FC921527

Overview
NameFC921527
Unique NameFC921527
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_RICRO (50S ribosomal protein L2 OS=Rickettsia rickettsii (strain Iowa) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.041e-17
Identity = 44/114 (38.60%), Postives = 75/114 (65.79%), Query Frame = 1
Query:  358 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS--VGW 693
            P+K +V D+++      D + +IG+C+PL C+ IGT +HN+E+  G+GG++ R+AGTS  ++ +  S +  ++L SG  +L+   C+ATIG++SNP      L KAG++  +GW
Sbjct:  107 PQKLSVGDRVISSQ---DADIKIGNCLPLKCIPIGTTLHNVEMKVGKGGQIARSAGTSVDLVGK-DSGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAGRNRWLGW 216          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_RICPU (50S ribosomal protein L2 OS=Rickettsia peacockii (strain Rustic) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.041e-17
Identity = 44/114 (38.60%), Postives = 75/114 (65.79%), Query Frame = 1
Query:  358 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS--VGW 693
            P+K +V D+++      D + +IG+C+PL C+ IGT +HN+E+  G+GG++ R+AGTS  ++ +  S +  ++L SG  +L+   C+ATIG++SNP      L KAG++  +GW
Sbjct:  107 PQKLSVGDRVISSQ---DADIKIGNCLPLKCIPIGTTLHNVEMKVGKGGQIARSAGTSVDLVGK-DSGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAGRNRWLGW 216          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_RICCN (50S ribosomal protein L2 OS=Rickettsia conorii GN=rplB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.041e-17
Identity = 44/114 (38.60%), Postives = 75/114 (65.79%), Query Frame = 1
Query:  358 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS--VGW 693
            P+K +V D+++      D + +IG+C+PL C+ IGT +HN+E+  G+GG++ R+AGTS  ++ +  S +  ++L SG  +L+   C+ATIG++SNP      L KAG++  +GW
Sbjct:  107 PQKLSVGDRVISSQ---DADIKIGNCLPLKCIPIGTTLHNVEMKVGKGGQIARSAGTSVDLVGK-DSGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAGRNRWLGW 216          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_RICAE (50S ribosomal protein L2 OS=Rickettsia africae (strain ESF-5) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.041e-17
Identity = 44/114 (38.60%), Postives = 75/114 (65.79%), Query Frame = 1
Query:  358 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS--VGW 693
            P+K +V D+++      D + +IG+C+PL C+ IGT +HN+E+  G+GG++ R+AGTS  ++ +  S +  ++L SG  +L+   C+ATIG++SNP      L KAG++  +GW
Sbjct:  107 PQKLSVGDRVISSQ---DADIKIGNCLPLKCIPIGTTLHNVEMKVGKGGQIARSAGTSVDLVGK-DSGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAGRNRWLGW 216          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_MACCJ (50S ribosomal protein L2 OS=Macrococcus caseolyticus (strain JCSC5402) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.041e-17
Identity = 43/88 (48.86%), Postives = 63/88 (71.59%), Query Frame = 1
Query:  421 QIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS 684
            ++G+C+PL  + +GT+IHNIE+ PG+GG+LVR+AG SA++L +    + LVRL SG  ++I + CRATIG V N  H    + KAG+S
Sbjct:  125 KVGNCLPLQNIPVGTVIHNIELKPGKGGQLVRSAGASAQVLGK-EGKYVLVRLKSGEVRMILSTCRATIGQVGNEQHELINIGKAGRS 211          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_GEOSW (50S ribosomal protein L2 OS=Geobacillus sp. (strain WCH70) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.041e-17
Identity = 44/99 (44.44%), Postives = 67/99 (67.68%), Query Frame = 1
Query:  388 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS 684
            M  M+  D + ++G+ +PL  + +GT +HNIE+ PG+GG+LVRAAGTSA++L +    + +VRL SG  ++I   CRAT+G V N  H   K+ KAG++
Sbjct:  114 MEIMSGPDADIKVGNALPLENIPVGTFVHNIELKPGRGGQLVRAAGTSAQVLGK-EGKYVIVRLASGEVRMILGACRATVGEVGNEQHELVKIGKAGRA 211          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_ENTFA (50S ribosomal protein L2 OS=Enterococcus faecalis GN=rplB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.041e-17
Identity = 43/99 (43.43%), Postives = 69/99 (69.70%), Query Frame = 1
Query:  388 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS 684
            MR ++  + + ++G+ +PL  + +GT+IHNIE+ PG+GG+L+R+AGTSA++L +    + L+RL SG  ++I   CRATIG+V N  H    + KAG+S
Sbjct:  114 MRLVSGPEADIKVGNALPLENIPVGTVIHNIEMKPGKGGQLIRSAGTSAQVLGK-EGKYVLIRLNSGEVRMILATCRATIGSVGNEQHELINIGKAGRS 211          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_OCHA4 (50S ribosomal protein L2 OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=rplB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.666e-17
Identity = 45/110 (40.91%), Postives = 72/110 (65.45%), Query Frame = 1
Query:  358 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQSV 687
            P++  V DK++   A   ++ + G+ MPLA M +GTI+HN+E+ PG+GG++ R+AGT A+++        ++RL SG ++L+   C A++G VSNP HG     KAG+SV
Sbjct:  107 PQRLAVGDKVV---AGNSVDVKPGNAMPLASMPVGTIVHNVELKPGKGGQIARSAGTYAQLVGR-DQGMAILRLNSGEQRLVPGACFASVGAVSNPDHGNINDGKAGRSV 212          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_NEOSM (50S ribosomal protein L2 OS=Neorickettsia sennetsu (strain Miyayama) GN=rplB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.666e-17
Identity = 43/86 (50.00%), Postives = 61/86 (70.93%), Query Frame = 1
Query:  427 GSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS 684
            G+CMPL  + +GT +HN+E+ PG GG+LVR+AG+SA+++     ++ LV LPSG ++LI + C ATIG VSN      KL KAG+S
Sbjct:  132 GACMPLGKVPLGTTVHNVELKPGAGGQLVRSAGSSARVIAR-DGNYTLVTLPSGEKRLILSTCHATIGAVSNADRKNTKLGKAGRS 216          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_LACSS (50S ribosomal protein L2 OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=rplB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.666e-17
Identity = 44/92 (47.83%), Postives = 66/92 (71.74%), Query Frame = 1
Query:  406 VDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQ 681
            V+ + ++G+ +PLA +  GT+IHNIE+ PG+GG+LVR+AGTSA++L +    + +VRL SG  ++I   CRAT+GTV N  H   K+ KAG+
Sbjct:  120 VNADIKVGNALPLANIPDGTLIHNIELKPGKGGQLVRSAGTSAQLLGK-EGKYAIVRLTSGETRMILLTCRATVGTVGNGQHELIKIGKAGR 210          
The following BLAST results are available for this feature:
BLAST of FC921527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_RICRO2.041e-1738.6050S ribosomal protein L2 OS=Rickettsia rickettsii ... [more]
RL2_RICPU2.041e-1738.6050S ribosomal protein L2 OS=Rickettsia peacockii (... [more]
RL2_RICCN2.041e-1738.6050S ribosomal protein L2 OS=Rickettsia conorii GN=... [more]
RL2_RICAE2.041e-1738.6050S ribosomal protein L2 OS=Rickettsia africae (st... [more]
RL2_MACCJ2.041e-1748.8650S ribosomal protein L2 OS=Macrococcus caseolytic... [more]
RL2_GEOSW2.041e-1744.4450S ribosomal protein L2 OS=Geobacillus sp. (strai... [more]
RL2_ENTFA2.041e-1743.4350S ribosomal protein L2 OS=Enterococcus faecalis ... [more]
RL2_OCHA42.666e-1740.9150S ribosomal protein L2 OS=Ochrobactrum anthropi ... [more]
RL2_NEOSM2.666e-1750.0050S ribosomal protein L2 OS=Neorickettsia sennetsu... [more]
RL2_LACSS2.666e-1747.8350S ribosomal protein L2 OS=Lactobacillus sakei su... [more]

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Properties
Property NameValue
Genbank descriptionC32106A06EF RVDevelopN Citrus clementina cDNA clone C32106A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921527 ID=FC921527; Name=FC921527; organism=Citrus clementina; type=EST; length=695bp
GATCTCTCTAGTCTCTACTCACTTAGAAAAACTCTCACGGTGGCCGTCAC
CTTTCTTCTCAGTGTGATCACCCATCTTTCAATTCCACAGCATTCTTTTC
TCAGCCGTGGGGTGCTTTAGCTTCTGTCACCGCCGGCAACATGTTGTGAT
AGACAGTGAAATCAACAGAAGAAAACAAAACGTAGGAGAAAGAGACACAG
AAAGAGATCAGCAGAAATGGCTTTGTGCAGAGTACGCTCAGCTTCATCGA
CGCTCTTCAACAGGCTTCTCTGTCCTTCCGTTCTCAACAACAACACTACT
TATCGCTATCAGTCCTCTGAAACCGAATTAGTTGGTGATCCTTCAAAACA
AGAAAAACCAAAAAAAGAAACTGTGCGTGATAAGATAATGAGACAGATGG
CTCATGTTGATATAAATTCTCAAATTGGAAGTTGCATGCCACTTGCTTGT
ATGCGTATTGGGACCATCATTCACAACATTGAGGTAAACCCAGGACAAGG
TGGCAAGCTAGTTAGAGCTGCGGGGACGTCAGCCAAGATTTTGAAAGAAC
CCACTTCAAGCTTCTGTTTAGTAAGACTACCTTCTGGTAATGAGAAACTG
ATTGACACTAGATGTCGAGCCACCATTGGTACAGTGTCTAACCCAAGCCA
TGGAGCTAAGAAGCTTANGAAGGCTGGTCAGAGCGTTGGTTGGGT
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