FC921491

Overview
NameFC921491
Unique NameFC921491
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921491 vs. ExPASy Swiss-Prot
Match: RIR2B_HUMAN (Ribonucleoside-diphosphate reductase subunit M2 B OS=Homo sapiens GN=RRM2B PE=1 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 1.407e-79
Identity = 142/200 (71.00%), Postives = 165/200 (82.50%), Query Frame = 3
Query:   84 EEPLLAPNPDRFCMFPIRYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWI-DGSETFAERLIAFACVERIFFSGSFCAIFWLKKRGLMPRITFSNELISRDEGL 680
            EEPLL  +  RF +FPI+YP IW+MYK+A+ASFWTAEEVDLS+DL HW  L ADEK+F++H+LAFFAASDGIV ENL  RF  EVQV EAR FYGFQI IEN+HSEMYSLL++TYI+D  ++  LF+AIET+P V KKA WAL WI D   TF ER++AFA VE +FFSGSF AIFWLKKRGLMP +TFSNELISRDEGL
Sbjct:   31 EEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGL 230          

HSP 2 Score: 25.7942 bits (55), Expect = 1.407e-79
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 2
Query:  674 GSHCDFACLLY 706
            G HCDFACL++
Sbjct:  229 GLHCDFACLMF 239          
BLAST of FC921491 vs. ExPASy Swiss-Prot
Match: RIR2B_MOUSE (Ribonucleoside-diphosphate reductase subunit M2 B OS=Mus musculus GN=Rrm2b PE=1 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 3.122e-79
Identity = 142/200 (71.00%), Postives = 164/200 (82.00%), Query Frame = 3
Query:   84 EEPLLAPNPDRFCMFPIRYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWI-DGSETFAERLIAFACVERIFFSGSFCAIFWLKKRGLMPRITFSNELISRDEGL 680
            EEPLL  +  RF +FPI+YP IW MYK+A+ASFWTAEEVDLS+DL HW  L +DEK+F++H+LAFFAASDGIV ENL  RF  EVQV EAR FYGFQI IEN+HSEMYSLL++TYI+D  ++  LF+AIET+P V KKA WAL WI D   TF ER++AFA VE IFFSGSF AIFWLKKRGLMP +TFSNELISRDEGL
Sbjct:   31 EEPLLRKSSRRFVIFPIQYPDIWRMYKQAQASFWTAEEVDLSKDLPHWNKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGL 230          

HSP 2 Score: 25.7942 bits (55), Expect = 3.122e-79
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 2
Query:  674 GSHCDFACLLY 706
            G HCDFACL++
Sbjct:  229 GLHCDFACLMF 239          
BLAST of FC921491 vs. ExPASy Swiss-Prot
Match: RIR2_NEUCR (Ribonucleoside-diphosphate reductase small chain OS=Neurospora crassa GN=rnr-2 PE=3 SV=2)

HSP 1 Score: 290.812 bits (743), Expect = 1.177e-78
Identity = 142/210 (67.62%), Postives = 167/210 (79.52%), Query Frame = 3
Query:   57 ALTKMPSIPEEPLLAPNPDRFCMFPIRYPQIWEMYKKAEASFWTAEEVDLSQDLRHWE-ALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWI-DGSETFAERLIAFACVERIFFSGSFCAIFWLKKRGLMPRITFSNELISRDEGL 680
            A T  P    EPLL  NP RF +FPI+Y +IW+MYKKAEASFWTAEE+DLS+DL  W   L  DEK F++H+LAFFAASDGIV ENL  RF  EVQ+ EAR FYGFQI +ENIHSE YSLL++TYIK+  ++  LF+AI+T+PC+ KKA WAL WI D S TFA+RL+AFA VE IFFSG+F +IFWLKKRGLMP +TFSNELISRDEGL
Sbjct:   67 APTLKPEEANEPLLTENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNNRLNDDEKFFISHILAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETYSLLIDTYIKEPSQRTYLFNAIDTIPCIRKKADWALRWITDKSSTFAQRLVAFAAVEGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGL 276          

HSP 2 Score: 24.2534 bits (51), Expect = 1.177e-78
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 2
Query:  674 GSHCDFACLLYS 709
            G H DFACLL+S
Sbjct:  275 GLHTDFACLLFS 286          
BLAST of FC921491 vs. ExPASy Swiss-Prot
Match: RIR2_DROME (Ribonucleoside-diphosphate reductase subunit M2 OS=Drosophila melanogaster GN=RnrS PE=1 SV=2)

HSP 1 Score: 290.426 bits (742), Expect = 6.288e-78
Identity = 146/227 (64.32%), Postives = 174/227 (76.65%), Query Frame = 3
Query:    3 SSSTKEIEKNISLFSQISALTKMPSIPEEPLLAPNPDRFCMFPIRYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDG-SETFAERLIAFACVERIFFSGSFCAIFWLKKRGLMPRITFSNELISRDEGL 680
            SS+   I K+ +   + S     PS+  EPLL  NP RF +FPI+Y  IW+MYKKAEASFWT EEVDLS+DL  W  L  DE+HF++HVLAFFAASDGIV ENL  RF  EVQ+ EAR FYGFQIA+EN+HSEMYS+L++TYI+D  ++  LF+AIET+P V +KA WAL+WI   S  F ER+IAFA VE IFFSGSF +IFWLKKRGLMP +TFSNELISRDEGL
Sbjct:   48 SSTVNGIGKSANSLMEKSVTPFDPSL--EPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWHRLKDDERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENVHSEMYSVLIDTYIRDPHQREYLFNAIETMPAVKRKADWALSWISSKSANFGERIIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 272          
BLAST of FC921491 vs. ExPASy Swiss-Prot
Match: RIR2_SWPVK (Ribonucleoside-diphosphate reductase small chain OS=Swinepox virus (strain Kasza) GN=C14L PE=3 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 2.397e-76
Identity = 132/198 (66.67%), Postives = 162/198 (81.82%), Query Frame = 3
Query:   87 EPLLAPNPDRFCMFPIRYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVERIFFSGSFCAIFWLKKRGLMPRITFSNELISRDEGL 680
            EP+L  +  RF +FPI+Y  IW+MYK++ ASFWT EEVDLS+DL  W+ LT DEK+F+ H+LAFFA+SDGIV ENLA RF  +VQ +EAR FYGFQIA+ENIHSEMYSLL++TY++D+ EK  LF+AIET+ CV KKA WA  WI  ++ + ER++AFA VE IFFSGSF AIFW+KKRGLMP +TFSNELISRDEGL
Sbjct:    2 EPILQESDSRFVIFPIKYHDIWKMYKQSVASFWTVEEVDLSKDLDDWDKLTKDEKYFIKHILAFFASSDGIVNENLAERFYVDVQCSEARCFYGFQIAMENIHSEMYSLLIDTYVRDNIEKMHLFNAIETMECVKKKADWARKWISSNKVYGERVVAFAAVEGIFFSGSFAAIFWIKKRGLMPGLTFSNELISRDEGL 199          

HSP 2 Score: 25.7942 bits (55), Expect = 2.397e-76
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 2
Query:  674 GSHCDFACLLY 706
            G HCDFACL++
Sbjct:  198 GLHCDFACLMF 208          
BLAST of FC921491 vs. ExPASy Swiss-Prot
Match: RIR2_LEIAM (Ribonucleoside-diphosphate reductase small subunit OS=Leishmania amazonensis PE=3 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 4.070e-76
Identity = 130/199 (65.33%), Postives = 157/199 (78.89%), Query Frame = 3
Query:   84 EEPLLAPNPDRFCMFPIRYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVERIFFSGSFCAIFWLKKRGLMPRITFSNELISRDEGL 680
            EEPL   NP R+ +FPI+Y  IW  YK+ E+  WT EE+DL  D++ W  L   E+HF+ HVLAFFA SDGIV+ENLA RFM++V+V EARAFYGFQ+ +ENIHSE YS+LL+TYI DS+EK RL HAI+T+PC+ KKA W + WI  S +F +RLI FA VE IFFSGSFCA+FWLKKRGLMP +TFSNELISRDEGL
Sbjct:   24 EEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEIDLGNDMKDWATLNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAFYGFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWPVRWIGSSASFQQRLIGFAAVEGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGL 222          

HSP 2 Score: 24.6386 bits (52), Expect = 4.070e-76
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 2
Query:  674 GSHCDFACLLYS 709
            G H DFACLLY+
Sbjct:  221 GLHTDFACLLYN 232          
BLAST of FC921491 vs. ExPASy Swiss-Prot
Match: RIR2_YLDV (Ribonucleoside-diphosphate reductase small chain OS=Yaba-like disease virus GN=20L PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 4.446e-75
Identity = 135/199 (67.84%), Postives = 162/199 (81.41%), Query Frame = 3
Query:   87 EPLLAPNPDRFCMFPIRYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDG-SETFAERLIAFACVERIFFSGSFCAIFWLKKRGLMPRITFSNELISRDEGL 680
            EP+L P  +++ +FPI Y  IW+MYKKA ASFWT EEVDLS+D   W  L+ +EK+F+ H+LAFFAASDGIV ENLA RF +EVQ++EAR FYGFQIA+ENIHSEMYSLL++TYI DS EKN LF+AIE + CV +KA WA  WI+  + T+ ERL+AFA VE IFFSGSF AIFW+KKRGLMP +TFSNELISRDEGL
Sbjct:    6 EPILKPTLNKYVVFPIVYEDIWKMYKKAVASFWTVEEVDLSKDFSDWLKLSDNEKNFIKHILAFFAASDGIVNENLAERFYSEVQISEARCFYGFQIAMENIHSEMYSLLIDTYILDSKEKNYLFNAIENMNCVKQKANWAKKWIESKNRTYGERLVAFAAVEGIFFSGSFAAIFWIKKRGLMPGLTFSNELISRDEGL 204          

HSP 2 Score: 25.0238 bits (53), Expect = 4.446e-75
Identity = 7/11 (63.64%), Postives = 10/11 (90.91%), Query Frame = 2
Query:  674 GSHCDFACLLY 706
            G HCDFAC+++
Sbjct:  203 GLHCDFACIMF 213          
BLAST of FC921491 vs. ExPASy Swiss-Prot
Match: RIR2_ENCCU (Ribonucleoside-diphosphate reductase small chain OS=Encephalitozoon cuniculi GN=ECU06_0730 PE=3 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 2.188e-74
Identity = 135/199 (67.84%), Postives = 160/199 (80.40%), Query Frame = 3
Query:   87 EPLLAPNPDRFCMFPIRYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWI-DGSETFAERLIAFACVERIFFSGSFCAIFWLKKRGLMPRITFSNELISRDEGL 680
            E LL P  +RF + PI+Y  IW+MYKKAE+SFWT EEV L +D+  W  L A E+HF+++VLAFFAASDGIV  NL  RF TEV+V EAR FYGFQ+AIENIHSEMYSLL++TYI+D+DEKN LF AI T+P V +KA WA+ WI D +  FA RL+AFACVE IFFSG+F +IFWLKKRGLMP +TFSNELISRDEGL
Sbjct:    8 ELLLDPKEERFVLLPIKYHDIWKMYKKAESSFWTVEEVSLDKDIDDWGKLNAKERHFISYVLAFFAASDGIVNLNLVERFSTEVKVLEARFFYGFQMAIENIHSEMYSLLIDTYIRDNDEKNFLFDAIRTIPSVKEKADWAIRWIEDKNSDFATRLVAFACVEGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGL 206          

HSP 2 Score: 24.6386 bits (52), Expect = 2.188e-74
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 2
Query:  674 GSHCDFACLLY 706
            G HC+FACLL+
Sbjct:  205 GLHCEFACLLH 215          
BLAST of FC921491 vs. ExPASy Swiss-Prot
Match: RIR2_PLAF4 (Ribonucleoside-diphosphate reductase small chain OS=Plasmodium falciparum (isolate Dd2) GN=RNR2 PE=2 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 6.327e-74
Identity = 128/198 (64.65%), Postives = 155/198 (78.28%), Query Frame = 3
Query:   87 EPLLAPNPDRFCMFPIRYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVERIFFSGSFCAIFWLKKRGLMPRITFSNELISRDEGL 680
            E +L    DRF ++PI YP +W+ YKKAEASFWTAEE+DLS DL+ +E L  +EKHF+ HVLAFFAASDGIVLENLA +F+ EVQ+ EA+ FY FQIA+ENIHSE YSLL++ YIKD  E+  LFHAIE +P V  KA WA  WI+ + +FAER++A ACVE I FSGSFCAIFW KK+  +  +TFSNELISRDEGL
Sbjct:   31 EKILNKESDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFEKLNENEKHFIKHVLAFFAASDGIVLENLASKFLREVQITEAKKFYSFQIAVENIHSETYSLLIDNYIKDEKERLNLFHAIENIPAVKNKALWAAKWINDTNSFAERIVANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGL 228          

HSP 2 Score: 24.2534 bits (51), Expect = 6.327e-74
Identity = 9/13 (69.23%), Postives = 10/13 (76.92%), Query Frame = 2
Query:  674 GSHCDFACLLYSL 712
            G H DF CL+YSL
Sbjct:  227 GLHTDFNCLIYSL 239          
BLAST of FC921491 vs. ExPASy Swiss-Prot
Match: RIR2_CAEEL (Ribonucleoside-diphosphate reductase small chain OS=Caenorhabditis elegans GN=rnr-2 PE=1 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 9.825e-72
Identity = 130/200 (65.00%), Postives = 156/200 (78.00%), Query Frame = 3
Query:   84 EEPLLAPNPDRFCMFPIRYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWI-DGSETFAERLIAFACVERIFFSGSFCAIFWLKKRGLMPRITFSNELISRDEGL 680
            +EP+L    +RF +FP+++  IW  YKKA ASFWT EEVDL +D+  WE +  DE++F++ +LAFFAASDGIV ENL  RF  EVQV+EAR FYGFQIAIENIHSEMYS L+ETYI+D  E+N LF+A++    + KKA WAL WI D   +FAERLIAFA VE IFFSGSF +IFWLKKRGLMP +T SNELISRDEGL
Sbjct:   61 DEPMLQDLDNRFVIFPLKHHDIWNFYKKAVASFWTVEEVDLGKDMNDWEKMNGDEQYFISRILAFFAASDGIVNENLCERFSNEVQVSEARFFYGFQIAIENIHSEMYSKLIETYIRDETERNTLFNAVDEFEFIKKKADWALRWISDKKASFAERLIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTHSNELISRDEGL 260          

HSP 2 Score: 25.0238 bits (53), Expect = 9.825e-72
Identity = 10/12 (83.33%), Postives = 10/12 (83.33%), Query Frame = 2
Query:  674 GSHCDFACLLYS 709
            G H DFACLLYS
Sbjct:  259 GLHRDFACLLYS 270          
The following BLAST results are available for this feature:
BLAST of FC921491 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
RIR2B_HUMAN1.407e-7971.00Ribonucleoside-diphosphate reductase subunit M2 B ... [more]
RIR2B_MOUSE3.122e-7971.00Ribonucleoside-diphosphate reductase subunit M2 B ... [more]
RIR2_NEUCR1.177e-7867.62Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_DROME6.288e-7864.32Ribonucleoside-diphosphate reductase subunit M2 OS... [more]
RIR2_SWPVK2.397e-7666.67Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_LEIAM4.070e-7665.33Ribonucleoside-diphosphate reductase small subunit... [more]
RIR2_YLDV4.446e-7567.84Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_ENCCU2.188e-7467.84Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_PLAF46.327e-7464.65Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_CAEEL9.825e-7265.00Ribonucleoside-diphosphate reductase small chain O... [more]

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Properties
Property NameValue
Genbank descriptionC32105E12EF RVDevelopN Citrus clementina cDNA clone C32105E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921491 ID=FC921491; Name=FC921491; organism=Citrus clementina; type=EST; length=712bp
GGTCCTCATCAACCAAAGAAATAGAAAAAAATATCTCTCTATTCTCCCAA
ATTAGTGCGCTTACCAAAATGCCCTCGATTCCTGAAGAGCCGCTTCTAGC
CCCAAATCCCGATCGATTTTGCATGTTCCCGATTCGGTACCCACAAATTT
GGGAAATGTACAAGAAAGCCGAAGCGTCGTTTTGGACCGCTGAGGAAGTT
GATCTTTCGCAAGATCTCCGCCACTGGGAGGCCCTAACCGCTGACGAGAA
GCACTTCGTCACGCACGTGCTCGCCTTCTTCGCAGCCTCCGACGGCATCG
TCCTCGAGAACCTCGCCGGAAGGTTCATGACGGAGGTCCAGGTCGCCGAG
GCGCGTGCCTTCTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGA
AATGTACTCGCTGCTTCTAGAAACTTACATCAAAGACTCCGACGAAAAGA
ACCGTCTCTTTCACGCCATCGAGACGGTTCCCTGCGTCGCAAAGAAAGCC
ACGTGGGCGTTAAATTGGATCGACGGCTCGGAGACTTTCGCGGAGAGATT
AATCGCGTTTGCTTGCGTGGAGAGGATTTTCTTCTCAGGGAGTTTTTGCG
CGATATTTTGGCTCAAAAAGCGCGGGTTAATGCCNAGGATTACATTCTCA
AACGAGTTGATCTCTCGAGATGAGGGTCTCACTGCGATTTCGCGTGCCTG
TTGTACAGTTTA
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