FC921495

Overview
NameFC921495
Unique NameFC921495
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC921495 vs. ExPASy Swiss-Prot
Match: NIT3_YEAST (Probable hydrolase NIT3 OS=Saccharomyces cerevisiae GN=NIT3 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.030e-13
Identity = 41/81 (50.62%), Postives = 52/81 (64.20%), Query Frame = 1 
Query:  451 LPEIWNSPYSNDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSG--DRLYNTCCVFGSDGKLIAKHRKIH 687
            LPE +NSPYS D F  Y+E I+   + S S   LS +A   KI +VGG+IPE     D++YNT  +F  DGKLI KHRK+H
Sbjct:   51 LPECFNSPYSTDQFRKYSEVINPK-EPSTSVQFLSNLANKFKIILVGGTIPELDPKTDKIYNTSIIFNEDGKLIDKHRKVH 130
[Close]
BLAST of FC921495 vs. ExPASy Swiss-Prot
Match: NIT2_DICDI (Nitrilase homolog 2 OS=Dictyostelium discoideum GN=nit2 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.645e-11
Identity = 36/81 (44.44%), Postives = 51/81 (62.96%), Query Frame = 1 
Query:  451 LPEIWNSPYSNDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPE--RSGDRLYNTCCVFGSDGKLIAKHRKIH 687
            LPE +NSPYS  +F  Y+E  D       +   LSE A+  +I +VGGSIPE  ++  ++YNTC +F   G+++ KHRKIH
Sbjct:   90 LPECFNSPYSTSTFEKYSETEDG-----ETVKKLSEAAKRNQIFLVGGSIPEIDKATGKIYNTCFIFNDKGEVVKKHRKIH 165
The following BLAST results are available for this feature:
BLAST of FC921495 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
NIT3_YEAST1.030e-1350.62Probable hydrolase NIT3 OS=Saccharomyces cerevisia... [more]
NIT2_DICDI1.645e-1144.44Nitrilase homolog 2 OS=Dictyostelium discoideum GN... [more]

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Properties
Property NameValue
Genbank descriptionC32105F04EF RVDevelopN Citrus clementina cDNA clone C32105F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921495 ID=FC921495; Name=FC921495; organism=Citrus clementina; type=EST; length=687bp
GGCTCGTGAAATGGATCAAAAACGAGTGTTCTGATGCCGTGGAATTGAGC
TTTGAATAGAGTAAAAAATAACAGGGAAGAAAGTGAAATGAAGTCAGCAG
TAGCAATCACTTCTAAGATTCATCTAAATCTCAATCTCAATCTCAGACGC
AATCACTTGTACTCCCCTCTCTCTCGTTCCATATTTCGAGGAAAGGCTAA
ACCCGTCTTCCAATCTCCTCCTCTCATCCGCACACACTCGTCAAATCCAA
ATCCAAATCCAATCATGGCTTCCTCTTTCAAGCCCGAACAAGCCAGGGCC
CCACCCGCCCTTCCCTTGCCCACTCCCCCCGTCACCAAGTTTAAGGTTGG
GCTTTGCCAATTGTCAGTAACGGCTGACAAAGAAAGGAACATCGCTCATG
CTCGTAGAGCCATTGAGGAGGCGGCTGAGAAAGGCGCCAAGCTCATTATT
TTGCCTGAGATTTGGAACAGTCCCTATTCGAATGACAGCTTCCCAGTTTA
TGCCGAAGACATTGATGCTGGTGGTGATGCATCTCCTTCCACCGCCATGC
TTTCTGAAGTTGCTCGTCTTCTGAAGATCACTATAGTTGGCGGCTCTATT
CCCGAACGTTCTGGGGATCGATTGTACAATACTTGCTGCGTCTTTGGTTC
TGATGGAAAACTGATAGCTAAGCACCGGAAGATACAC
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