FC921527

Overview
NameFC921527
Unique NameFC921527
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_STRPI (50S ribosomal protein L2 OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=rplB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.371e-18
Identity = 45/88 (51.14%), Postives = 62/88 (70.45%), Query Frame = 1
Query:  421 QIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS 684
            ++G+ +PLA + +GT+IHNIE+ PG+GG+LVRAAG SA++L      + LVRL SG  ++I   CRAT+G V N  HG   L KAG+S
Sbjct:  125 KVGNALPLANIPVGTLIHNIELKPGRGGELVRAAGASAQVLGS-EGKYVLVRLQSGEVRMILGTCRATVGVVGNEQHGLVNLGKAGRS 211          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_STRP7 (50S ribosomal protein L2 OS=Streptococcus pneumoniae (strain 70585) GN=rplB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.371e-18
Identity = 45/88 (51.14%), Postives = 62/88 (70.45%), Query Frame = 1
Query:  421 QIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS 684
            ++G+ +PLA + +GT+IHNIE+ PG+GG+LVRAAG SA++L      + LVRL SG  ++I   CRAT+G V N  HG   L KAG+S
Sbjct:  125 KVGNALPLANIPVGTLIHNIELKPGRGGELVRAAGASAQVLGS-EGKYVLVRLQSGEVRMILGTCRATVGVVGNEQHGLVNLGKAGRS 211          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_STRP4 (50S ribosomal protein L2 OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=rplB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.371e-18
Identity = 45/88 (51.14%), Postives = 62/88 (70.45%), Query Frame = 1
Query:  421 QIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS 684
            ++G+ +PLA + +GT+IHNIE+ PG+GG+LVRAAG SA++L      + LVRL SG  ++I   CRAT+G V N  HG   L KAG+S
Sbjct:  125 KVGNALPLANIPVGTLIHNIELKPGRGGELVRAAGASAQVLGS-EGKYVLVRLQSGEVRMILGTCRATVGVVGNEQHGLVNLGKAGRS 211          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_STRP2 (50S ribosomal protein L2 OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=rplB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.371e-18
Identity = 45/88 (51.14%), Postives = 62/88 (70.45%), Query Frame = 1
Query:  421 QIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS 684
            ++G+ +PLA + +GT+IHNIE+ PG+GG+LVRAAG SA++L      + LVRL SG  ++I   CRAT+G V N  HG   L KAG+S
Sbjct:  125 KVGNALPLANIPVGTLIHNIELKPGRGGELVRAAGASAQVLGS-EGKYVLVRLQSGEVRMILGTCRATVGVVGNEQHGLVNLGKAGRS 211          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_THEPX (50S ribosomal protein L2 OS=Thermoanaerobacter sp. (strain X514) GN=rplB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.015e-18
Identity = 45/92 (48.91%), Postives = 67/92 (72.83%), Query Frame = 1
Query:  409 DINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS 684
            +++ ++G+ +PL  + +GTIIHNIE+ PG+GG+LVRAAGT+A+++ +    +  VR+PSG  +LI   CRATIG VSN  H   K+ KAG+S
Sbjct:  121 NVDIKVGNALPLRNIPVGTIIHNIELIPGKGGQLVRAAGTAAQLMAK-EGDYVQVRMPSGEIRLIKADCRATIGQVSNLDHENVKIGKAGRS 211          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_THEP3 (50S ribosomal protein L2 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.015e-18
Identity = 45/92 (48.91%), Postives = 67/92 (72.83%), Query Frame = 1
Query:  409 DINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS 684
            +++ ++G+ +PL  + +GTIIHNIE+ PG+GG+LVRAAGT+A+++ +    +  VR+PSG  +LI   CRATIG VSN  H   K+ KAG+S
Sbjct:  121 NVDIKVGNALPLRNIPVGTIIHNIELIPGKGGQLVRAAGTAAQLMAK-EGDYVQVRMPSGEIRLIKADCRATIGQVSNLDHENVKIGKAGRS 211          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_BACCR (50S ribosomal protein L2 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rplB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.162e-18
Identity = 45/99 (45.45%), Postives = 69/99 (69.70%), Query Frame = 1
Query:  388 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS 684
            M  M+  + + +IG+ +PL  + +GT++HNIE+ PG+GG+LVR+AGTSA++L +    + LVRL SG  +L+ + CRA+IG V N  H   K+ KAG+S
Sbjct:  114 MEVMSGPEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVLGK-EGKYVLVRLTSGEVRLVLSACRASIGQVGNEQHELIKIGKAGRS 211          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_BACC4 (50S ribosomal protein L2 OS=Bacillus cereus (strain B4264) GN=rplB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.162e-18
Identity = 45/99 (45.45%), Postives = 69/99 (69.70%), Query Frame = 1
Query:  388 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS 684
            M  M+  + + +IG+ +PL  + +GT++HNIE+ PG+GG+LVR+AGTSA++L +    + LVRL SG  +L+ + CRA+IG V N  H   K+ KAG+S
Sbjct:  114 MEVMSGPEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVLGK-EGKYVLVRLTSGEVRLVLSACRASIGQVGNEQHELIKIGKAGRS 211          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_BACC2 (50S ribosomal protein L2 OS=Bacillus cereus (strain G9842) GN=rplB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.162e-18
Identity = 45/99 (45.45%), Postives = 69/99 (69.70%), Query Frame = 1
Query:  388 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS 684
            M  M+  + + +IG+ +PL  + +GT++HNIE+ PG+GG+LVR+AGTSA++L +    + LVRL SG  +L+ + CRA+IG V N  H   K+ KAG+S
Sbjct:  114 MEVMSGPEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVLGK-EGKYVLVRLTSGEVRLVLSACRASIGQVGNEQHELIKIGKAGRS 211          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_DICT6 (50S ribosomal protein L2 OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=rplB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.197e-17
Identity = 48/96 (50.00%), Postives = 67/96 (69.79%), Query Frame = 1
Query:  397 MAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS 684
            M+  +++ +IG+ +PL  +  GT+IHN+E+ PG+GG+LVRAAGT+A+IL +    +  VRLPSG  +L D  CRATIG VSN  H    L KAG+S
Sbjct:  117 MSGENVDIKIGNNLPLKNIPDGTLIHNLELYPGRGGQLVRAAGTAAQILGK-EGKWAYVRLPSGEIRLFDLNCRATIGQVSNVDHQNVSLGKAGRS 211          
The following BLAST results are available for this feature:
BLAST of FC921527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_STRPI5.371e-1851.1450S ribosomal protein L2 OS=Streptococcus pneumoni... [more]
RL2_STRP75.371e-1851.1450S ribosomal protein L2 OS=Streptococcus pneumoni... [more]
RL2_STRP45.371e-1851.1450S ribosomal protein L2 OS=Streptococcus pneumoni... [more]
RL2_STRP25.371e-1851.1450S ribosomal protein L2 OS=Streptococcus pneumoni... [more]
RL2_THEPX7.015e-1848.9150S ribosomal protein L2 OS=Thermoanaerobacter sp.... [more]
RL2_THEP37.015e-1848.9150S ribosomal protein L2 OS=Thermoanaerobacter pse... [more]
RL2_BACCR9.162e-1845.4550S ribosomal protein L2 OS=Bacillus cereus (strai... [more]
RL2_BACC49.162e-1845.4550S ribosomal protein L2 OS=Bacillus cereus (strai... [more]
RL2_BACC29.162e-1845.4550S ribosomal protein L2 OS=Bacillus cereus (strai... [more]
RL2_DICT61.197e-1750.0050S ribosomal protein L2 OS=Dictyoglomus thermophi... [more]

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Properties
Property NameValue
Genbank descriptionC32106A06EF RVDevelopN Citrus clementina cDNA clone C32106A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921527 ID=FC921527; Name=FC921527; organism=Citrus clementina; type=EST; length=695bp
GATCTCTCTAGTCTCTACTCACTTAGAAAAACTCTCACGGTGGCCGTCAC
CTTTCTTCTCAGTGTGATCACCCATCTTTCAATTCCACAGCATTCTTTTC
TCAGCCGTGGGGTGCTTTAGCTTCTGTCACCGCCGGCAACATGTTGTGAT
AGACAGTGAAATCAACAGAAGAAAACAAAACGTAGGAGAAAGAGACACAG
AAAGAGATCAGCAGAAATGGCTTTGTGCAGAGTACGCTCAGCTTCATCGA
CGCTCTTCAACAGGCTTCTCTGTCCTTCCGTTCTCAACAACAACACTACT
TATCGCTATCAGTCCTCTGAAACCGAATTAGTTGGTGATCCTTCAAAACA
AGAAAAACCAAAAAAAGAAACTGTGCGTGATAAGATAATGAGACAGATGG
CTCATGTTGATATAAATTCTCAAATTGGAAGTTGCATGCCACTTGCTTGT
ATGCGTATTGGGACCATCATTCACAACATTGAGGTAAACCCAGGACAAGG
TGGCAAGCTAGTTAGAGCTGCGGGGACGTCAGCCAAGATTTTGAAAGAAC
CCACTTCAAGCTTCTGTTTAGTAAGACTACCTTCTGGTAATGAGAAACTG
ATTGACACTAGATGTCGAGCCACCATTGGTACAGTGTCTAACCCAAGCCA
TGGAGCTAAGAAGCTTANGAAGGCTGGTCAGAGCGTTGGTTGGGT
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