PGWFSE S +WPGEA SLKVEK+LFQGKSDYQ+V +F+S+TYGKVL LDG IQ TE     Y EMI HLPL SIPNPKKVL+I       L E+ R+ S+EKIDI EID +VVDVS+ F
Sbjct:   55 NGHQNGTSEQQNGTISHDNGNELLGSSDSIKPGWFSEFSALWPGEAFSLKVEKLLFQGKSDYQDVMLFESATYGKVLTLDGAIQHTENGGFPYTEMIVHLPLGSIPNPKKVLIIGGGIGFTLFEMLRYPSIEKIDIVEIDDVVVDVSRKF 204          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: PMT3_TOBAC (Putrescine N-methyltransferase 3 OS=Nicotiana tabacum GN=PMT3 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.148e-39
Identity = 83/143 (58.04%), Postives = 104/143 (72.73%), Query Frame = 1
Query:  253 NNNNGSVLMEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            +++NG+ L  + S+      +S+ PGWFSE S +WPGEA SLKVEK+LFQGKSDYQ+V +F+S+TYGKVL LDG IQ TE     Y EMI HLPL SIPNPKKVL+I       L E+ R+ ++EKIDI EID +VVDVS+ F
Sbjct:   74 SHDNGNELQLLGSS------NSIKPGWFSEFSALWPGEAFSLKVEKLLFQGKSDYQDVMLFESATYGKVLTLDGAIQHTENGGFPYTEMIVHLPLGSIPNPKKVLIIGGGIGFTLFEMLRYPTIEKIDIVEIDDVVVDVSRKF 210          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: PMT2_TOBAC (Putrescine N-methyltransferase 2 OS=Nicotiana tabacum GN=PMT2 PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.592e-38
Identity = 86/167 (51.50%), Postives = 109/167 (65.27%), Query Frame = 1
Query:  208 LPLKRPRDDGEKEANNNNNGSV-----LMEMDSNKQ----PDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            +P+    +   K  N + NG+       + +D+  +     +CI    PGWFSE S +WPGEA SLKVEK+LFQGKSDYQ+V +F+S+TYGKVL LDG IQ TE     Y EMI HLPL SIPNPKKVL+I       L E+ R+ ++EKIDI EID +VVDVS+ F
Sbjct:   19 IPMNGHHNGTSKHQNGHKNGTSEQQNGTISLDNGNELLGNSNCIK---PGWFSEFSALWPGEAFSLKVEKLLFQGKSDYQDVMLFESATYGKVLTLDGAIQHTENGGFPYTEMIVHLPLGSIPNPKKVLIIGGGIGFTLFEMLRYPTIEKIDIVEIDDVVVDVSRKF 182          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: PMT4_TOBAC (Putrescine N-methyltransferase 4 OS=Nicotiana tabacum GN=PMT4 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.922e-37
Identity = 79/148 (53.38%), Postives = 100/148 (67.57%), Query Frame = 1
Query:  232 DGEKEANNNNNGSVLMEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSK 675
            +G +   +      +   + N+     +S+  GWFSE S +WPGEA SLKVEK+LFQGKSDYQ+V +F+S+TYGKVL LDG IQ TE     Y EMI HLPL SIPNPKKVL+I       L E+ R+ ++EKIDI EID +VVDVS+
Sbjct:   99 NGHQNGTSEQQNGTISHDNGNELLGNSNSIKLGWFSEFSALWPGEAFSLKVEKLLFQGKSDYQDVMLFESATYGKVLTLDGAIQHTENGGFPYTEMIVHLPLGSIPNPKKVLIIGGGIGFTLFEMLRYPTIEKIDIVEIDDVVVDVSR 246          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_DICDI (Spermidine synthase OS=Dictyostelium discoideum GN=spsA PE=3 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.811e-35
Identity = 70/118 (59.32%), Postives = 90/118 (76.27%), Query Frame = 1
Query:  328 GWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            GWFSEIS  WPG + SL+VEK+L   KS+YQ+  VF+S ++G VL+LDGVIQ TERDE AYQEMITH+PL S P+PK+VLV+      VLREV +H  VE + +CEIDK V++ S++F
Sbjct:    7 GWFSEISEFWPGNSFSLEVEKVLHHEKSEYQDFLVFKSKSFGNVLVLDGVIQATERDEFAYQEMITHIPLFSHPSPKRVLVVGGGDGGVLREVVKHPLVESVTLCEIDKGVIEASRNF 124          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_SCHPO (Spermidine synthase OS=Schizosaccharomyces pombe GN=SPBC12C2.07c PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.794e-35
Identity = 72/118 (61.02%), Postives = 89/118 (75.42%), Query Frame = 1
Query:  328 GWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            GWF EI+ MWPG+A +LKV+K+L+ GKS YQ+V VF+S TYG VL+LDG IQ TERDE +YQEMI HL L S PNPKKVLVI      VLREV +H  VE+  +C+ID+ V+ VSK +
Sbjct:   14 GWFREINNMWPGQAMTLKVKKVLYAGKSKYQDVLVFESETYGHVLVLDGAIQATERDEFSYQEMIAHLALNSHPNPKKVLVIGGGDGGVLREVVKHECVEEAILCDIDEDVIKVSKQY 131          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_MOUSE (Spermidine synthase OS=Mus musculus GN=Srm PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.395e-34
Identity = 70/123 (56.91%), Postives = 92/123 (74.80%), Query Frame = 1
Query:  313 SSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            +++  GWF E   +WPG+A SL+VE++L   +S YQ++ VF+S TYG VL+LDGVIQ TERDE +YQEMI +LPLCS PNP+KVL+I      VLREV +H SVE +  CEID+ V++VSK F
Sbjct:   14 AAIREGWFRETCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIEVSKKF 136          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_YEAST (Spermidine synthase OS=Saccharomyces cerevisiae GN=SPE3 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.379e-34
Identity = 73/123 (59.35%), Postives = 92/123 (74.80%), Query Frame = 1
Query:  316 SVIPGWFSEISP-MWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            +++ GWF EIS  MWPG+A +LKVEK+L   KS YQ+V +F+S+TYG VL+LD VIQ TERDE AYQEMI HL L S PNPKKVLVI      VLREV +H SVE+  +C+ID+ V+ +SK +
Sbjct:    9 TIVDGWFREISDTMWPGQAMTLKVEKVLHHEKSKYQDVLIFKSTTYGNVLVLDNVIQATERDEFAYQEMIAHLALNSHPNPKKVLVIGGGDGGVLREVVKHDSVEEAWLCDIDEAVIRLSKEY 131          
The following BLAST results are available for this feature:
BLAST of FC921486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 196
Match NameE-valueIdentityDescription
SPDE_COFAR1.061e-5887.40Spermidine synthase OS=Coffea arabica PE=2 SV=1[more]
SPD1_ORYSJ1.532e-5787.90Spermidine synthase 1 OS=Oryza sativa subsp. japon... [more]
PMT1_TOBAC2.457e-3954.67Putrescine N-methyltransferase 1 OS=Nicotiana taba... [more]
PMT3_TOBAC7.148e-3958.04Putrescine N-methyltransferase 3 OS=Nicotiana taba... [more]
PMT2_TOBAC1.592e-3851.50Putrescine N-methyltransferase 2 OS=Nicotiana taba... [more]
PMT4_TOBAC3.922e-3753.38Putrescine N-methyltransferase 4 OS=Nicotiana taba... [more]
SPEE_DICDI2.811e-3559.32Spermidine synthase OS=Dictyostelium discoideum GN... [more]
SPEE_SCHPO4.794e-3561.02Spermidine synthase OS=Schizosaccharomyces pombe G... [more]
SPEE_MOUSE1.395e-3456.91Spermidine synthase OS=Mus musculus GN=Srm PE=2 SV... [more]
SPEE_YEAST2.379e-3459.35Spermidine synthase OS=Saccharomyces cerevisiae GN... [more]

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Properties
Property NameValue
Genbank descriptionC32105E05EF RVDevelopN Citrus clementina cDNA clone C32105E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921486 ID=FC921486; Name=FC921486; organism=Citrus clementina; type=EST; length=690bp
GATTTTAATTTTTCTTTTTATATATAAAAGGCAAAGAGGGACGGAGATTC
TGTTTGTGTGGCGCCTCTTGACTCCCGAGAGTTGCCTCGGCAGTCAGTTT
TCATTAGAAGTGAAGTGATTGTTGGGTTTTCGGGGGTTTGAAAGCAGAAA
GAATAATCAATAATAATATCTGTTATGGCGGAAACTGGGTCTGCTGCTGC
CACTGATTTGCCGTTGAAGAGGCCGAGAGATGACGGAGAGAAGGAGGCTA
ATAACAACAATAACGGGAGTGTGTTGATGGAGATGGACTCTAACAAACAG
CCTGATTGTATCTCCTCTGTTATTCCTGGCTGGTTCTCTGAAATCAGCCC
AATGTGGCCCGGTGAGGCACATTCATTGAAGGTTGAGAAAATCTTGTTTC
AAGGGAAGTCTGATTACCAGAATGTCACGGTCTTTCAGTCTTCAACATAT
GGGAAGGTTCTTATTTTGGATGGGGTGATTCAGCTTACTGAGAGGGATGA
ATGTGCATATCAAGAAATGATCACTCACCTTCCACTTTGTTCAATTCCAA
ACCCGAAGAAGGTTCTGGTAATTGGTGGAGGAGATGGTGGGGTCTTGCGG
GAAGTATCTCGTCATTCTTCTGTTGAGAAGATTGATATCTGTGAAATTGA
TAAAATGGTAGTTGATGTCTCTAAACATTTTTCCCTGATG
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