FC921486
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_ECO24 (Spermidine synthase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=speE PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 8.216e-19 Identity = 43/100 (43.00%), Postives = 69/100 (69.00%), Query Frame = 1 Query: 382 VEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681 V+ +L+ K+D+Q++ +F+++ +G+V+ LDGV+Q TERDE Y EM+TH+PL + + K VL+I +LREV+RH +VE I + EID VV + + Sbjct: 21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQY 120
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_SHISS (Spermidine synthase OS=Shigella sonnei (strain Ss046) GN=speE PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.073e-18 Identity = 42/100 (42.00%), Postives = 69/100 (69.00%), Query Frame = 1 Query: 382 VEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681 V+ +L+ K+D+Q++ +F+++ +G+V+ LDGV+Q TERDE Y EM+TH+PL + + K VL+I +LREV+RH +VE I + EID +V + + Sbjct: 21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGIVSFCRQY 120
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_CITK8 (Spermidine synthase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=speE PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.073e-18 Identity = 43/100 (43.00%), Postives = 69/100 (69.00%), Query Frame = 1 Query: 382 VEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681 V+ +L+ K+D+Q++ +F+++ +G+V+ LDGV+Q TERDE Y EM+TH+PL + + K VL+I +LREV+RH +VE I + EID VV + + Sbjct: 21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVEIDAGVVSFCRQY 120
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_BACSK (Spermidine synthase OS=Bacillus clausii (strain KSM-K16) GN=speE PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.073e-18 Identity = 40/103 (38.83%), Postives = 69/103 (66.99%), Query Frame = 1 Query: 373 SLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681 ++K+++ L K+D+Q + + ++ +G +L+LDG++ TE+DE Y EM+TH+PL + PNPK VLV+ +RE+ +H SVEK + +ID V++ SK + Sbjct: 16 TMKIKRTLHTEKTDFQQLDMVETEEFGNMLLLDGMVMTTEKDEFVYHEMVTHVPLFTHPNPKHVLVVGGGDGGAIREILKHPSVEKATLVDIDGKVIEYSKTY 118
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_PSESM (Spermidine synthase OS=Pseudomonas syringae pv. tomato GN=speE PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.401e-18 Identity = 44/110 (40.00%), Postives = 73/110 (66.36%), Query Frame = 1 Query: 352 MWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681 ++ G ++EK+L + ++++Q++ +FQ+ G+V+ LDGVIQ TE DE Y EM+TH+P+ + K+VL+I +LREV++H +VE I + EID VV++ K F Sbjct: 8 LYEGYGQRFRMEKMLHEVRTEHQHLVIFQNPRMGRVMALDGVIQTTEADEFIYHEMLTHVPILAHGAAKRVLIIGGGDGGMLREVAKHLTVEHITMVEIDATVVEMCKEF 117
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_CLOBA (Spermidine synthase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=speE PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.401e-18 Identity = 43/116 (37.07%), Postives = 74/116 (63.79%), Query Frame = 1 Query: 352 MWPGEAH------SLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681 +W E H S++V++ L+ +S +Q + + +S +G+ LDG++ +TE+DE Y +MI H+P+ + PN KKVLVI +RE++R+ ++EKID+ EID+ VV+ K + Sbjct: 3 LWYTEKHTEDVKFSIRVDRELYTEQSKFQRIDILESKEFGRFFTLDGLMMVTEKDEFIYHDMIVHVPMATNPNIKKVLVIGAGDGGTIRELTRYKTIEKIDMVEIDESVVEACKKY 118
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_THEPX (Spermidine synthase OS=Thermoanaerobacter sp. (strain X514) GN=speE PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.830e-18 Identity = 45/103 (43.69%), Postives = 68/103 (66.02%), Query Frame = 1 Query: 373 SLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681 SLKV++ L K+ YQ++ + + +G+VL LDG++Q TE+DE Y EMI H+PL + NPK VL++ +REV +H SVE++ + EID+ VV SK + Sbjct: 16 SLKVKETLVVEKTPYQHLAILDTYQFGRVLTLDGILQTTEKDEFVYHEMIVHVPLFTHKNPKSVLIVGGGDGGSVREVLKHPSVERVVLAEIDEAVVRNSKKY 118
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_THEP3 (Spermidine synthase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=speE PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.830e-18 Identity = 45/103 (43.69%), Postives = 68/103 (66.02%), Query Frame = 1 Query: 373 SLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681 SLKV++ L K+ YQ++ + + +G+VL LDG++Q TE+DE Y EMI H+PL + NPK VL++ +REV +H SVE++ + EID+ VV SK + Sbjct: 16 SLKVKETLVVEKTPYQHLAILDTYQFGRVLTLDGILQTTEKDEFVYHEMIVHVPLFTHKNPKSVLIVGGGDGGSVREVLKHPSVERVVLAEIDEAVVRNSKKY 118
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE1_PSEAE (Spermidine synthase 1 OS=Pseudomonas aeruginosa GN=speE1 PE=3 SV=2) HSP 1 Score: 92.8189 bits (229), Expect = 1.830e-18 Identity = 42/110 (38.18%), Postives = 73/110 (66.36%), Query Frame = 1 Query: 352 MWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681 ++ G ++ +L + ++++Q++ +F+++ G+V+ LDGVIQ TE DE Y EM+TH+P+ + ++VL+I +LREV++H SVE+I + EID VVD+ K F Sbjct: 8 LYQGYGQRFSIDNMLHEVRTEHQHLVIFENARMGRVMALDGVIQTTEADEFIYHEMLTHVPILAHGAARRVLIIGGGDGGMLREVAKHKSVERITMVEIDGTVVDMCKEF 117
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_ALKMQ (Spermidine synthase OS=Alkaliphilus metalliredigens (strain QYMF) GN=speE PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.122e-18 Identity = 42/103 (40.78%), Postives = 68/103 (66.02%), Query Frame = 1 Query: 373 SLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681 S KV++ LF +S++Q V V + +GK++ LDG++ +TE+DE Y +MI H+P+ PN K VL+I RE+ R+ S++ +D+ EIDKMV DV++ + Sbjct: 16 SFKVKEHLFSEQSEFQKVDVLDTYEFGKLMTLDGLVMVTEKDEFIYHDMIVHVPMAVNPNIKNVLIIGGGDGGTARELMRYQSIKHVDMVEIDKMVCDVARDY 118 The following BLAST results are available for this feature:
BLAST of FC921486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 196
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC921486 ID=FC921486; Name=FC921486; organism=Citrus clementina; type=EST; length=690bpback to top |