FC921486

Overview
NameFC921486
Unique NameFC921486
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_YERPE (Spermidine synthase OS=Yersinia pestis GN=speE PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.268e-19
Identity = 45/100 (45.00%), Postives = 70/100 (70.00%), Query Frame = 1 
Query:  382 VEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            VE +LF+ K+++Q++ +F++   G+V+ LDGV+Q TERDE  Y EM+TH+PL +    KKVL+I      +LREVSRH ++E+I + EID  VV+  + +
Sbjct:   21 VENVLFREKTEHQDLVIFENPELGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGQAKKVLIIGGGDGAMLREVSRHKNIEQITMVEIDAGVVEFCRQY 120
[Close]
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_YERPA (Spermidine synthase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=speE PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.268e-19
Identity = 45/100 (45.00%), Postives = 70/100 (70.00%), Query Frame = 1 
Query:  382 VEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            VE +LF+ K+++Q++ +F++   G+V+ LDGV+Q TERDE  Y EM+TH+PL +    KKVL+I      +LREVSRH ++E+I + EID  VV+  + +
Sbjct:   21 VENVLFREKTEHQDLVIFENPELGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGQAKKVLIIGGGDGAMLREVSRHKNIEQITMVEIDAGVVEFCRQY 120
[Close]
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE1_THETN (Spermidine synthase 1 OS=Thermoanaerobacter tengcongensis GN=speE1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.656e-19
Identity = 46/103 (44.66%), Postives = 70/103 (67.96%), Query Frame = 1 
Query:  373 SLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            S+KV++ L   K+ YQ++ +  S  +G+VL+LDG++Q TE+DE  Y EMI H+PL +  NPK VL+I       +REV +HSSVE++ + EID+ V+  SK +
Sbjct:   16 SIKVKETLVVEKTPYQHLAILDSYQFGRVLVLDGILQTTEKDEFVYHEMIVHVPLFTHKNPKDVLIIGGGDGGSVREVLKHSSVERVVLAEIDEAVIRNSKKY 118
[Close]
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_YERE8 (Spermidine synthase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=speE PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.162e-19
Identity = 44/100 (44.00%), Postives = 70/100 (70.00%), Query Frame = 1 
Query:  382 VEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            VE +L++ K+++Q++ +F++   G+V+ LDGV+Q TERDE  Y EM+TH+PL +    KKVL+I      +LREVSRH ++E+I + EID  VV+  + +
Sbjct:   21 VENVLYREKTEHQDLVIFENPVLGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGQAKKVLIIGGGDGAMLREVSRHKNIEQITMVEIDAGVVEFCRQY 120
[Close]
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_SERP5 (Spermidine synthase OS=Serratia proteamaculans (strain 568) GN=speE PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.162e-19
Identity = 45/100 (45.00%), Postives = 69/100 (69.00%), Query Frame = 1 
Query:  382 VEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            VE +L++ K+++Q++ +F++   G+V+ LDGV+Q TERDE  Y EM+TH+PL +    KKVL+I      +LREVSRH  VE+I + EID  VV+  + +
Sbjct:   21 VENVLYREKTEHQDLVIFENPVLGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGQAKKVLIIGGGDGAMLREVSRHQGVEQITMVEIDAGVVEFCRQY 120
[Close]
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_CLOTE (Spermidine synthase OS=Clostridium tetani GN=speE PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.162e-19
Identity = 44/101 (43.56%), Postives = 70/101 (69.31%), Query Frame = 1 
Query:  379 KVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVV-DVSKH 678
            K+++ L + K++YQ++ +  +   G++L+LDG++Q + +DE  Y EMITH+PL + PNPKKVLV+       +RE+ +H SVEK  +CEID+ VV +  KH
Sbjct:   18 KIKETLVRKKTEYQDLAIVDTYALGRMLVLDGIVQTSIKDEYVYHEMITHIPLYTHPNPKKVLVVGGGDGGTIREILKHPSVEKAVLCEIDEEVVKECKKH 118
[Close]
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_BACHD (Spermidine synthase OS=Bacillus halodurans GN=speE PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.162e-19
Identity = 43/101 (42.57%), Postives = 67/101 (66.34%), Query Frame = 1 
Query:  379 KVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            K+++ L   K+D+Q + V ++  +G +L+LDG++  TE+DE  Y EM+ H+PL + PNPK VLV+      V+REV +H SVEK  + EID  V++ SK +
Sbjct:   18 KIKRTLHTEKTDFQQLDVIETEEFGNMLVLDGMVMTTEKDEFVYHEMVAHVPLFTHPNPKHVLVVGGGDGGVIREVLKHPSVEKATLVEIDGKVIEYSKKY 118
[Close]
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_YERPY (Spermidine synthase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=speE PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.824e-19
Identity = 44/100 (44.00%), Postives = 70/100 (70.00%), Query Frame = 1 
Query:  382 VEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            VE +L++ K+++Q++ +F++   G+V+ LDGV+Q TERDE  Y EM+TH+PL +    KKVL+I      +LREVSRH ++E+I + EID  VV+  + +
Sbjct:   21 VENVLYREKTEHQDLVIFENPELGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGQAKKVLIIGGGDGAMLREVSRHKNIEQITMVEIDAGVVEFCRQY 120
[Close]
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_YERPS (Spermidine synthase OS=Yersinia pseudotuberculosis GN=speE PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.824e-19
Identity = 44/100 (44.00%), Postives = 70/100 (70.00%), Query Frame = 1 
Query:  382 VEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            VE +L++ K+++Q++ +F++   G+V+ LDGV+Q TERDE  Y EM+TH+PL +    KKVL+I      +LREVSRH ++E+I + EID  VV+  + +
Sbjct:   21 VENVLYREKTEHQDLVIFENPELGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGQAKKVLIIGGGDGAMLREVSRHKNIEQITMVEIDAGVVEFCRQY 120
[Close]
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_YERPB (Spermidine synthase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=speE PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.824e-19
Identity = 44/100 (44.00%), Postives = 70/100 (70.00%), Query Frame = 1 
Query:  382 VEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            VE +L++ K+++Q++ +F++   G+V+ LDGV+Q TERDE  Y EM+TH+PL +    KKVL+I      +LREVSRH ++E+I + EID  VV+  + +
Sbjct:   21 VENVLYREKTEHQDLVIFENPELGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGQAKKVLIIGGGDGAMLREVSRHKNIEQITMVEIDAGVVEFCRQY 120
The following BLAST results are available for this feature:
BLAST of FC921486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 196
Match NameE-valueIdentityDescription
SPEE_YERPE1.268e-1945.00Spermidine synthase OS=Yersinia pestis GN=speE PE=... [more]
SPEE_YERPA1.268e-1945.00Spermidine synthase OS=Yersinia pestis bv. Antiqua... [more]
SPEE1_THETN1.656e-1944.66Spermidine synthase 1 OS=Thermoanaerobacter tengco... [more]
SPEE_YERE82.162e-1944.00Spermidine synthase OS=Yersinia enterocolitica ser... [more]
SPEE_SERP52.162e-1945.00Spermidine synthase OS=Serratia proteamaculans (st... [more]
SPEE_CLOTE2.162e-1943.56Spermidine synthase OS=Clostridium tetani GN=speE ... [more]
SPEE_BACHD2.162e-1942.57Spermidine synthase OS=Bacillus halodurans GN=speE... [more]
SPEE_YERPY2.824e-1944.00Spermidine synthase OS=Yersinia pseudotuberculosis... [more]
SPEE_YERPS2.824e-1944.00Spermidine synthase OS=Yersinia pseudotuberculosis... [more]
SPEE_YERPB2.824e-1944.00Spermidine synthase OS=Yersinia pseudotuberculosis... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32105E05EF RVDevelopN Citrus clementina cDNA clone C32105E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921486 ID=FC921486; Name=FC921486; organism=Citrus clementina; type=EST; length=690bp
GATTTTAATTTTTCTTTTTATATATAAAAGGCAAAGAGGGACGGAGATTC
TGTTTGTGTGGCGCCTCTTGACTCCCGAGAGTTGCCTCGGCAGTCAGTTT
TCATTAGAAGTGAAGTGATTGTTGGGTTTTCGGGGGTTTGAAAGCAGAAA
GAATAATCAATAATAATATCTGTTATGGCGGAAACTGGGTCTGCTGCTGC
CACTGATTTGCCGTTGAAGAGGCCGAGAGATGACGGAGAGAAGGAGGCTA
ATAACAACAATAACGGGAGTGTGTTGATGGAGATGGACTCTAACAAACAG
CCTGATTGTATCTCCTCTGTTATTCCTGGCTGGTTCTCTGAAATCAGCCC
AATGTGGCCCGGTGAGGCACATTCATTGAAGGTTGAGAAAATCTTGTTTC
AAGGGAAGTCTGATTACCAGAATGTCACGGTCTTTCAGTCTTCAACATAT
GGGAAGGTTCTTATTTTGGATGGGGTGATTCAGCTTACTGAGAGGGATGA
ATGTGCATATCAAGAAATGATCACTCACCTTCCACTTTGTTCAATTCCAA
ACCCGAAGAAGGTTCTGGTAATTGGTGGAGGAGATGGTGGGGTCTTGCGG
GAAGTATCTCGTCATTCTTCTGTTGAGAAGATTGATATCTGTGAAATTGA
TAAAATGGTAGTTGATGTCTCTAAACATTTTTCCCTGATG
back to top