FC921486

Overview
NameFC921486
Unique NameFC921486
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_ECO24 (Spermidine synthase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=speE PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.216e-19
Identity = 43/100 (43.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:  382 VEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            V+ +L+  K+D+Q++ +F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K VL+I      +LREV+RH +VE I + EID  VV   + +
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQY 120          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_SHISS (Spermidine synthase OS=Shigella sonnei (strain Ss046) GN=speE PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.073e-18
Identity = 42/100 (42.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:  382 VEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            V+ +L+  K+D+Q++ +F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K VL+I      +LREV+RH +VE I + EID  +V   + +
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGIVSFCRQY 120          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_CITK8 (Spermidine synthase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=speE PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.073e-18
Identity = 43/100 (43.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:  382 VEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            V+ +L+  K+D+Q++ +F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K VL+I      +LREV+RH +VE I + EID  VV   + +
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVEIDAGVVSFCRQY 120          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_BACSK (Spermidine synthase OS=Bacillus clausii (strain KSM-K16) GN=speE PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.073e-18
Identity = 40/103 (38.83%), Postives = 69/103 (66.99%), Query Frame = 1
Query:  373 SLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            ++K+++ L   K+D+Q + + ++  +G +L+LDG++  TE+DE  Y EM+TH+PL + PNPK VLV+       +RE+ +H SVEK  + +ID  V++ SK +
Sbjct:   16 TMKIKRTLHTEKTDFQQLDMVETEEFGNMLLLDGMVMTTEKDEFVYHEMVTHVPLFTHPNPKHVLVVGGGDGGAIREILKHPSVEKATLVDIDGKVIEYSKTY 118          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_PSESM (Spermidine synthase OS=Pseudomonas syringae pv. tomato GN=speE PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.401e-18
Identity = 44/110 (40.00%), Postives = 73/110 (66.36%), Query Frame = 1
Query:  352 MWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            ++ G     ++EK+L + ++++Q++ +FQ+   G+V+ LDGVIQ TE DE  Y EM+TH+P+ +    K+VL+I      +LREV++H +VE I + EID  VV++ K F
Sbjct:    8 LYEGYGQRFRMEKMLHEVRTEHQHLVIFQNPRMGRVMALDGVIQTTEADEFIYHEMLTHVPILAHGAAKRVLIIGGGDGGMLREVAKHLTVEHITMVEIDATVVEMCKEF 117          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_CLOBA (Spermidine synthase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=speE PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.401e-18
Identity = 43/116 (37.07%), Postives = 74/116 (63.79%), Query Frame = 1
Query:  352 MWPGEAH------SLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            +W  E H      S++V++ L+  +S +Q + + +S  +G+   LDG++ +TE+DE  Y +MI H+P+ + PN KKVLVI       +RE++R+ ++EKID+ EID+ VV+  K +
Sbjct:    3 LWYTEKHTEDVKFSIRVDRELYTEQSKFQRIDILESKEFGRFFTLDGLMMVTEKDEFIYHDMIVHVPMATNPNIKKVLVIGAGDGGTIRELTRYKTIEKIDMVEIDESVVEACKKY 118          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_THEPX (Spermidine synthase OS=Thermoanaerobacter sp. (strain X514) GN=speE PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.830e-18
Identity = 45/103 (43.69%), Postives = 68/103 (66.02%), Query Frame = 1
Query:  373 SLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            SLKV++ L   K+ YQ++ +  +  +G+VL LDG++Q TE+DE  Y EMI H+PL +  NPK VL++       +REV +H SVE++ + EID+ VV  SK +
Sbjct:   16 SLKVKETLVVEKTPYQHLAILDTYQFGRVLTLDGILQTTEKDEFVYHEMIVHVPLFTHKNPKSVLIVGGGDGGSVREVLKHPSVERVVLAEIDEAVVRNSKKY 118          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_THEP3 (Spermidine synthase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=speE PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.830e-18
Identity = 45/103 (43.69%), Postives = 68/103 (66.02%), Query Frame = 1
Query:  373 SLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            SLKV++ L   K+ YQ++ +  +  +G+VL LDG++Q TE+DE  Y EMI H+PL +  NPK VL++       +REV +H SVE++ + EID+ VV  SK +
Sbjct:   16 SLKVKETLVVEKTPYQHLAILDTYQFGRVLTLDGILQTTEKDEFVYHEMIVHVPLFTHKNPKSVLIVGGGDGGSVREVLKHPSVERVVLAEIDEAVVRNSKKY 118          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE1_PSEAE (Spermidine synthase 1 OS=Pseudomonas aeruginosa GN=speE1 PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.830e-18
Identity = 42/110 (38.18%), Postives = 73/110 (66.36%), Query Frame = 1
Query:  352 MWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            ++ G      ++ +L + ++++Q++ +F+++  G+V+ LDGVIQ TE DE  Y EM+TH+P+ +    ++VL+I      +LREV++H SVE+I + EID  VVD+ K F
Sbjct:    8 LYQGYGQRFSIDNMLHEVRTEHQHLVIFENARMGRVMALDGVIQTTEADEFIYHEMLTHVPILAHGAARRVLIIGGGDGGMLREVAKHKSVERITMVEIDGTVVDMCKEF 117          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_ALKMQ (Spermidine synthase OS=Alkaliphilus metalliredigens (strain QYMF) GN=speE PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.122e-18
Identity = 42/103 (40.78%), Postives = 68/103 (66.02%), Query Frame = 1
Query:  373 SLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            S KV++ LF  +S++Q V V  +  +GK++ LDG++ +TE+DE  Y +MI H+P+   PN K VL+I        RE+ R+ S++ +D+ EIDKMV DV++ +
Sbjct:   16 SFKVKEHLFSEQSEFQKVDVLDTYEFGKLMTLDGLVMVTEKDEFIYHDMIVHVPMAVNPNIKNVLIIGGGDGGTARELMRYQSIKHVDMVEIDKMVCDVARDY 118          
The following BLAST results are available for this feature:
BLAST of FC921486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 196
Match NameE-valueIdentityDescription
SPEE_ECO248.216e-1943.00Spermidine synthase OS=Escherichia coli O139:H28 (... [more]
SPEE_SHISS1.073e-1842.00Spermidine synthase OS=Shigella sonnei (strain Ss0... [more]
SPEE_CITK81.073e-1843.00Spermidine synthase OS=Citrobacter koseri (strain ... [more]
SPEE_BACSK1.073e-1838.83Spermidine synthase OS=Bacillus clausii (strain KS... [more]
SPEE_PSESM1.401e-1840.00Spermidine synthase OS=Pseudomonas syringae pv. to... [more]
SPEE_CLOBA1.401e-1837.07Spermidine synthase OS=Clostridium botulinum (stra... [more]
SPEE_THEPX1.830e-1843.69Spermidine synthase OS=Thermoanaerobacter sp. (str... [more]
SPEE_THEP31.830e-1843.69Spermidine synthase OS=Thermoanaerobacter pseudeth... [more]
SPEE1_PSEAE1.830e-1838.18Spermidine synthase 1 OS=Pseudomonas aeruginosa GN... [more]
SPEE_ALKMQ3.122e-1840.78Spermidine synthase OS=Alkaliphilus metalliredigen... [more]

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Properties
Property NameValue
Genbank descriptionC32105E05EF RVDevelopN Citrus clementina cDNA clone C32105E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921486 ID=FC921486; Name=FC921486; organism=Citrus clementina; type=EST; length=690bp
GATTTTAATTTTTCTTTTTATATATAAAAGGCAAAGAGGGACGGAGATTC
TGTTTGTGTGGCGCCTCTTGACTCCCGAGAGTTGCCTCGGCAGTCAGTTT
TCATTAGAAGTGAAGTGATTGTTGGGTTTTCGGGGGTTTGAAAGCAGAAA
GAATAATCAATAATAATATCTGTTATGGCGGAAACTGGGTCTGCTGCTGC
CACTGATTTGCCGTTGAAGAGGCCGAGAGATGACGGAGAGAAGGAGGCTA
ATAACAACAATAACGGGAGTGTGTTGATGGAGATGGACTCTAACAAACAG
CCTGATTGTATCTCCTCTGTTATTCCTGGCTGGTTCTCTGAAATCAGCCC
AATGTGGCCCGGTGAGGCACATTCATTGAAGGTTGAGAAAATCTTGTTTC
AAGGGAAGTCTGATTACCAGAATGTCACGGTCTTTCAGTCTTCAACATAT
GGGAAGGTTCTTATTTTGGATGGGGTGATTCAGCTTACTGAGAGGGATGA
ATGTGCATATCAAGAAATGATCACTCACCTTCCACTTTGTTCAATTCCAA
ACCCGAAGAAGGTTCTGGTAATTGGTGGAGGAGATGGTGGGGTCTTGCGG
GAAGTATCTCGTCATTCTTCTGTTGAGAAGATTGATATCTGTGAAATTGA
TAAAATGGTAGTTGATGTCTCTAAACATTTTTCCCTGATG
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