FC921486

Overview
NameFC921486
Unique NameFC921486
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_XANOM (Spermidine synthase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=speE PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.603e-14
Identity = 37/107 (34.58%), Postives = 64/107 (59.81%), Query Frame = 1
Query:  361 GEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            G A   ++   L + +S +Q + ++Q++ +GK++++DG + LT RD   Y EMI+H  L + P PK+V++I       LREV +H  VE    C+ID+ V  +S+ +
Sbjct:   16 GSAIGFRISGKLDEVQSLFQKIEIYQTTDWGKLMLIDGAVMLTSRDNFFYHEMISHPALFTHPTPKRVVIIGGGDCGTLREVLKHPGVESATQCDIDEQVTRMSEKY 122          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_ALHEH (Spermidine synthase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=speE PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.603e-14
Identity = 37/117 (31.62%), Postives = 71/117 (60.68%), Query Frame = 1
Query:  331 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            WF+E+     G A SL+V + L + ++ +Q++ V+++  +G++L++DG + LT RD   Y EM++H  L + P+P++V +I      +LREV +H  +E +   +ID  V   ++ +
Sbjct:    7 WFTEVLEE-EGMAFSLRVREKLHEERTAFQHIEVYETEAWGRLLVIDGCVMLTSRDNFVYHEMMSHPALFTHPDPRRVAIIGGGDCGMLREVLKHPGIESVVQVDIDAGVTRAAERY 122          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_PYRAR (Probable spermidine synthase OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=speE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.094e-14
Identity = 42/120 (35.00%), Postives = 67/120 (55.83%), Query Frame = 1
Query:  322 IPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            +PG    + P+    +  +KV ++L   +S YQ + V ++  YG+ LILD  IQ +  DE  Y E + H  + + P P+ VL++       LREV +H +VEK  + +ID  VV++SK F
Sbjct:    4 VPGPIVLVEPLSGNTSLLIKVNEVLAVRRSRYQEIMVVETEDYGRALILDDYIQSSYYDEAFYHESLVHPAMVTHPAPRDVLILGGGEGATLREVLKHPTVEKAVMVDIDGDVVELSKRF 123          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_METCA (Spermidine synthase OS=Methylococcus capsulatus GN=speE PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.735e-14
Identity = 40/117 (34.19%), Postives = 69/117 (58.97%), Query Frame = 1
Query:  331 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            WF+E  P   G A SLK+   L + ++ +Q + ++ + ++GK++++DG   +++RD   Y EM+TH  L + P PK V +I       LREV +HS VEK    +ID+ V  +++ +
Sbjct:    7 WFTESYPD-NGSALSLKIRAKLHEEQTPFQRIEIYDTESFGKLMVIDGCTMVSDRDNFLYHEMMTHPVLYTHPAPKTVWIIGGGDCGSLREVLKHSEVEKAVQIDIDERVTRLAERY 122          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_XYLFT (Spermidine synthase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=speE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.093e-14
Identity = 41/118 (34.75%), Postives = 68/118 (57.63%), Query Frame = 1
Query:  331 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVS-KHF 681
            WF+E      G A   +V   L + +S +Q + ++ S+ +GK++++DG + LT RD   Y EMI+H  L +   PK V++I       LREV +H  +E++  C+ID+ V  ++ KHF
Sbjct:    7 WFTEHFQT-TGSAIGFRVTGKLDEVQSPFQKIEIYNSTDWGKLMVIDGALMLTSRDNFLYHEMISHPALFTHTAPKCVVIIGGGDCGTLREVLKHPDIEQVTQCDIDEQVTRMAEKHF 123          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_XYLFM (Spermidine synthase OS=Xylella fastidiosa (strain M12) GN=speE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.093e-14
Identity = 41/118 (34.75%), Postives = 68/118 (57.63%), Query Frame = 1
Query:  331 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVS-KHF 681
            WF+E      G A   +V   L + +S +Q + ++ S+ +GK++++DG + LT RD   Y EMI+H  L +   PK V++I       LREV +H  +E++  C+ID+ V  ++ KHF
Sbjct:    7 WFTEHFQA-TGSAIGFRVTGKLDEVQSPFQKIEIYNSTDWGKLMVIDGALMLTSRDNFIYHEMISHPALFTHTAPKCVVIIGGGDCGTLREVLKHPDIEQVTQCDIDEQVTRMAEKHF 123          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_XYLF2 (Spermidine synthase OS=Xylella fastidiosa (strain M23) GN=speE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.093e-14
Identity = 41/118 (34.75%), Postives = 68/118 (57.63%), Query Frame = 1
Query:  331 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVS-KHF 681
            WF+E      G A   +V   L + +S +Q + ++ S+ +GK++++DG + LT RD   Y EMI+H  L +   PK V++I       LREV +H  +E++  C+ID+ V  ++ KHF
Sbjct:    7 WFTEHFQT-TGSAIGFRVTGKLDEVQSPFQKIEIYNSTDWGKLMVIDGALMLTSRDNFLYHEMISHPALFTHTAPKCVVIIGGGDCGTLREVLKHPDIEQVTQCDIDEQVTRMAEKHF 123          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_XYLFA (Spermidine synthase OS=Xylella fastidiosa GN=speE PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.958e-14
Identity = 40/118 (33.90%), Postives = 68/118 (57.63%), Query Frame = 1
Query:  331 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVS-KHF 681
            WF+E      G A   ++   L + +S +Q + ++ S+ +GK++++DG + LT RD   Y EMI+H  L +   PK V++I       LREV +H  +E++  C+ID+ V  ++ KHF
Sbjct:    7 WFTEHFQA-TGSAIGFRITGKLDEVQSPFQKIEIYNSTDWGKLMVIDGALMLTSRDNFLYHEMISHPALFTHTAPKCVVIIGGGDCGTLREVLKHPDIEQVTQCDIDEQVTRMAEKHF 123          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_XANCP (Spermidine synthase OS=Xanthomonas campestris pv. campestris GN=speE PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.958e-14
Identity = 37/107 (34.58%), Postives = 63/107 (58.88%), Query Frame = 1
Query:  361 GEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            G A   ++   L + +S +Q + ++Q++ +GK++I+DG + LT RD   Y EMI+H  L +   PK+V++I       LREV +H  VE    C+ID+ V  +S+ +
Sbjct:   16 GSAIGYRISGKLDEVQSPFQKIEIYQTTDWGKLMIIDGAVMLTSRDNFFYHEMISHPALFTHAAPKRVVIIGGGDCGTLREVLKHPGVESATQCDIDEQVTRMSEKY 122          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_XANCB (Spermidine synthase OS=Xanthomonas campestris pv. campestris (strain B100) GN=speE PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.958e-14
Identity = 37/107 (34.58%), Postives = 63/107 (58.88%), Query Frame = 1
Query:  361 GEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            G A   ++   L + +S +Q + ++Q++ +GK++I+DG + LT RD   Y EMI+H  L +   PK+V++I       LREV +H  VE    C+ID+ V  +S+ +
Sbjct:   16 GSAIGYRISGKLDEVQSPFQKIEIYQTTDWGKLMIIDGAVMLTSRDNFFYHEMISHPALFTHAAPKRVVIIGGGDCGTLREVLKHPGVESATQCDIDEQVTRMSEKY 122          
The following BLAST results are available for this feature:
BLAST of FC921486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 196
Match NameE-valueIdentityDescription
SPEE_XANOM1.603e-1434.58Spermidine synthase OS=Xanthomonas oryzae pv. oryz... [more]
SPEE_ALHEH1.603e-1431.62Spermidine synthase OS=Alkalilimnicola ehrlichei (... [more]
SPEE_PYRAR2.094e-1435.00Probable spermidine synthase OS=Pyrobaculum arsena... [more]
SPEE_METCA2.735e-1434.19Spermidine synthase OS=Methylococcus capsulatus GN... [more]
SPEE_XYLFT6.093e-1434.75Spermidine synthase OS=Xylella fastidiosa (strain ... [more]
SPEE_XYLFM6.093e-1434.75Spermidine synthase OS=Xylella fastidiosa (strain ... [more]
SPEE_XYLF26.093e-1434.75Spermidine synthase OS=Xylella fastidiosa (strain ... [more]
SPEE_XYLFA7.958e-1433.90Spermidine synthase OS=Xylella fastidiosa GN=speE ... [more]
SPEE_XANCP7.958e-1434.58Spermidine synthase OS=Xanthomonas campestris pv. ... [more]
SPEE_XANCB7.958e-1434.58Spermidine synthase OS=Xanthomonas campestris pv. ... [more]

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Properties
Property NameValue
Genbank descriptionC32105E05EF RVDevelopN Citrus clementina cDNA clone C32105E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921486 ID=FC921486; Name=FC921486; organism=Citrus clementina; type=EST; length=690bp
GATTTTAATTTTTCTTTTTATATATAAAAGGCAAAGAGGGACGGAGATTC
TGTTTGTGTGGCGCCTCTTGACTCCCGAGAGTTGCCTCGGCAGTCAGTTT
TCATTAGAAGTGAAGTGATTGTTGGGTTTTCGGGGGTTTGAAAGCAGAAA
GAATAATCAATAATAATATCTGTTATGGCGGAAACTGGGTCTGCTGCTGC
CACTGATTTGCCGTTGAAGAGGCCGAGAGATGACGGAGAGAAGGAGGCTA
ATAACAACAATAACGGGAGTGTGTTGATGGAGATGGACTCTAACAAACAG
CCTGATTGTATCTCCTCTGTTATTCCTGGCTGGTTCTCTGAAATCAGCCC
AATGTGGCCCGGTGAGGCACATTCATTGAAGGTTGAGAAAATCTTGTTTC
AAGGGAAGTCTGATTACCAGAATGTCACGGTCTTTCAGTCTTCAACATAT
GGGAAGGTTCTTATTTTGGATGGGGTGATTCAGCTTACTGAGAGGGATGA
ATGTGCATATCAAGAAATGATCACTCACCTTCCACTTTGTTCAATTCCAA
ACCCGAAGAAGGTTCTGGTAATTGGTGGAGGAGATGGTGGGGTCTTGCGG
GAAGTATCTCGTCATTCTTCTGTTGAGAAGATTGATATCTGTGAAATTGA
TAAAATGGTAGTTGATGTCTCTAAACATTTTTCCCTGATG
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