FC921486
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPDE_COFAR (Spermidine synthase OS=Coffea arabica PE=2 SV=1) HSP 1 Score: 226.483 bits (576), Expect = 1.061e-58 Identity = 111/127 (87.40%), Postives = 116/127 (91.34%), Query Frame = 1 Query: 301 PDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681 PD +SSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNV VFQSSTYGKVL+LDGVIQLTERDECAYQEMI HLPLCSIP+PKKVLVI VLREV+RH SVE+IDICEIDKMVVDVSK F Sbjct: 17 PDGVSSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMIAHLPLCSIPSPKKVLVIGGGDGGVLREVARHLSVEQIDICEIDKMVVDVSKQF 143
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPD1_ORYSJ (Spermidine synthase 1 OS=Oryza sativa subsp. japonica GN=SPDSYN1 PE=2 SV=1) HSP 1 Score: 222.631 bits (566), Expect = 1.532e-57 Identity = 109/124 (87.90%), Postives = 115/124 (92.74%), Query Frame = 1 Query: 310 ISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681 IS+VIPGWFSEISPMWPGEAHSLKVEK+LFQGKSDYQNV VFQSSTYGKVL+LDGVIQ+TERDECAYQEMITHLPLCSI +PKKVLVI VLREVSRHSSVE+IDICEIDKMVVDVSK F Sbjct: 27 ISAVIPGWFSEISPMWPGEAHSLKVEKVLFQGKSDYQNVMVFQSSTYGKVLVLDGVIQVTERDECAYQEMITHLPLCSIKDPKKVLVIGGGDGGVLREVSRHSSVEQIDICEIDKMVVDVSKQF 150
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: PMT1_TOBAC (Putrescine N-methyltransferase 1 OS=Nicotiana tabacum GN=PMT1 PE=2 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 2.457e-39 Identity = 82/150 (54.67%), Postives = 101/150 (67.33%), Query Frame = 1 Query: 232 DGEKEANNNNNGSVLMEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681 +G + + + + N+ S+ PGWFSE S +WPGEA SLKVEK+LFQGKSDYQ+V +F+S+TYGKVL LDG IQ TE Y EMI HLPL SIPNPKKVL+I L E+ R+ S+EKIDI EID +VVDVS+ F Sbjct: 55 NGHQNGTSEQQNGTISHDNGNELLGSSDSIKPGWFSEFSALWPGEAFSLKVEKLLFQGKSDYQDVMLFESATYGKVLTLDGAIQHTENGGFPYTEMIVHLPLGSIPNPKKVLIIGGGIGFTLFEMLRYPSIEKIDIVEIDDVVVDVSRKF 204
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: PMT3_TOBAC (Putrescine N-methyltransferase 3 OS=Nicotiana tabacum GN=PMT3 PE=3 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 7.148e-39 Identity = 83/143 (58.04%), Postives = 104/143 (72.73%), Query Frame = 1 Query: 253 NNNNGSVLMEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681 +++NG+ L + S+ +S+ PGWFSE S +WPGEA SLKVEK+LFQGKSDYQ+V +F+S+TYGKVL LDG IQ TE Y EMI HLPL SIPNPKKVL+I L E+ R+ ++EKIDI EID +VVDVS+ F Sbjct: 74 SHDNGNELQLLGSS------NSIKPGWFSEFSALWPGEAFSLKVEKLLFQGKSDYQDVMLFESATYGKVLTLDGAIQHTENGGFPYTEMIVHLPLGSIPNPKKVLIIGGGIGFTLFEMLRYPTIEKIDIVEIDDVVVDVSRKF 210
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: PMT2_TOBAC (Putrescine N-methyltransferase 2 OS=Nicotiana tabacum GN=PMT2 PE=3 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 1.592e-38 Identity = 86/167 (51.50%), Postives = 109/167 (65.27%), Query Frame = 1 Query: 208 LPLKRPRDDGEKEANNNNNGSV-----LMEMDSNKQ----PDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681 +P+ + K N + NG+ + +D+ + +CI PGWFSE S +WPGEA SLKVEK+LFQGKSDYQ+V +F+S+TYGKVL LDG IQ TE Y EMI HLPL SIPNPKKVL+I L E+ R+ ++EKIDI EID +VVDVS+ F Sbjct: 19 IPMNGHHNGTSKHQNGHKNGTSEQQNGTISLDNGNELLGNSNCIK---PGWFSEFSALWPGEAFSLKVEKLLFQGKSDYQDVMLFESATYGKVLTLDGAIQHTENGGFPYTEMIVHLPLGSIPNPKKVLIIGGGIGFTLFEMLRYPTIEKIDIVEIDDVVVDVSRKF 182
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: PMT4_TOBAC (Putrescine N-methyltransferase 4 OS=Nicotiana tabacum GN=PMT4 PE=3 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 3.922e-37 Identity = 79/148 (53.38%), Postives = 100/148 (67.57%), Query Frame = 1 Query: 232 DGEKEANNNNNGSVLMEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSK 675 +G + + + + N+ +S+ GWFSE S +WPGEA SLKVEK+LFQGKSDYQ+V +F+S+TYGKVL LDG IQ TE Y EMI HLPL SIPNPKKVL+I L E+ R+ ++EKIDI EID +VVDVS+ Sbjct: 99 NGHQNGTSEQQNGTISHDNGNELLGNSNSIKLGWFSEFSALWPGEAFSLKVEKLLFQGKSDYQDVMLFESATYGKVLTLDGAIQHTENGGFPYTEMIVHLPLGSIPNPKKVLIIGGGIGFTLFEMLRYPTIEKIDIVEIDDVVVDVSR 246
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_DICDI (Spermidine synthase OS=Dictyostelium discoideum GN=spsA PE=3 SV=2) HSP 1 Score: 148.673 bits (374), Expect = 2.811e-35 Identity = 70/118 (59.32%), Postives = 90/118 (76.27%), Query Frame = 1 Query: 328 GWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681 GWFSEIS WPG + SL+VEK+L KS+YQ+ VF+S ++G VL+LDGVIQ TERDE AYQEMITH+PL S P+PK+VLV+ VLREV +H VE + +CEIDK V++ S++F Sbjct: 7 GWFSEISEFWPGNSFSLEVEKVLHHEKSEYQDFLVFKSKSFGNVLVLDGVIQATERDEFAYQEMITHIPLFSHPSPKRVLVVGGGDGGVLREVVKHPLVESVTLCEIDKGVIEASRNF 124
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_SCHPO (Spermidine synthase OS=Schizosaccharomyces pombe GN=SPBC12C2.07c PE=2 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 4.794e-35 Identity = 72/118 (61.02%), Postives = 89/118 (75.42%), Query Frame = 1 Query: 328 GWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681 GWF EI+ MWPG+A +LKV+K+L+ GKS YQ+V VF+S TYG VL+LDG IQ TERDE +YQEMI HL L S PNPKKVLVI VLREV +H VE+ +C+ID+ V+ VSK + Sbjct: 14 GWFREINNMWPGQAMTLKVKKVLYAGKSKYQDVLVFESETYGHVLVLDGAIQATERDEFSYQEMIAHLALNSHPNPKKVLVIGGGDGGVLREVVKHECVEEAILCDIDEDVIKVSKQY 131
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_MOUSE (Spermidine synthase OS=Mus musculus GN=Srm PE=2 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 1.395e-34 Identity = 70/123 (56.91%), Postives = 92/123 (74.80%), Query Frame = 1 Query: 313 SSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681 +++ GWF E +WPG+A SL+VE++L +S YQ++ VF+S TYG VL+LDGVIQ TERDE +YQEMI +LPLCS PNP+KVL+I VLREV +H SVE + CEID+ V++VSK F Sbjct: 14 AAIREGWFRETCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIEVSKKF 136
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_YEAST (Spermidine synthase OS=Saccharomyces cerevisiae GN=SPE3 PE=1 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 2.379e-34 Identity = 73/123 (59.35%), Postives = 92/123 (74.80%), Query Frame = 1 Query: 316 SVIPGWFSEISP-MWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681 +++ GWF EIS MWPG+A +LKVEK+L KS YQ+V +F+S+TYG VL+LD VIQ TERDE AYQEMI HL L S PNPKKVLVI VLREV +H SVE+ +C+ID+ V+ +SK + Sbjct: 9 TIVDGWFREISDTMWPGQAMTLKVEKVLHHEKSKYQDVLIFKSTTYGNVLVLDNVIQATERDEFAYQEMIAHLALNSHPNPKKVLVIGGGDGGVLREVVKHDSVEEAWLCDIDEAVIRLSKEY 131 The following BLAST results are available for this feature:
BLAST of FC921486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 196
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Sequences
The
following sequences are available for this feature:
EST sequence >FC921486 ID=FC921486; Name=FC921486; organism=Citrus clementina; type=EST; length=690bpback to top |