FC921511

Overview
NameFC921511
Unique NameFC921511
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921511 vs. ExPASy Swiss-Prot
Match: ARL1_YEAST (ADP-ribosylation factor-like protein 1 OS=Saccharomyces cerevisiae GN=ARL1 PE=1 SV=4)

HSP 1 Score: 100.908 bits (250), Expect = 6.894e-21
Identity = 49/70 (70.00%), Postives = 58/70 (82.86%), Query Frame = 2
Query:  224 MGIMFTRLFSSLFG-NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLG 430
            MG +F+ +F  L+G NKE RIL+LGLD AGKTTILYRLQ+GEVV+T PTIGFNVET+ Y N+K  VWDLG
Sbjct:    1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLG 70          
BLAST of FC921511 vs. ExPASy Swiss-Prot
Match: ARF3_TAKRU (ADP-ribosylation factor 3 OS=Takifugu rubripes GN=arf3 PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 6.894e-21
Identity = 47/69 (68.12%), Postives = 57/69 (82.61%), Query Frame = 2
Query:  224 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLG 430
            MG +F  L  SL G KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+G
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 69          
BLAST of FC921511 vs. ExPASy Swiss-Prot
Match: ARF3_RAT (ADP-ribosylation factor 3 OS=Rattus norvegicus GN=Arf3 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 6.894e-21
Identity = 47/69 (68.12%), Postives = 57/69 (82.61%), Query Frame = 2
Query:  224 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLG 430
            MG +F  L  SL G KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+G
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 69          
BLAST of FC921511 vs. ExPASy Swiss-Prot
Match: ARF3_PONAB (ADP-ribosylation factor 3 OS=Pongo abelii GN=ARF3 PE=2 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 6.894e-21
Identity = 47/69 (68.12%), Postives = 57/69 (82.61%), Query Frame = 2
Query:  224 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLG 430
            MG +F  L  SL G KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+G
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 69          
BLAST of FC921511 vs. ExPASy Swiss-Prot
Match: ARF3_MOUSE (ADP-ribosylation factor 3 OS=Mus musculus GN=Arf3 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 6.894e-21
Identity = 47/69 (68.12%), Postives = 57/69 (82.61%), Query Frame = 2
Query:  224 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLG 430
            MG +F  L  SL G KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+G
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 69          
BLAST of FC921511 vs. ExPASy Swiss-Prot
Match: ARF3_HUMAN (ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 6.894e-21
Identity = 47/69 (68.12%), Postives = 57/69 (82.61%), Query Frame = 2
Query:  224 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLG 430
            MG +F  L  SL G KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+G
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 69          
BLAST of FC921511 vs. ExPASy Swiss-Prot
Match: ARF3_BOVIN (ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE=2 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 6.894e-21
Identity = 47/69 (68.12%), Postives = 57/69 (82.61%), Query Frame = 2
Query:  224 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLG 430
            MG +F  L  SL G KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+G
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 69          
BLAST of FC921511 vs. ExPASy Swiss-Prot
Match: ARL1_DROME (ADP-ribosylation factor-like protein 1 OS=Drosophila melanogaster GN=Arf72A PE=1 SV=5)

HSP 1 Score: 100.523 bits (249), Expect = 9.003e-21
Identity = 47/61 (77.05%), Postives = 53/61 (86.89%), Query Frame = 2
Query:  248 FSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLG 430
            F  L G++E RIL+LGLD AGKTTILYRLQ+GEVV+TIPTIGFNVE V Y N+KFQVWDLG
Sbjct:    8 FRGLLGSREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVEQVTYKNLKFQVWDLG 68          
BLAST of FC921511 vs. ExPASy Swiss-Prot
Match: ARF5_CHICK (ADP-ribosylation factor 5 OS=Gallus gallus GN=ARF5 PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 9.003e-21
Identity = 45/69 (65.22%), Postives = 59/69 (85.51%), Query Frame = 2
Query:  224 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLG 430
            MG+  + +FS +FG K+ RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+G
Sbjct:    1 MGLTVSAIFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVG 69          
BLAST of FC921511 vs. ExPASy Swiss-Prot
Match: ARF1_PLAFO (ADP-ribosylation factor 1 OS=Plasmodium falciparum (isolate NF54) GN=ARF1 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.006e-20
Identity = 45/69 (65.22%), Postives = 59/69 (85.51%), Query Frame = 2
Query:  224 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLG 430
            MG+  +RLF+ LF  K+ RIL++GLD AGKTTILY++++GEVV+TIPTIGFNVETV++ NI F VWD+G
Sbjct:    1 MGLYVSRLFNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNVETVEFRNISFTVWDVG 69          
The following BLAST results are available for this feature:
BLAST of FC921511 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
ARL1_YEAST6.894e-2170.00ADP-ribosylation factor-like protein 1 OS=Saccharo... [more]
ARF3_TAKRU6.894e-2168.12ADP-ribosylation factor 3 OS=Takifugu rubripes GN=... [more]
ARF3_RAT6.894e-2168.12ADP-ribosylation factor 3 OS=Rattus norvegicus GN=... [more]
ARF3_PONAB6.894e-2168.12ADP-ribosylation factor 3 OS=Pongo abelii GN=ARF3 ... [more]
ARF3_MOUSE6.894e-2168.12ADP-ribosylation factor 3 OS=Mus musculus GN=Arf3 ... [more]
ARF3_HUMAN6.894e-2168.12ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 ... [more]
ARF3_BOVIN6.894e-2168.12ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE... [more]
ARL1_DROME9.003e-2177.05ADP-ribosylation factor-like protein 1 OS=Drosophi... [more]
ARF5_CHICK9.003e-2165.22ADP-ribosylation factor 5 OS=Gallus gallus GN=ARF5... [more]
ARF1_PLAFO2.006e-2065.22ADP-ribosylation factor 1 OS=Plasmodium falciparum... [more]

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Properties
Property NameValue
Genbank descriptionC32105G09EF RVDevelopN Citrus clementina cDNA clone C32105G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921511 ID=FC921511; Name=FC921511; organism=Citrus clementina; type=EST; length=702bp
GAGAACAGTTTTGTAATAACAACAATTAAACAAACCCCCCAAAACTTTCA
TCTTTTTTATTTTTTCATAACTCAAAAGTCTCAACAAATCTCGCAAGCAG
ACCCTCTTCCTTTTTTTCCAGGGAGGAACAGGGGACTCTGCTTTGCAGAT
CCAATACATAATTCAATCACAAAAAAAGCTTCAATTTTTCCGATCGGATC
ACTAAGAATACAAAATCGGAAACATGGGTATTATGTTTACGCGATTGTTC
TCTTCGCTCTTTGGCAACAAAGAGGCTAGGATTCTAGTTCTTGGCCTTGA
CAATGCTGGCAAAACTACGATTCTCTATCGGCTTCAAATGGGTGAAGTTG
TGTCAACTATTCCAACTATTGGATTTAATGTGGAGACAGTACAATATAAT
AACATCAAATTCCAAGTCTGGGATCTTGGTATGTCAGTATGCTTCCTTTG
ATCAGTATTTGCAACCTGCATTATCGACTTTTTGTTAAATTGATATCAAT
GTGGATTATTAACTGCATTTCTCTCCTTGGAACCATACGTTGTTTTACTC
TTGCTAATCTGCAATAAGAATCATGCTCATCTATGCATTTGCACCTGCAC
GACACTTGTGGACGGTATGATGCGAGTCCCACATGTGTTGATGACTAGAT
CTATGCAATTCAAGCAATGTATCATCTGAAGAAAGGTCTGATNCTGCCCT
AT
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