FC921486

Overview
NameFC921486
Unique NameFC921486
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_ARCFU (Probable spermidine synthase OS=Archaeoglobus fulgidus GN=speE PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.312e-16
Identity = 47/117 (40.17%), Postives = 75/117 (64.10%), Query Frame = 1
Query:  331 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            WF E    + G   ++KV+K L++ +   Q V ++++ + GK+L++DG IQLTE DE  Y EM+ H+P+ S  NP+KV VI       LREV +H +VE+  + +ID+ V+D+S+ F
Sbjct:    3 WFFEY---YDGCGLAIKVKKKLYEAEG-VQKVEIYETESMGKMLVIDGKIQLTELDEPFYHEMLVHVPMLSHENPRKVAVIGGGDGGALREVLKH-NVERAVLVDIDRNVIDLSRKF 114          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_THET8 (Spermidine synthase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=speE PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.817e-16
Identity = 42/106 (39.62%), Postives = 67/106 (63.21%), Query Frame = 1
Query:  358 PGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSK 675
            P E    ++E+++  GK+ +Q+  +F+S  +GKVLILD  +Q TERDE  Y E + H  + + P PK+VL++       LREV +H +VEK  + +ID  +V+V+K
Sbjct:   13 PYETLVRRMERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAK 118          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_THET2 (Spermidine synthase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=speE PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.817e-16
Identity = 42/106 (39.62%), Postives = 67/106 (63.21%), Query Frame = 1
Query:  358 PGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSK 675
            P E    ++E+++  GK+ +Q+  +F+S  +GKVLILD  +Q TERDE  Y E + H  + + P PK+VL++       LREV +H +VEK  + +ID  +V+V+K
Sbjct:   13 PYETLVRRMERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAK 118          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_SULTO (Probable spermidine synthase OS=Sulfolobus tokodaii GN=speE PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.985e-16
Identity = 41/117 (35.04%), Postives = 66/117 (56.41%), Query Frame = 1
Query:  331 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            W   I    P E H   + K++ + K+ YQ   + + + +GK LILDG IQ T  DE  Y E + H  L SI NP+K+L++       LREV +H +++ + + +ID +V+D +K +
Sbjct:    4 WHWHIEWQTPYEFHGHAITKVIAEEKTPYQRALLVELARFGKALILDGKIQSTITDEFIYHEALVHPLLLSINNPEKILILGGGEGATLREVLKHKTIKNVTMVDIDPVVIDFAKKY 120          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_NITOC (Spermidine synthase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=speE PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.510e-16
Identity = 42/118 (35.59%), Postives = 71/118 (60.17%), Query Frame = 1
Query:  328 GWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            GWF+E+     G A SL + + L    + YQ + ++Q+ T+G+++++DG I L+ RD   Y EM+ H  L + P+P++VL+I       LREV +H  VEK+   EID+ V  +++ +
Sbjct:    7 GWFTEVCKEG-GLAFSLAIREKLHAETTPYQYIEIYQTETFGRLMVIDGFIMLSGRDNFFYHEMMAHPVLFTHPHPQRVLIIGGGDCGTLREVLKHDVVEKVQQVEIDERVTRLAEKY 123          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_PYRHO (Probable spermidine synthase OS=Pyrococcus horikoshii GN=speE PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.110e-15
Identity = 36/107 (33.64%), Postives = 67/107 (62.62%), Query Frame = 1
Query:  361 GEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            G   + KV++ + + +S+YQ + V+++  +GK+L +DG +QL    E +Y E + H  + + PNP++VL+I       +REV +H  VE++ + EIDK V+++S  +
Sbjct:   13 GYGVAFKVKRKILEEQSEYQKIEVYETEGFGKLLAIDGTVQLVTEGEKSYHEPLVHPAMLAHPNPRRVLIIGGGDGGAIREVLKHEEVEEVIMVEIDKKVIEISAKY 119          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_HALHL (Spermidine synthase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=speE PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.110e-15
Identity = 44/119 (36.97%), Postives = 73/119 (61.34%), Query Frame = 1
Query:  328 GWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSK-HF 681
            GWF+E      G A SL +++ + + +S+YQ++ V+++  +G++L+LDG + LTERDE  Y EM+ H  L +   P++V ++      +LREV RH  VE     E+D+ V  V++ HF
Sbjct:    4 GWFTEAVED-EGVAFSLAIDERVHEEQSEYQHIEVYRTRRWGRLLVLDGCVMLTERDEFLYHEMMAHPALFAHREPRRVAIVGGGDCGILREVLRHPGVEHTLQVELDERVTRVAETHF 121          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_SULIY (Probable spermidine synthase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=speE PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.450e-15
Identity = 44/119 (36.97%), Postives = 70/119 (58.82%), Query Frame = 1
Query:  328 GWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPN-PKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            GW   +    P E H   +EK+  + K+ YQ+VT+ + + +GK LI+DG +Q T  DE  Y E++ H  L S+P  PK VL++       LREV ++ SVEK  + +ID+ V++ +K +
Sbjct:    3 GWHWLLEWQTPYEFHGHLIEKVFAEEKTPYQHVTLVEFTRFGKGLIIDGKVQSTLYDEHIYHELLVHPLLLSLPKPPKNVLILGGGEGATLREVLKYKSVEKAVMVDIDEKVIEFAKKY 121          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_SULIN (Probable spermidine synthase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=speE PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.450e-15
Identity = 44/119 (36.97%), Postives = 70/119 (58.82%), Query Frame = 1
Query:  328 GWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPN-PKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            GW   +    P E H   +EK+  + K+ YQ+VT+ + + +GK LI+DG +Q T  DE  Y E++ H  L S+P  PK VL++       LREV ++ SVEK  + +ID+ V++ +K +
Sbjct:    3 GWHWLLEWQTPYEFHGHLIEKVFAEEKTPYQHVTLVEFTRFGKGLIIDGKVQSTLYDEHIYHELLVHPLLLSLPKPPKNVLILGGGEGATLREVLKYKSVEKAVMVDIDEKVIEFAKKY 121          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_SULIM (Probable spermidine synthase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=speE PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.450e-15
Identity = 44/119 (36.97%), Postives = 70/119 (58.82%), Query Frame = 1
Query:  328 GWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPN-PKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            GW   +    P E H   +EK+  + K+ YQ+VT+ + + +GK LI+DG +Q T  DE  Y E++ H  L S+P  PK VL++       LREV ++ SVEK  + +ID+ V++ +K +
Sbjct:    3 GWHWLLEWQTPYEFHGHLIEKVFAEEKTPYQHVTLVEFTRFGKGLIIDGKVQSTLYDEHIYHELLVHPLLLSLPKPPKNVLILGGGEGATLREVLKYKSVEKAVMVDIDEKVIEFAKKY 121          
The following BLAST results are available for this feature:
BLAST of FC921486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 196
Match NameE-valueIdentityDescription
SPEE_ARCFU1.312e-1640.17Probable spermidine synthase OS=Archaeoglobus fulg... [more]
SPEE_THET83.817e-1639.62Spermidine synthase OS=Thermus thermophilus (strai... [more]
SPEE_THET23.817e-1639.62Spermidine synthase OS=Thermus thermophilus (strai... [more]
SPEE_SULTO4.985e-1635.04Probable spermidine synthase OS=Sulfolobus tokodai... [more]
SPEE_NITOC6.510e-1635.59Spermidine synthase OS=Nitrosococcus oceani (strai... [more]
SPEE_PYRHO1.110e-1533.64Probable spermidine synthase OS=Pyrococcus horikos... [more]
SPEE_HALHL1.110e-1536.97Spermidine synthase OS=Halorhodospira halophila (s... [more]
SPEE_SULIY1.450e-1536.97Probable spermidine synthase OS=Sulfolobus islandi... [more]
SPEE_SULIN1.450e-1536.97Probable spermidine synthase OS=Sulfolobus islandi... [more]
SPEE_SULIM1.450e-1536.97Probable spermidine synthase OS=Sulfolobus islandi... [more]

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Properties
Property NameValue
Genbank descriptionC32105E05EF RVDevelopN Citrus clementina cDNA clone C32105E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921486 ID=FC921486; Name=FC921486; organism=Citrus clementina; type=EST; length=690bp
GATTTTAATTTTTCTTTTTATATATAAAAGGCAAAGAGGGACGGAGATTC
TGTTTGTGTGGCGCCTCTTGACTCCCGAGAGTTGCCTCGGCAGTCAGTTT
TCATTAGAAGTGAAGTGATTGTTGGGTTTTCGGGGGTTTGAAAGCAGAAA
GAATAATCAATAATAATATCTGTTATGGCGGAAACTGGGTCTGCTGCTGC
CACTGATTTGCCGTTGAAGAGGCCGAGAGATGACGGAGAGAAGGAGGCTA
ATAACAACAATAACGGGAGTGTGTTGATGGAGATGGACTCTAACAAACAG
CCTGATTGTATCTCCTCTGTTATTCCTGGCTGGTTCTCTGAAATCAGCCC
AATGTGGCCCGGTGAGGCACATTCATTGAAGGTTGAGAAAATCTTGTTTC
AAGGGAAGTCTGATTACCAGAATGTCACGGTCTTTCAGTCTTCAACATAT
GGGAAGGTTCTTATTTTGGATGGGGTGATTCAGCTTACTGAGAGGGATGA
ATGTGCATATCAAGAAATGATCACTCACCTTCCACTTTGTTCAATTCCAA
ACCCGAAGAAGGTTCTGGTAATTGGTGGAGGAGATGGTGGGGTCTTGCGG
GAAGTATCTCGTCATTCTTCTGTTGAGAAGATTGATATCTGTGAAATTGA
TAAAATGGTAGTTGATGTCTCTAAACATTTTTCCCTGATG
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