FC921511

Overview
NameFC921511
Unique NameFC921511
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921511 vs. ExPASy Swiss-Prot
Match: ARF1_SCHPO (ADP-ribosylation factor 1 OS=Schizosaccharomyces pombe GN=arf1 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 3.655e-22
Identity = 47/69 (68.12%), Postives = 60/69 (86.96%), Query Frame = 2
Query:  224 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLG 430
            MG+  ++LF SLFG +E RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+G
Sbjct:    1 MGLSISKLFQSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRNISFTVWDVG 69          
BLAST of FC921511 vs. ExPASy Swiss-Prot
Match: ARF_NEUCR (ADP-ribosylation factor OS=Neurospora crassa GN=NCU08340 PE=3 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 4.774e-22
Identity = 49/72 (68.06%), Postives = 61/72 (84.72%), Query Frame = 2
Query:  215 IGNMGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLG 430
            +GN   +F +LF  LFG KE RIL++GLD AGKTTILY+L++GEVV+TIPTIGFNVETV+Y NI+F VWD+G
Sbjct:    1 MGNTLSIFGKLFDGLFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNIQFTVWDVG 72          
BLAST of FC921511 vs. ExPASy Swiss-Prot
Match: ARF1_RAT (ADP-ribosylation factor 1 OS=Rattus norvegicus GN=Arf1 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.774e-22
Identity = 48/69 (69.57%), Postives = 58/69 (84.06%), Query Frame = 2
Query:  224 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLG 430
            MG +F  LF  LFG KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+G
Sbjct:    1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 69          
BLAST of FC921511 vs. ExPASy Swiss-Prot
Match: ARF1_MOUSE (ADP-ribosylation factor 1 OS=Mus musculus GN=Arf1 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.774e-22
Identity = 48/69 (69.57%), Postives = 58/69 (84.06%), Query Frame = 2
Query:  224 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLG 430
            MG +F  LF  LFG KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+G
Sbjct:    1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 69          
BLAST of FC921511 vs. ExPASy Swiss-Prot
Match: ARF1_MACFA (ADP-ribosylation factor 1 OS=Macaca fascicularis GN=ARF1 PE=2 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 4.774e-22
Identity = 48/69 (69.57%), Postives = 58/69 (84.06%), Query Frame = 2
Query:  224 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLG 430
            MG +F  LF  LFG KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+G
Sbjct:    1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 69          
BLAST of FC921511 vs. ExPASy Swiss-Prot
Match: ARF1_LOCMI (ADP-ribosylation factor 1 OS=Locusta migratoria GN=ARF1 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.774e-22
Identity = 48/69 (69.57%), Postives = 58/69 (84.06%), Query Frame = 2
Query:  224 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLG 430
            MG +F  LF  LFG KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+G
Sbjct:    1 MGNVFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 69          
BLAST of FC921511 vs. ExPASy Swiss-Prot
Match: ARF1_HUMAN (ADP-ribosylation factor 1 OS=Homo sapiens GN=ARF1 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.774e-22
Identity = 48/69 (69.57%), Postives = 58/69 (84.06%), Query Frame = 2
Query:  224 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLG 430
            MG +F  LF  LFG KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+G
Sbjct:    1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 69          
BLAST of FC921511 vs. ExPASy Swiss-Prot
Match: ARF1_DROME (ADP-ribosylation factor 1 OS=Drosophila melanogaster GN=Arf79F PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.774e-22
Identity = 48/69 (69.57%), Postives = 58/69 (84.06%), Query Frame = 2
Query:  224 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLG 430
            MG +F  LF  LFG KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+G
Sbjct:    1 MGNVFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 69          
BLAST of FC921511 vs. ExPASy Swiss-Prot
Match: ARF1_BOVIN (ADP-ribosylation factor 1 OS=Bos taurus GN=ARF1 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.774e-22
Identity = 48/69 (69.57%), Postives = 58/69 (84.06%), Query Frame = 2
Query:  224 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLG 430
            MG +F  LF  LFG KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+G
Sbjct:    1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 69          
BLAST of FC921511 vs. ExPASy Swiss-Prot
Match: ARF1_ARATH (ADP-ribosylation factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.774e-22
Identity = 48/69 (69.57%), Postives = 59/69 (85.51%), Query Frame = 2
Query:  224 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLG 430
            MG+ F +LFS LF  KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+G
Sbjct:    1 MGLSFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 69          
The following BLAST results are available for this feature:
BLAST of FC921511 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
ARF1_SCHPO3.655e-2268.12ADP-ribosylation factor 1 OS=Schizosaccharomyces p... [more]
ARF_NEUCR4.774e-2268.06ADP-ribosylation factor OS=Neurospora crassa GN=NC... [more]
ARF1_RAT4.774e-2269.57ADP-ribosylation factor 1 OS=Rattus norvegicus GN=... [more]
ARF1_MOUSE4.774e-2269.57ADP-ribosylation factor 1 OS=Mus musculus GN=Arf1 ... [more]
ARF1_MACFA4.774e-2269.57ADP-ribosylation factor 1 OS=Macaca fascicularis G... [more]
ARF1_LOCMI4.774e-2269.57ADP-ribosylation factor 1 OS=Locusta migratoria GN... [more]
ARF1_HUMAN4.774e-2269.57ADP-ribosylation factor 1 OS=Homo sapiens GN=ARF1 ... [more]
ARF1_DROME4.774e-2269.57ADP-ribosylation factor 1 OS=Drosophila melanogast... [more]
ARF1_BOVIN4.774e-2269.57ADP-ribosylation factor 1 OS=Bos taurus GN=ARF1 PE... [more]
ARF1_ARATH4.774e-2269.57ADP-ribosylation factor 1 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionC32105G09EF RVDevelopN Citrus clementina cDNA clone C32105G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921511 ID=FC921511; Name=FC921511; organism=Citrus clementina; type=EST; length=702bp
GAGAACAGTTTTGTAATAACAACAATTAAACAAACCCCCCAAAACTTTCA
TCTTTTTTATTTTTTCATAACTCAAAAGTCTCAACAAATCTCGCAAGCAG
ACCCTCTTCCTTTTTTTCCAGGGAGGAACAGGGGACTCTGCTTTGCAGAT
CCAATACATAATTCAATCACAAAAAAAGCTTCAATTTTTCCGATCGGATC
ACTAAGAATACAAAATCGGAAACATGGGTATTATGTTTACGCGATTGTTC
TCTTCGCTCTTTGGCAACAAAGAGGCTAGGATTCTAGTTCTTGGCCTTGA
CAATGCTGGCAAAACTACGATTCTCTATCGGCTTCAAATGGGTGAAGTTG
TGTCAACTATTCCAACTATTGGATTTAATGTGGAGACAGTACAATATAAT
AACATCAAATTCCAAGTCTGGGATCTTGGTATGTCAGTATGCTTCCTTTG
ATCAGTATTTGCAACCTGCATTATCGACTTTTTGTTAAATTGATATCAAT
GTGGATTATTAACTGCATTTCTCTCCTTGGAACCATACGTTGTTTTACTC
TTGCTAATCTGCAATAAGAATCATGCTCATCTATGCATTTGCACCTGCAC
GACACTTGTGGACGGTATGATGCGAGTCCCACATGTGTTGATGACTAGAT
CTATGCAATTCAAGCAATGTATCATCTGAAGAAAGGTCTGATNCTGCCCT
AT
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