FC921486

Overview
NameFC921486
Unique NameFC921486
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14320 contig Ccv1_Contig14320:1..690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_SHIF8 (Spermidine synthase OS=Shigella flexneri serotype 5b (strain 8401) GN=speE PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.216e-19
Identity = 43/100 (43.00%), Postives = 69/100 (69.00%), Query Frame = 1 
Query:  382 VEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            V+ +L+  K+D+Q++ +F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K VL+I      +LREV+RH +VE I + EID  VV   + +
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQY 120
[Close]
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_SHIDS (Spermidine synthase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=speE PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.216e-19
Identity = 43/100 (43.00%), Postives = 69/100 (69.00%), Query Frame = 1 
Query:  382 VEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            V+ +L+  K+D+Q++ +F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K VL+I      +LREV+RH +VE I + EID  VV   + +
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQY 120
[Close]
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_SHIBS (Spermidine synthase OS=Shigella boydii serotype 4 (strain Sb227) GN=speE PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.216e-19
Identity = 43/100 (43.00%), Postives = 69/100 (69.00%), Query Frame = 1 
Query:  382 VEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            V+ +L+  K+D+Q++ +F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K VL+I      +LREV+RH +VE I + EID  VV   + +
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQY 120
[Close]
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_SHIB3 (Spermidine synthase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=speE PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.216e-19
Identity = 43/100 (43.00%), Postives = 69/100 (69.00%), Query Frame = 1 
Query:  382 VEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            V+ +L+  K+D+Q++ +F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K VL+I      +LREV+RH +VE I + EID  VV   + +
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQY 120
[Close]
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_SALTY (Spermidine synthase OS=Salmonella typhimurium GN=speE PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.216e-19
Identity = 46/115 (40.00%), Postives = 72/115 (62.61%), Query Frame = 1 
Query:  352 MWPGEAHS-----LKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            MW    H        V+ +L+  K+D+Q++ +F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K VL+I      +LREV+RH +VE I + EID  VV   + +
Sbjct:    6 MWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVEIDAGVVSFCRQY 120
[Close]
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_SALTI (Spermidine synthase OS=Salmonella typhi GN=speE PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.216e-19
Identity = 46/115 (40.00%), Postives = 72/115 (62.61%), Query Frame = 1 
Query:  352 MWPGEAHS-----LKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            MW    H        V+ +L+  K+D+Q++ +F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K VL+I      +LREV+RH +VE I + EID  VV   + +
Sbjct:    6 MWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVEIDAGVVSFCRQY 120
[Close]
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_SALSV (Spermidine synthase OS=Salmonella schwarzengrund (strain CVM19633) GN=speE PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.216e-19
Identity = 46/115 (40.00%), Postives = 72/115 (62.61%), Query Frame = 1 
Query:  352 MWPGEAHS-----LKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            MW    H        V+ +L+  K+D+Q++ +F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K VL+I      +LREV+RH +VE I + EID  VV   + +
Sbjct:    6 MWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVEIDAGVVSFCRQY 120
[Close]
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_SALPK (Spermidine synthase OS=Salmonella paratyphi A (strain AKU_12601) GN=speE PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.216e-19
Identity = 46/115 (40.00%), Postives = 72/115 (62.61%), Query Frame = 1 
Query:  352 MWPGEAHS-----LKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            MW    H        V+ +L+  K+D+Q++ +F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K VL+I      +LREV+RH +VE I + EID  VV   + +
Sbjct:    6 MWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVEIDAGVVSFCRQY 120
[Close]
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_SALPC (Spermidine synthase OS=Salmonella paratyphi C (strain RKS4594) GN=speE PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.216e-19
Identity = 46/115 (40.00%), Postives = 72/115 (62.61%), Query Frame = 1 
Query:  352 MWPGEAHS-----LKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            MW    H        V+ +L+  K+D+Q++ +F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K VL+I      +LREV+RH +VE I + EID  VV   + +
Sbjct:    6 MWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVEIDAGVVSFCRQY 120
[Close]
BLAST of FC921486 vs. ExPASy Swiss-Prot
Match: SPEE_SALPB (Spermidine synthase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=speE PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.216e-19
Identity = 46/115 (40.00%), Postives = 72/115 (62.61%), Query Frame = 1 
Query:  352 MWPGEAHS-----LKVEKILFQGKSDYQNVTVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKHF 681
            MW    H        V+ +L+  K+D+Q++ +F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K VL+I      +LREV+RH +VE I + EID  VV   + +
Sbjct:    6 MWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVEIDAGVVSFCRQY 120
The following BLAST results are available for this feature:
BLAST of FC921486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 196
Match NameE-valueIdentityDescription
SPEE_SHIF88.216e-1943.00Spermidine synthase OS=Shigella flexneri serotype ... [more]
SPEE_SHIDS8.216e-1943.00Spermidine synthase OS=Shigella dysenteriae seroty... [more]
SPEE_SHIBS8.216e-1943.00Spermidine synthase OS=Shigella boydii serotype 4 ... [more]
SPEE_SHIB38.216e-1943.00Spermidine synthase OS=Shigella boydii serotype 18... [more]
SPEE_SALTY8.216e-1940.00Spermidine synthase OS=Salmonella typhimurium GN=s... [more]
SPEE_SALTI8.216e-1940.00Spermidine synthase OS=Salmonella typhi GN=speE PE... [more]
SPEE_SALSV8.216e-1940.00Spermidine synthase OS=Salmonella schwarzengrund (... [more]
SPEE_SALPK8.216e-1940.00Spermidine synthase OS=Salmonella paratyphi A (str... [more]
SPEE_SALPC8.216e-1940.00Spermidine synthase OS=Salmonella paratyphi C (str... [more]
SPEE_SALPB8.216e-1940.00Spermidine synthase OS=Salmonella paratyphi B (str... [more]

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Properties
Property NameValue
Genbank descriptionC32105E05EF RVDevelopN Citrus clementina cDNA clone C32105E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921486 ID=FC921486; Name=FC921486; organism=Citrus clementina; type=EST; length=690bp
GATTTTAATTTTTCTTTTTATATATAAAAGGCAAAGAGGGACGGAGATTC
TGTTTGTGTGGCGCCTCTTGACTCCCGAGAGTTGCCTCGGCAGTCAGTTT
TCATTAGAAGTGAAGTGATTGTTGGGTTTTCGGGGGTTTGAAAGCAGAAA
GAATAATCAATAATAATATCTGTTATGGCGGAAACTGGGTCTGCTGCTGC
CACTGATTTGCCGTTGAAGAGGCCGAGAGATGACGGAGAGAAGGAGGCTA
ATAACAACAATAACGGGAGTGTGTTGATGGAGATGGACTCTAACAAACAG
CCTGATTGTATCTCCTCTGTTATTCCTGGCTGGTTCTCTGAAATCAGCCC
AATGTGGCCCGGTGAGGCACATTCATTGAAGGTTGAGAAAATCTTGTTTC
AAGGGAAGTCTGATTACCAGAATGTCACGGTCTTTCAGTCTTCAACATAT
GGGAAGGTTCTTATTTTGGATGGGGTGATTCAGCTTACTGAGAGGGATGA
ATGTGCATATCAAGAAATGATCACTCACCTTCCACTTTGTTCAATTCCAA
ACCCGAAGAAGGTTCTGGTAATTGGTGGAGGAGATGGTGGGGTCTTGCGG
GAAGTATCTCGTCATTCTTCTGTTGAGAAGATTGATATCTGTGAAATTGA
TAAAATGGTAGTTGATGTCTCTAAACATTTTTCCCTGATG
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