FC921486

Overview
NameFC921486
Unique NameFC921486
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14320 contig Ccv1_Contig14320:1..690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_YERP3 (Spermidine synthase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=speE PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.824e-19
Identity = 44/100 (44.00%), Postives = 70/100 (70.00%), Query Frame = 1
Query:  382 VEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            VE +L++ K+++Q++ +F++   G+V+ LDGV+Q TERDE  Y EM+TH+PL +    KKVL+I      +LREVSRH ++E+I + EID  VV+  + +
Sbjct:   21 VENVLYREKTEHQDLVIFENPELGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGQAKKVLIIGGGDGAMLREVSRHKNIEQITMVEIDAGVVEFCRQY 120          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_ENT38 (Spermidine synthase OS=Enterobacter sp. (strain 638) GN=speE PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.824e-19
Identity = 44/100 (44.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:  382 VEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            V+ +L+  K+D+Q++ +F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K VL+I      +LREVSRH S+E I + EID  VV   + +
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVSRHKSIETITMVEIDAGVVSFCRQY 120          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_CLOK5 (Spermidine synthase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=speE PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.824e-19
Identity = 43/105 (40.95%), Postives = 69/105 (65.71%), Query Frame = 1
Query:  367 AHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            A + K+++ L   K+ YQ + +  +   G++L+LDG++Q T +DE  Y EMITH+PL + PNP+KVL++       +REV +H +VEK+ +CEID+ VV   K +
Sbjct:   14 AMTYKIKETLVTKKTKYQELAIVDTYALGRMLVLDGIVQTTVKDEYVYHEMITHIPLFTHPNPQKVLIVGGGDGGTVREVLKHETVEKVVLCEIDEQVVYECKKY 118          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_CLOK1 (Spermidine synthase OS=Clostridium kluyveri (strain NBRC 12016) GN=speE PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.824e-19
Identity = 43/105 (40.95%), Postives = 69/105 (65.71%), Query Frame = 1
Query:  367 AHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            A + K+++ L   K+ YQ + +  +   G++L+LDG++Q T +DE  Y EMITH+PL + PNP+KVL++       +REV +H +VEK+ +CEID+ VV   K +
Sbjct:   14 AMTYKIKETLVTKKTKYQELAIVDTYALGRMLVLDGIVQTTVKDEYVYHEMITHIPLFTHPNPQKVLIVGGGDGGTVREVLKHETVEKVVLCEIDEQVVYECKKY 118          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_CLOBB (Spermidine synthase OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=speE PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.688e-19
Identity = 45/116 (38.79%), Postives = 74/116 (63.79%), Query Frame = 1
Query:  352 MWPGEAH------SLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            +W  E H      S+KV++ L+  +S +Q + + +S  +GK   LDG++ +TE+DE  Y +MI H+P+ + PN K VLVI       +RE++R+ ++EKID+ EID+ VV+V K +
Sbjct:    3 LWYTEKHTEYVKFSIKVDRELYTEQSKFQRIDILESKEFGKFFTLDGLMMVTEKDEFIYHDMIVHVPMATNPNIKNVLVIGAGDGGTIRELTRYKTIEKIDMVEIDERVVEVCKKY 118          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_MOOTA (Spermidine synthase OS=Moorella thermoacetica (strain ATCC 39073) GN=speE PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.817e-19
Identity = 47/117 (40.17%), Postives = 72/117 (61.54%), Query Frame = 1
Query:  331 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            WFSE+    P  A S+++ + L   K+ YQ + V  +  YG++L+LD +IQ T +DE  Y EMI H+PL + PNP+  LVI      V+RE+ +H S+EK+ + EID  VV  ++ +
Sbjct:    5 WFSELQT--PDLAISVRLNQTLHHEKTPYQELAVVDTEAYGRMLLLDNIIQTTVKDEFFYHEMIAHVPLNTHPNPRTALVIGGGDGGVVREIVKHPSIEKVTLVEIDARVVANAREY 119          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_BUCAP (Spermidine synthase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=speE PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.817e-19
Identity = 41/100 (41.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:  382 VEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            ++KIL+Q K+ Y ++ +FQ+S  G+++ +DGV+Q TE+DE  Y EM+TH+P+      K VL++      +LRE+ RH S+E I + EID  ++D+ K F
Sbjct:   21 IDKILYQKKNKYHDIIIFQNSIMGRIMAIDGVVQTTEKDEFIYHEMLTHVPIFYHGLIKNVLIVGGGDGGILREICRHKSIENITMVEIDLNIIDLCKQF 120          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_EUBE2 (Spermidine synthase OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=speE PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.291e-19
Identity = 48/117 (41.03%), Postives = 71/117 (60.68%), Query Frame = 1
Query:  331 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            WFSE+    P     ++VEK LF G+SDYQ + VFQS  +GK L L+G +  +E+D   Y EM+ H+P+   P+ K VL+I      V +E+ ++ ++E IDI E D M VDV + +
Sbjct:    4 WFSELHS--PHVKFDIRVEKQLFSGESDYQRIDVFQSPEFGKFLTLNGSVIFSEQDCFIYNEMVVHVPMSVHPDVKNVLIIGGGDGGVSKELLQYDNIENIDIVEQDNMFVDVCREY 118          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_SILST (Spermidine synthase OS=Silicibacter sp. (strain TM1040) GN=speE PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.216e-19
Identity = 45/105 (42.86%), Postives = 69/105 (65.71%), Query Frame = 1
Query:  367 AHSLKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            A SL+V ++ +  K+++Q + VFQ+ T+G+VL LD V+Q TE D   Y EM+TH+P+ +    K+VL+I      + REV +H+SVE + + EID  VVD SK +
Sbjct:   16 AQSLRVSEMYYDSKTEHQRLKVFQNGTFGRVLTLDDVVQTTEGDNFIYHEMLTHVPILAHGAAKRVLIIGGGDGGIAREVLKHASVEHVTMVEIDAGVVDFSKEY 120          
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_SHIFL (Spermidine synthase OS=Shigella flexneri GN=speE PE=3 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 8.216e-19
Identity = 43/100 (43.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:  382 VEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            V+ +L+  K+D+Q++ +F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K VL+I      +LREV+RH +VE I + EID  VV   + +
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQY 120          
The following BLAST results are available for this feature:
BLAST of FC921486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 196
Match NameE-valueIdentityDescription
SPEE_YERP32.824e-1944.00Spermidine synthase OS=Yersinia pseudotuberculosis... [more]
SPEE_ENT382.824e-1944.00Spermidine synthase OS=Enterobacter sp. (strain 63... [more]
SPEE_CLOK52.824e-1940.95Spermidine synthase OS=Clostridium kluyveri (strai... [more]
SPEE_CLOK12.824e-1940.95Spermidine synthase OS=Clostridium kluyveri (strai... [more]
SPEE_CLOBB3.688e-1938.79Spermidine synthase OS=Clostridium botulinum (stra... [more]
SPEE_MOOTA4.817e-1940.17Spermidine synthase OS=Moorella thermoacetica (str... [more]
SPEE_BUCAP4.817e-1941.00Spermidine synthase OS=Buchnera aphidicola subsp. ... [more]
SPEE_EUBE26.291e-1941.03Spermidine synthase OS=Eubacterium eligens (strain... [more]
SPEE_SILST8.216e-1942.86Spermidine synthase OS=Silicibacter sp. (strain TM... [more]
SPEE_SHIFL8.216e-1943.00Spermidine synthase OS=Shigella flexneri GN=speE P... [more]

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Properties
Property NameValue
Genbank descriptionC32105E05EF RVDevelopN Citrus clementina cDNA clone C32105E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921486 ID=FC921486; Name=FC921486; organism=Citrus clementina; type=EST; length=690bp
GATTTTAATTTTTCTTTTTATATATAAAAGGCAAAGAGGGACGGAGATTC
TGTTTGTGTGGCGCCTCTTGACTCCCGAGAGTTGCCTCGGCAGTCAGTTT
TCATTAGAAGTGAAGTGATTGTTGGGTTTTCGGGGGTTTGAAAGCAGAAA
GAATAATCAATAATAATATCTGTTATGGCGGAAACTGGGTCTGCTGCTGC
CACTGATTTGCCGTTGAAGAGGCCGAGAGATGACGGAGAGAAGGAGGCTA
ATAACAACAATAACGGGAGTGTGTTGATGGAGATGGACTCTAACAAACAG
CCTGATTGTATCTCCTCTGTTATTCCTGGCTGGTTCTCTGAAATCAGCCC
AATGTGGCCCGGTGAGGCACATTCATTGAAGGTTGAGAAAATCTTGTTTC
AAGGGAAGTCTGATTACCAGAATGTCACGGTCTTTCAGTCTTCAACATAT
GGGAAGGTTCTTATTTTGGATGGGGTGATTCAGCTTACTGAGAGGGATGA
ATGTGCATATCAAGAAATGATCACTCACCTTCCACTTTGTTCAATTCCAA
ACCCGAAGAAGGTTCTGGTAATTGGTGGAGGAGATGGTGGGGTCTTGCGG
GAAGTATCTCGTCATTCTTCTGTTGAGAAGATTGATATCTGTGAAATTGA
TAAAATGGTAGTTGATGTCTCTAAACATTTTTCCCTGATG
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