FC921527

Overview
NameFC921527
Unique NameFC921527
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_ACIBS (50S ribosomal protein L2 OS=Acinetobacter baumannii (strain SDF) GN=rplB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.159e-12
Identity = 35/84 (41.67%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  427 GSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAG 678
            G+C+PL  M IG+ +HN+E+  G+G +L R+AG S ++L     S+ ++RL SG  + +   CRA IG VSN  +  + L KAG
Sbjct:  127 GNCLPLRNMPIGSTLHNVELKIGKGAQLARSAGASVQLLGR-DGSYAIIRLRSGEMRKVHVECRAVIGEVSNQENNLRSLGKAG 209          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_ACIB5 (50S ribosomal protein L2 OS=Acinetobacter baumannii (strain AB0057) GN=rplB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.159e-12
Identity = 35/84 (41.67%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  427 GSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAG 678
            G+C+PL  M IG+ +HN+E+  G+G +L R+AG S ++L     S+ ++RL SG  + +   CRA IG VSN  +  + L KAG
Sbjct:  127 GNCLPLRNMPIGSTLHNVELKIGKGAQLARSAGASVQLLGR-DGSYAIIRLRSGEMRKVHVECRAVIGEVSNQENNLRSLGKAG 209          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_ACIB3 (50S ribosomal protein L2 OS=Acinetobacter baumannii (strain AB307-0294) GN=rplB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.159e-12
Identity = 35/84 (41.67%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  427 GSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAG 678
            G+C+PL  M IG+ +HN+E+  G+G +L R+AG S ++L     S+ ++RL SG  + +   CRA IG VSN  +  + L KAG
Sbjct:  127 GNCLPLRNMPIGSTLHNVELKIGKGAQLARSAGASVQLLGR-DGSYAIIRLRSGEMRKVHVECRAVIGEVSNQENNLRSLGKAG 209          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RK2_OSTTA (50S ribosomal protein L2, chloroplastic OS=Ostreococcus tauri GN=rpl2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.159e-12
Identity = 45/126 (35.71%), Postives = 69/126 (54.76%), Query Frame = 1
Query:  307 YQSSETELVGDPSKQEKPKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS 684
            YQ  E   +  P+  E      + D I+     V+    +G+ +PL  M +G  +HNIE++P +GG+LVR+AG  A+++ +    +  +RLPSG  +LI  +C ATIG V N       L KAG+S
Sbjct:   96 YQDGEKRYILHPNGLE------IGDSIIASETAVNA---VGNSLPLMAMPLGVQVHNIEMHPKKGGQLVRSAGAVAQLVAK-EGEYVTLRLPSGEVRLISNKCWATIGQVGNMEAMNLSLGKAGRS 211          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RK2A_LIRTU (50S ribosomal protein L2-A, chloroplastic OS=Liriodendron tulipifera GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.159e-12
Identity = 43/108 (39.81%), Postives = 63/108 (58.33%), Query Frame = 1
Query:  358 PKKETVRDKIMRQMAHVDINSQIGSCMPLAC-MRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAG 678
            P+   + D I+   +  ++   +G+ +PL+  M +GT IHNIE+  G+GG+L RAAG  AK++ +   S  L RLPSG  +LI   C AT+G V N     K L +AG
Sbjct:  104 PRGAIIGDTIV---SGTEVPISMGNALPLSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATL-RLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAG 207          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RK2A_CHLSC (50S ribosomal protein L2-A, chloroplastic OS=Chloranthus spicatus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.159e-12
Identity = 43/109 (39.45%), Postives = 63/109 (57.80%), Query Frame = 1
Query:  358 PKKETVRDKIMRQMAHVDINSQIGSCMPLAC--MRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAG 678
            P+   + D I+   +  ++   +G+ +PL+   M +GT IHNIE+  G+GG+L RAAG  AK++ +   S  L RLPSG  +LI   C AT+G V N     K L +AG
Sbjct:  105 PRGAIIGDTIV---SGTEVPISMGNALPLSATDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATL-RLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAG 209          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_TERTT (50S ribosomal protein L2 OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=rplB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.514e-12
Identity = 33/86 (38.37%), Postives = 55/86 (63.95%), Query Frame = 1
Query:  421 QIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAG 678
            ++G+ +PL  + +G++IH IE+ PG+G +L R+AG S +++      +  +RL SG  + ++  CRAT+G VSN  H  + L KAG
Sbjct:  125 KVGNTLPLRNVPVGSVIHCIELKPGKGAQLARSAGASVQLVAR-EGQYATLRLRSGEMRKVEVECRATLGEVSNSEHSLRSLGKAG 209          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_SPIKU (50S ribosomal protein L2 OS=Spiroplasma kunkelii GN=rplB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.514e-12
Identity = 34/89 (38.20%), Postives = 56/89 (62.92%), Query Frame = 1
Query:  421 QIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKIL-KEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS 684
            ++G+CM L  +  GT++HN+E+ PG+GG+L R+AG+S + L K+    +  +RL SG  + +   CRAT+G V N  +      KAG++
Sbjct:  125 KVGNCMKLKNIPEGTVLHNLELRPGKGGQLARSAGSSVQFLGKDEDGKYVTIRLTSGEVRKVLGECRATVGEVGNEDYALVNWGKAGRN 213          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_NEIMF (50S ribosomal protein L2 OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=rplB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.514e-12
Identity = 36/86 (41.86%), Postives = 55/86 (63.95%), Query Frame = 1
Query:  421 QIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAG 678
            ++G+ +P+  + +GT IH IE+ PG+G ++ R+AG SA +L +   ++  VRL SG  + I+  CRATIG V N     KK+ KAG
Sbjct:  125 KVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGASAVLLAK-EGAYAQVRLRSGEVRKINVNCRATIGEVGNEEQSLKKIGKAG 209          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_NEIMA (50S ribosomal protein L2 OS=Neisseria meningitidis serogroup A GN=rplB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.514e-12
Identity = 36/86 (41.86%), Postives = 55/86 (63.95%), Query Frame = 1
Query:  421 QIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAG 678
            ++G+ +P+  + +GT IH IE+ PG+G ++ R+AG SA +L +   ++  VRL SG  + I+  CRATIG V N     KK+ KAG
Sbjct:  125 KVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGASAVLLAK-EGAYAQVRLRSGEVRKINVNCRATIGEVGNEEQSLKKIGKAG 209          
The following BLAST results are available for this feature:
BLAST of FC921527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_ACIBS1.159e-1241.6750S ribosomal protein L2 OS=Acinetobacter baumanni... [more]
RL2_ACIB51.159e-1241.6750S ribosomal protein L2 OS=Acinetobacter baumanni... [more]
RL2_ACIB31.159e-1241.6750S ribosomal protein L2 OS=Acinetobacter baumanni... [more]
RK2_OSTTA1.159e-1235.7150S ribosomal protein L2, chloroplastic OS=Ostreoc... [more]
RK2A_LIRTU1.159e-1239.8150S ribosomal protein L2-A, chloroplastic OS=Lirio... [more]
RK2A_CHLSC1.159e-1239.4550S ribosomal protein L2-A, chloroplastic OS=Chlor... [more]
RL2_TERTT1.514e-1238.3750S ribosomal protein L2 OS=Teredinibacter turnera... [more]
RL2_SPIKU1.514e-1238.2050S ribosomal protein L2 OS=Spiroplasma kunkelii G... [more]
RL2_NEIMF1.514e-1241.8650S ribosomal protein L2 OS=Neisseria meningitidis... [more]
RL2_NEIMA1.514e-1241.8650S ribosomal protein L2 OS=Neisseria meningitidis... [more]

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Properties
Property NameValue
Genbank descriptionC32106A06EF RVDevelopN Citrus clementina cDNA clone C32106A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921527 ID=FC921527; Name=FC921527; organism=Citrus clementina; type=EST; length=695bp
GATCTCTCTAGTCTCTACTCACTTAGAAAAACTCTCACGGTGGCCGTCAC
CTTTCTTCTCAGTGTGATCACCCATCTTTCAATTCCACAGCATTCTTTTC
TCAGCCGTGGGGTGCTTTAGCTTCTGTCACCGCCGGCAACATGTTGTGAT
AGACAGTGAAATCAACAGAAGAAAACAAAACGTAGGAGAAAGAGACACAG
AAAGAGATCAGCAGAAATGGCTTTGTGCAGAGTACGCTCAGCTTCATCGA
CGCTCTTCAACAGGCTTCTCTGTCCTTCCGTTCTCAACAACAACACTACT
TATCGCTATCAGTCCTCTGAAACCGAATTAGTTGGTGATCCTTCAAAACA
AGAAAAACCAAAAAAAGAAACTGTGCGTGATAAGATAATGAGACAGATGG
CTCATGTTGATATAAATTCTCAAATTGGAAGTTGCATGCCACTTGCTTGT
ATGCGTATTGGGACCATCATTCACAACATTGAGGTAAACCCAGGACAAGG
TGGCAAGCTAGTTAGAGCTGCGGGGACGTCAGCCAAGATTTTGAAAGAAC
CCACTTCAAGCTTCTGTTTAGTAAGACTACCTTCTGGTAATGAGAAACTG
ATTGACACTAGATGTCGAGCCACCATTGGTACAGTGTCTAACCCAAGCCA
TGGAGCTAAGAAGCTTANGAAGGCTGGTCAGAGCGTTGGTTGGGT
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