FC921527
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_RHOP5 (50S ribosomal protein L2 OS=Rhodopseudomonas palustris (strain BisA53) GN=rplB PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 7.756e-17 Identity = 49/114 (42.98%), Postives = 74/114 (64.91%), Query Frame = 1 Query: 358 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS--VGW 693 P++ V D ++ A+VD+ G+ MPL M IGTI+HN+E+ G+GG++ R+AGT A+++ + +VRL SG ++LI RC ATIG VSNP H + KAG++ +GW Sbjct: 107 PQRLAVGDTVIAG-AYVDVKP--GNVMPLGNMPIGTIVHNVEMKIGKGGQIARSAGTYAQLVGR-DHDYVIVRLNSGEQRLIHGRCTATIGAVSNPDHMNISIGKAGRTRWLGW 216
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_PERMH (50S ribosomal protein L2 OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=rplB PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 7.756e-17 Identity = 46/96 (47.92%), Postives = 63/96 (65.62%), Query Frame = 1 Query: 397 MAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS 684 +A D ++G+ +PL + +GT IHNIE+ PG+GG+LVRAAG SA+IL + VRLPSG +LI +C AT+GTV H KL KAG++ Sbjct: 117 VAGPDAEIKVGNALPLENIPVGTFIHNIELTPGKGGQLVRAAGMSAQILGR-QGDYVQVRLPSGEIRLIHKKCMATVGTVGLAEHELIKLGKAGRA 211
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_METSB (50S ribosomal protein L2 OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=rplB PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 7.756e-17 Identity = 47/117 (40.17%), Postives = 74/117 (63.25%), Query Frame = 1 Query: 334 GDPSKQEKPKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS 684 G+ S P++ +V D+++ D+ G+ MPLA M +GTI+HNIE+ G+GG +VR+AGT A+++ + ++RL SG ++LI +C AT+G VSNP H + KAG+S Sbjct: 99 GEQSYIIAPQRLSVGDEVVSSQ-QADVKP--GNAMPLASMPVGTIVHNIEMKIGKGGAMVRSAGTFAQVVGR-DQGYVIIRLNSGEQRLIHGQCFATVGAVSNPDHMNASIGKAGRS 211
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_BRASB (50S ribosomal protein L2 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rplB PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 7.756e-17 Identity = 49/108 (45.37%), Postives = 69/108 (63.89%), Query Frame = 1 Query: 358 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQ 681 P++ V D I+ +VD+ G+ MPL M +GTI+HNIEV G+GG+L R+AGT A+I+ + +VRL SG ++L+ RCR TIG VSNP H + KAG+ Sbjct: 107 PQRLAVGDTIVAGN-YVDVKP--GNVMPLGNMPVGTIVHNIEVKIGKGGQLARSAGTYAQIVGR-DQDYVIVRLNSGEQRLVHGRCRGTIGAVSNPDHMNTSIGKAGR 210
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_STRTD (50S ribosomal protein L2 OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=rplB PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.013e-16 Identity = 44/92 (47.83%), Postives = 63/92 (68.48%), Query Frame = 1 Query: 409 DINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS 684 D + ++G+ +PLA + +GT+IHNIE+ PG+G +LVRAAG SA++L + + LVRL SG ++I CRATIGTV N L KAG++ Sbjct: 121 DADIKVGNALPLANIPVGTVIHNIELKPGKGAELVRAAGASAQVLGQ-EGKYVLVRLQSGEVRMILGTCRATIGTVGNEQQSLINLGKAGRN 211
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_STRT2 (50S ribosomal protein L2 OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=rplB PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.013e-16 Identity = 44/92 (47.83%), Postives = 63/92 (68.48%), Query Frame = 1 Query: 409 DINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS 684 D + ++G+ +PLA + +GT+IHNIE+ PG+G +LVRAAG SA++L + + LVRL SG ++I CRATIGTV N L KAG++ Sbjct: 121 DADIKVGNALPLANIPVGTVIHNIELKPGKGAELVRAAGASAQVLGQ-EGKYVLVRLQSGEVRMILGTCRATIGTVGNEQQSLINLGKAGRN 211
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_STRT1 (50S ribosomal protein L2 OS=Streptococcus thermophilus (strain CNRZ 1066) GN=rplB PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.013e-16 Identity = 44/92 (47.83%), Postives = 63/92 (68.48%), Query Frame = 1 Query: 409 DINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS 684 D + ++G+ +PLA + +GT+IHNIE+ PG+G +LVRAAG SA++L + + LVRL SG ++I CRATIGTV N L KAG++ Sbjct: 121 DADIKVGNALPLANIPVGTVIHNIELKPGKGAELVRAAGASAQVLGQ-EGKYVLVRLQSGEVRMILGTCRATIGTVGNEQQSLINLGKAGRN 211
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_RICCK (50S ribosomal protein L2 OS=Rickettsia canadensis (strain McKiel) GN=rplB PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.013e-16 Identity = 45/114 (39.47%), Postives = 74/114 (64.91%), Query Frame = 1 Query: 358 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS--VGW 693 P+K +V DK++ D + +IG+C+PL + IGT +HN+E+ G+GG++ R+AGTS ++ + S + ++L SG +LI C+ATIG++SNP L KAG++ +GW Sbjct: 107 PQKLSVGDKVISSQ---DADIKIGNCLPLKFIPIGTTVHNVEMKVGKGGQIARSAGTSVDLVGK-DSGYAQIKLRSGEFRLIPLDCKATIGSISNPDQKNINLGKAGRNRWLGW 216
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_RICBR (50S ribosomal protein L2 OS=Rickettsia bellii (strain RML369-C) GN=rplB PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.013e-16 Identity = 47/114 (41.23%), Postives = 72/114 (63.16%), Query Frame = 1 Query: 358 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS--VGW 693 P+K V DKI+ D + +IG+C+PL + IGT +HN+E+ G+GG++ R+AGTS ++ + S + ++L SG +L+ C ATIGTVSNP L KAG++ +GW Sbjct: 107 PQKLVVGDKIISSK---DADIKIGNCLPLRYIPIGTTLHNVEMKVGKGGQIARSAGTSVDLVGK-DSGYAQIKLKSGEFRLVPLDCMATIGTVSNPDQKNINLGKAGRNRWLGW 216
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_RICB8 (50S ribosomal protein L2 OS=Rickettsia bellii (strain OSU 85-389) GN=rplB PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.013e-16 Identity = 47/114 (41.23%), Postives = 72/114 (63.16%), Query Frame = 1 Query: 358 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS--VGW 693 P+K V DKI+ D + +IG+C+PL + IGT +HN+E+ G+GG++ R+AGTS ++ + S + ++L SG +L+ C ATIGTVSNP L KAG++ +GW Sbjct: 107 PQKLVVGDKIISSK---DADIKIGNCLPLRYIPIGTTLHNVEMKVGKGGQIARSAGTSVDLVGK-DSGYAQIKLKSGEFRLVPLDCMATIGTVSNPDQKNINLGKAGRNRWLGW 216 The following BLAST results are available for this feature:
BLAST of FC921527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC921527 ID=FC921527; Name=FC921527; organism=Citrus clementina; type=EST; length=695bpback to top |