FC921527

Overview
NameFC921527
Unique NameFC921527
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_BACWK (50S ribosomal protein L2 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rplB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.197e-17
Identity = 45/99 (45.45%), Postives = 69/99 (69.70%), Query Frame = 1
Query:  388 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS 684
            M  M+  + + +IG+ +PL  + +GT++HNIE+ PG+GG+LVR+AGTSA++L +    + LVRL SG  +L+ + CRA+IG V N  H   K+ KAG+S
Sbjct:  114 MEVMSGPESDIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVLGK-EGKYVLVRLTSGEVRLVLSACRASIGQVGNEQHELIKIGKAGRS 211          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_STRS7 (50S ribosomal protein L2 OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.563e-17
Identity = 44/92 (47.83%), Postives = 64/92 (69.57%), Query Frame = 1
Query:  409 DINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS 684
            D + +IG+ +PLA + +GT++HNIE+ PG+GG+LVRAAG SA++L +    + LVRL SG  ++I   CRAT+GTV N       + KAG+S
Sbjct:  121 DADIKIGNALPLANIPVGTVVHNIELKPGKGGELVRAAGASAQVLGQ-EGKYVLVRLQSGEVRMILGTCRATVGTVGNEQQSLVNIGKAGRS 211          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_STRPZ (50S ribosomal protein L2 OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.563e-17
Identity = 44/92 (47.83%), Postives = 64/92 (69.57%), Query Frame = 1
Query:  409 DINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS 684
            D + ++G+ +PLA + +GT++HNIE+ PG+GG+LVRAAG SA++L +    + LVRL SG  ++I   CRATIGTV N       + KAG+S
Sbjct:  121 DADIKVGNALPLANIPVGTVVHNIELKPGKGGELVRAAGASAQVLGQ-EGKYVLVRLQSGEVRMILGTCRATIGTVGNEQQSLVNIGKAGRS 211          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_STRPM (50S ribosomal protein L2 OS=Streptococcus pyogenes serotype M28 GN=rplB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.563e-17
Identity = 44/92 (47.83%), Postives = 64/92 (69.57%), Query Frame = 1
Query:  409 DINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS 684
            D + ++G+ +PLA + +GT++HNIE+ PG+GG+LVRAAG SA++L +    + LVRL SG  ++I   CRATIGTV N       + KAG+S
Sbjct:  121 DADIKVGNALPLANIPVGTVVHNIELKPGKGGELVRAAGASAQVLGQ-EGKYVLVRLQSGEVRMILGTCRATIGTVGNEQQSLVNIGKAGRS 211          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_STRPG (50S ribosomal protein L2 OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.563e-17
Identity = 44/92 (47.83%), Postives = 64/92 (69.57%), Query Frame = 1
Query:  409 DINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS 684
            D + ++G+ +PLA + +GT++HNIE+ PG+GG+LVRAAG SA++L +    + LVRL SG  ++I   CRATIGTV N       + KAG+S
Sbjct:  121 DADIKVGNALPLANIPVGTVVHNIELKPGKGGELVRAAGASAQVLGQ-EGKYVLVRLQSGEVRMILGTCRATIGTVGNEQQSLVNIGKAGRS 211          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_STRPF (50S ribosomal protein L2 OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.563e-17
Identity = 44/92 (47.83%), Postives = 64/92 (69.57%), Query Frame = 1
Query:  409 DINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS 684
            D + ++G+ +PLA + +GT++HNIE+ PG+GG+LVRAAG SA++L +    + LVRL SG  ++I   CRATIGTV N       + KAG+S
Sbjct:  121 DADIKVGNALPLANIPVGTVVHNIELKPGKGGELVRAAGASAQVLGQ-EGKYVLVRLQSGEVRMILGTCRATIGTVGNEQQSLVNIGKAGRS 211          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_STRPD (50S ribosomal protein L2 OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.563e-17
Identity = 44/92 (47.83%), Postives = 64/92 (69.57%), Query Frame = 1
Query:  409 DINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS 684
            D + ++G+ +PLA + +GT++HNIE+ PG+GG+LVRAAG SA++L +    + LVRL SG  ++I   CRATIGTV N       + KAG+S
Sbjct:  121 DADIKVGNALPLANIPVGTVVHNIELKPGKGGELVRAAGASAQVLGQ-EGKYVLVRLQSGEVRMILGTCRATIGTVGNEQQSLVNIGKAGRS 211          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_STRPC (50S ribosomal protein L2 OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.563e-17
Identity = 44/92 (47.83%), Postives = 64/92 (69.57%), Query Frame = 1
Query:  409 DINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS 684
            D + ++G+ +PLA + +GT++HNIE+ PG+GG+LVRAAG SA++L +    + LVRL SG  ++I   CRATIGTV N       + KAG+S
Sbjct:  121 DADIKVGNALPLANIPVGTVVHNIELKPGKGGELVRAAGASAQVLGQ-EGKYVLVRLQSGEVRMILGTCRATIGTVGNEQQSLVNIGKAGRS 211          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_STRPB (50S ribosomal protein L2 OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.563e-17
Identity = 44/92 (47.83%), Postives = 64/92 (69.57%), Query Frame = 1
Query:  409 DINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS 684
            D + ++G+ +PLA + +GT++HNIE+ PG+GG+LVRAAG SA++L +    + LVRL SG  ++I   CRATIGTV N       + KAG+S
Sbjct:  121 DADIKVGNALPLANIPVGTVVHNIELKPGKGGELVRAAGASAQVLGQ-EGKYVLVRLQSGEVRMILGTCRATIGTVGNEQQSLVNIGKAGRS 211          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_STRP8 (50S ribosomal protein L2 OS=Streptococcus pyogenes serotype M18 GN=rplB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.563e-17
Identity = 44/92 (47.83%), Postives = 64/92 (69.57%), Query Frame = 1
Query:  409 DINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS 684
            D + ++G+ +PLA + +GT++HNIE+ PG+GG+LVRAAG SA++L +    + LVRL SG  ++I   CRATIGTV N       + KAG+S
Sbjct:  121 DADIKVGNALPLANIPVGTVVHNIELKPGKGGELVRAAGASAQVLGQ-EGKYVLVRLQSGEVRMILGTCRATIGTVGNEQQSLVNIGKAGRS 211          
The following BLAST results are available for this feature:
BLAST of FC921527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_BACWK1.197e-1745.4550S ribosomal protein L2 OS=Bacillus weihenstephan... [more]
RL2_STRS71.563e-1747.8350S ribosomal protein L2 OS=Streptococcus equi sub... [more]
RL2_STRPZ1.563e-1747.8350S ribosomal protein L2 OS=Streptococcus pyogenes... [more]
RL2_STRPM1.563e-1747.8350S ribosomal protein L2 OS=Streptococcus pyogenes... [more]
RL2_STRPG1.563e-1747.8350S ribosomal protein L2 OS=Streptococcus pyogenes... [more]
RL2_STRPF1.563e-1747.8350S ribosomal protein L2 OS=Streptococcus pyogenes... [more]
RL2_STRPD1.563e-1747.8350S ribosomal protein L2 OS=Streptococcus pyogenes... [more]
RL2_STRPC1.563e-1747.8350S ribosomal protein L2 OS=Streptococcus pyogenes... [more]
RL2_STRPB1.563e-1747.8350S ribosomal protein L2 OS=Streptococcus pyogenes... [more]
RL2_STRP81.563e-1747.8350S ribosomal protein L2 OS=Streptococcus pyogenes... [more]

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Properties
Property NameValue
Genbank descriptionC32106A06EF RVDevelopN Citrus clementina cDNA clone C32106A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921527 ID=FC921527; Name=FC921527; organism=Citrus clementina; type=EST; length=695bp
GATCTCTCTAGTCTCTACTCACTTAGAAAAACTCTCACGGTGGCCGTCAC
CTTTCTTCTCAGTGTGATCACCCATCTTTCAATTCCACAGCATTCTTTTC
TCAGCCGTGGGGTGCTTTAGCTTCTGTCACCGCCGGCAACATGTTGTGAT
AGACAGTGAAATCAACAGAAGAAAACAAAACGTAGGAGAAAGAGACACAG
AAAGAGATCAGCAGAAATGGCTTTGTGCAGAGTACGCTCAGCTTCATCGA
CGCTCTTCAACAGGCTTCTCTGTCCTTCCGTTCTCAACAACAACACTACT
TATCGCTATCAGTCCTCTGAAACCGAATTAGTTGGTGATCCTTCAAAACA
AGAAAAACCAAAAAAAGAAACTGTGCGTGATAAGATAATGAGACAGATGG
CTCATGTTGATATAAATTCTCAAATTGGAAGTTGCATGCCACTTGCTTGT
ATGCGTATTGGGACCATCATTCACAACATTGAGGTAAACCCAGGACAAGG
TGGCAAGCTAGTTAGAGCTGCGGGGACGTCAGCCAAGATTTTGAAAGAAC
CCACTTCAAGCTTCTGTTTAGTAAGACTACCTTCTGGTAATGAGAAACTG
ATTGACACTAGATGTCGAGCCACCATTGGTACAGTGTCTAACCCAAGCCA
TGGAGCTAAGAAGCTTANGAAGGCTGGTCAGAGCGTTGGTTGGGT
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