FC921527

Overview
NameFC921527
Unique NameFC921527
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_RHOP5 (50S ribosomal protein L2 OS=Rhodopseudomonas palustris (strain BisA53) GN=rplB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.756e-17
Identity = 49/114 (42.98%), Postives = 74/114 (64.91%), Query Frame = 1
Query:  358 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS--VGW 693
            P++  V D ++   A+VD+    G+ MPL  M IGTI+HN+E+  G+GG++ R+AGT A+++      + +VRL SG ++LI  RC ATIG VSNP H    + KAG++  +GW
Sbjct:  107 PQRLAVGDTVIAG-AYVDVKP--GNVMPLGNMPIGTIVHNVEMKIGKGGQIARSAGTYAQLVGR-DHDYVIVRLNSGEQRLIHGRCTATIGAVSNPDHMNISIGKAGRTRWLGW 216          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_PERMH (50S ribosomal protein L2 OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=rplB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.756e-17
Identity = 46/96 (47.92%), Postives = 63/96 (65.62%), Query Frame = 1
Query:  397 MAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS 684
            +A  D   ++G+ +PL  + +GT IHNIE+ PG+GG+LVRAAG SA+IL      +  VRLPSG  +LI  +C AT+GTV    H   KL KAG++
Sbjct:  117 VAGPDAEIKVGNALPLENIPVGTFIHNIELTPGKGGQLVRAAGMSAQILGR-QGDYVQVRLPSGEIRLIHKKCMATVGTVGLAEHELIKLGKAGRA 211          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_METSB (50S ribosomal protein L2 OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=rplB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.756e-17
Identity = 47/117 (40.17%), Postives = 74/117 (63.25%), Query Frame = 1
Query:  334 GDPSKQEKPKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS 684
            G+ S    P++ +V D+++      D+    G+ MPLA M +GTI+HNIE+  G+GG +VR+AGT A+++      + ++RL SG ++LI  +C AT+G VSNP H    + KAG+S
Sbjct:   99 GEQSYIIAPQRLSVGDEVVSSQ-QADVKP--GNAMPLASMPVGTIVHNIEMKIGKGGAMVRSAGTFAQVVGR-DQGYVIIRLNSGEQRLIHGQCFATVGAVSNPDHMNASIGKAGRS 211          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_BRASB (50S ribosomal protein L2 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rplB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.756e-17
Identity = 49/108 (45.37%), Postives = 69/108 (63.89%), Query Frame = 1
Query:  358 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQ 681
            P++  V D I+    +VD+    G+ MPL  M +GTI+HNIEV  G+GG+L R+AGT A+I+      + +VRL SG ++L+  RCR TIG VSNP H    + KAG+
Sbjct:  107 PQRLAVGDTIVAGN-YVDVKP--GNVMPLGNMPVGTIVHNIEVKIGKGGQLARSAGTYAQIVGR-DQDYVIVRLNSGEQRLVHGRCRGTIGAVSNPDHMNTSIGKAGR 210          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_STRTD (50S ribosomal protein L2 OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=rplB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.013e-16
Identity = 44/92 (47.83%), Postives = 63/92 (68.48%), Query Frame = 1
Query:  409 DINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS 684
            D + ++G+ +PLA + +GT+IHNIE+ PG+G +LVRAAG SA++L +    + LVRL SG  ++I   CRATIGTV N       L KAG++
Sbjct:  121 DADIKVGNALPLANIPVGTVIHNIELKPGKGAELVRAAGASAQVLGQ-EGKYVLVRLQSGEVRMILGTCRATIGTVGNEQQSLINLGKAGRN 211          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_STRT2 (50S ribosomal protein L2 OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=rplB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.013e-16
Identity = 44/92 (47.83%), Postives = 63/92 (68.48%), Query Frame = 1
Query:  409 DINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS 684
            D + ++G+ +PLA + +GT+IHNIE+ PG+G +LVRAAG SA++L +    + LVRL SG  ++I   CRATIGTV N       L KAG++
Sbjct:  121 DADIKVGNALPLANIPVGTVIHNIELKPGKGAELVRAAGASAQVLGQ-EGKYVLVRLQSGEVRMILGTCRATIGTVGNEQQSLINLGKAGRN 211          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_STRT1 (50S ribosomal protein L2 OS=Streptococcus thermophilus (strain CNRZ 1066) GN=rplB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.013e-16
Identity = 44/92 (47.83%), Postives = 63/92 (68.48%), Query Frame = 1
Query:  409 DINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS 684
            D + ++G+ +PLA + +GT+IHNIE+ PG+G +LVRAAG SA++L +    + LVRL SG  ++I   CRATIGTV N       L KAG++
Sbjct:  121 DADIKVGNALPLANIPVGTVIHNIELKPGKGAELVRAAGASAQVLGQ-EGKYVLVRLQSGEVRMILGTCRATIGTVGNEQQSLINLGKAGRN 211          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_RICCK (50S ribosomal protein L2 OS=Rickettsia canadensis (strain McKiel) GN=rplB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.013e-16
Identity = 45/114 (39.47%), Postives = 74/114 (64.91%), Query Frame = 1
Query:  358 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS--VGW 693
            P+K +V DK++      D + +IG+C+PL  + IGT +HN+E+  G+GG++ R+AGTS  ++ +  S +  ++L SG  +LI   C+ATIG++SNP      L KAG++  +GW
Sbjct:  107 PQKLSVGDKVISSQ---DADIKIGNCLPLKFIPIGTTVHNVEMKVGKGGQIARSAGTSVDLVGK-DSGYAQIKLRSGEFRLIPLDCKATIGSISNPDQKNINLGKAGRNRWLGW 216          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_RICBR (50S ribosomal protein L2 OS=Rickettsia bellii (strain RML369-C) GN=rplB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.013e-16
Identity = 47/114 (41.23%), Postives = 72/114 (63.16%), Query Frame = 1
Query:  358 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS--VGW 693
            P+K  V DKI+      D + +IG+C+PL  + IGT +HN+E+  G+GG++ R+AGTS  ++ +  S +  ++L SG  +L+   C ATIGTVSNP      L KAG++  +GW
Sbjct:  107 PQKLVVGDKIISSK---DADIKIGNCLPLRYIPIGTTLHNVEMKVGKGGQIARSAGTSVDLVGK-DSGYAQIKLKSGEFRLVPLDCMATIGTVSNPDQKNINLGKAGRNRWLGW 216          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_RICB8 (50S ribosomal protein L2 OS=Rickettsia bellii (strain OSU 85-389) GN=rplB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.013e-16
Identity = 47/114 (41.23%), Postives = 72/114 (63.16%), Query Frame = 1
Query:  358 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS--VGW 693
            P+K  V DKI+      D + +IG+C+PL  + IGT +HN+E+  G+GG++ R+AGTS  ++ +  S +  ++L SG  +L+   C ATIGTVSNP      L KAG++  +GW
Sbjct:  107 PQKLVVGDKIISSK---DADIKIGNCLPLRYIPIGTTLHNVEMKVGKGGQIARSAGTSVDLVGK-DSGYAQIKLKSGEFRLVPLDCMATIGTVSNPDQKNINLGKAGRNRWLGW 216          
The following BLAST results are available for this feature:
BLAST of FC921527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_RHOP57.756e-1742.9850S ribosomal protein L2 OS=Rhodopseudomonas palus... [more]
RL2_PERMH7.756e-1747.9250S ribosomal protein L2 OS=Persephonella marina (... [more]
RL2_METSB7.756e-1740.1750S ribosomal protein L2 OS=Methylocella silvestri... [more]
RL2_BRASB7.756e-1745.3750S ribosomal protein L2 OS=Bradyrhizobium sp. (st... [more]
RL2_STRTD1.013e-1647.8350S ribosomal protein L2 OS=Streptococcus thermoph... [more]
RL2_STRT21.013e-1647.8350S ribosomal protein L2 OS=Streptococcus thermoph... [more]
RL2_STRT11.013e-1647.8350S ribosomal protein L2 OS=Streptococcus thermoph... [more]
RL2_RICCK1.013e-1639.4750S ribosomal protein L2 OS=Rickettsia canadensis ... [more]
RL2_RICBR1.013e-1641.2350S ribosomal protein L2 OS=Rickettsia bellii (str... [more]
RL2_RICB81.013e-1641.2350S ribosomal protein L2 OS=Rickettsia bellii (str... [more]

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Properties
Property NameValue
Genbank descriptionC32106A06EF RVDevelopN Citrus clementina cDNA clone C32106A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921527 ID=FC921527; Name=FC921527; organism=Citrus clementina; type=EST; length=695bp
GATCTCTCTAGTCTCTACTCACTTAGAAAAACTCTCACGGTGGCCGTCAC
CTTTCTTCTCAGTGTGATCACCCATCTTTCAATTCCACAGCATTCTTTTC
TCAGCCGTGGGGTGCTTTAGCTTCTGTCACCGCCGGCAACATGTTGTGAT
AGACAGTGAAATCAACAGAAGAAAACAAAACGTAGGAGAAAGAGACACAG
AAAGAGATCAGCAGAAATGGCTTTGTGCAGAGTACGCTCAGCTTCATCGA
CGCTCTTCAACAGGCTTCTCTGTCCTTCCGTTCTCAACAACAACACTACT
TATCGCTATCAGTCCTCTGAAACCGAATTAGTTGGTGATCCTTCAAAACA
AGAAAAACCAAAAAAAGAAACTGTGCGTGATAAGATAATGAGACAGATGG
CTCATGTTGATATAAATTCTCAAATTGGAAGTTGCATGCCACTTGCTTGT
ATGCGTATTGGGACCATCATTCACAACATTGAGGTAAACCCAGGACAAGG
TGGCAAGCTAGTTAGAGCTGCGGGGACGTCAGCCAAGATTTTGAAAGAAC
CCACTTCAAGCTTCTGTTTAGTAAGACTACCTTCTGGTAATGAGAAACTG
ATTGACACTAGATGTCGAGCCACCATTGGTACAGTGTCTAACCCAAGCCA
TGGAGCTAAGAAGCTTANGAAGGCTGGTCAGAGCGTTGGTTGGGT
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