FC921527

Overview
NameFC921527
Unique NameFC921527
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_MAGSM (50S ribosomal protein L2 OS=Magnetococcus sp. (strain MC-1) GN=rplB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.013e-16
Identity = 42/117 (35.90%), Postives = 73/117 (62.39%), Query Frame = 1
Query:  334 GDPSKQEKPKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS 684
            G+ S    P++  V D ++      +++ + G+CMPL  M IGTIIHN+E+ PG+GG++ R+AG   +++ +    +  +++PSG  +L+   C AT+G VSNP +   K+ KAG++
Sbjct:   99 GEKSYILAPQRLQVGDTVVSAKTLDNVDVKPGNCMPLRVMPIGTIIHNVELKPGKGGQVARSAGNYIQLMGK-EGKYAQLKMPSGEMRLVLLECMATVGMVSNPDNSNTKIGKAGRT 214          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_GEOTN (50S ribosomal protein L2 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rplB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.013e-16
Identity = 41/99 (41.41%), Postives = 68/99 (68.69%), Query Frame = 1
Query:  388 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS 684
            M  M+  + + ++G+ +PL  + +GT++HNIE+ PG+GG+LVRAAGTSA++L +    + ++RL SG  ++I  +CRAT+G V N  H    + KAG++
Sbjct:  114 MEIMSGPNADIKVGNALPLENIPVGTLVHNIELKPGRGGQLVRAAGTSAQVLGK-EGKYVIIRLASGEVRMILGKCRATVGEVGNEQHELVNIGKAGRA 211          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_BRUSU (50S ribosomal protein L2 OS=Brucella suis GN=rplB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.013e-16
Identity = 44/110 (40.00%), Postives = 72/110 (65.45%), Query Frame = 1
Query:  358 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQSV 687
            P++  V D+++   A   ++ + G+ MPL+ M +GTIIHN+E+ PG+GG++ R+AGT A+++        ++RL SG ++L+   C A++G VSNP HG     KAG+SV
Sbjct:  107 PQRLAVGDQVV---AGNSVDVKPGNAMPLSSMPVGTIIHNVELKPGKGGQIARSAGTYAQLVGR-DQGMAILRLNSGEQRLVSGACFASVGAVSNPDHGNINDGKAGRSV 212          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_BRUSI (50S ribosomal protein L2 OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=rplB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.013e-16
Identity = 44/110 (40.00%), Postives = 72/110 (65.45%), Query Frame = 1
Query:  358 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQSV 687
            P++  V D+++   A   ++ + G+ MPL+ M +GTIIHN+E+ PG+GG++ R+AGT A+++        ++RL SG ++L+   C A++G VSNP HG     KAG+SV
Sbjct:  107 PQRLAVGDQVV---AGNSVDVKPGNAMPLSSMPVGTIIHNVELKPGKGGQIARSAGTYAQLVGR-DQGMAILRLNSGEQRLVSGACFASVGAVSNPDHGNINDGKAGRSV 212          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_BRUMB (50S ribosomal protein L2 OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=rplB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.013e-16
Identity = 44/110 (40.00%), Postives = 72/110 (65.45%), Query Frame = 1
Query:  358 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQSV 687
            P++  V D+++   A   ++ + G+ MPL+ M +GTIIHN+E+ PG+GG++ R+AGT A+++        ++RL SG ++L+   C A++G VSNP HG     KAG+SV
Sbjct:  107 PQRLAVGDQVV---AGNSVDVKPGNAMPLSSMPVGTIIHNVELKPGKGGQIARSAGTYAQLVGR-DQGMAILRLNSGEQRLVSGACFASVGAVSNPDHGNINDGKAGRSV 212          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_BRUC2 (50S ribosomal protein L2 OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=rplB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.013e-16
Identity = 44/110 (40.00%), Postives = 72/110 (65.45%), Query Frame = 1
Query:  358 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQSV 687
            P++  V D+++   A   ++ + G+ MPL+ M +GTIIHN+E+ PG+GG++ R+AGT A+++        ++RL SG ++L+   C A++G VSNP HG     KAG+SV
Sbjct:  107 PQRLAVGDQVV---AGNSVDVKPGNAMPLSSMPVGTIIHNVELKPGKGGQIARSAGTYAQLVGR-DQGMAILRLNSGEQRLVSGACFASVGAVSNPDHGNINDGKAGRSV 212          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_BRUAB (50S ribosomal protein L2 OS=Brucella abortus GN=rplB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.013e-16
Identity = 44/110 (40.00%), Postives = 72/110 (65.45%), Query Frame = 1
Query:  358 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQSV 687
            P++  V D+++   A   ++ + G+ MPL+ M +GTIIHN+E+ PG+GG++ R+AGT A+++        ++RL SG ++L+   C A++G VSNP HG     KAG+SV
Sbjct:  107 PQRLAVGDQVV---AGNSVDVKPGNAMPLSSMPVGTIIHNVELKPGKGGQIARSAGTYAQLVGR-DQGMAILRLNSGEQRLVSGACFASVGAVSNPDHGNINDGKAGRSV 212          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_BRUA2 (50S ribosomal protein L2 OS=Brucella abortus (strain 2308) GN=rplB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.013e-16
Identity = 44/110 (40.00%), Postives = 72/110 (65.45%), Query Frame = 1
Query:  358 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQSV 687
            P++  V D+++   A   ++ + G+ MPL+ M +GTIIHN+E+ PG+GG++ R+AGT A+++        ++RL SG ++L+   C A++G VSNP HG     KAG+SV
Sbjct:  107 PQRLAVGDQVV---AGNSVDVKPGNAMPLSSMPVGTIIHNVELKPGKGGQIARSAGTYAQLVGR-DQGMAILRLNSGEQRLVSGACFASVGAVSNPDHGNINDGKAGRSV 212          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_BRUA1 (50S ribosomal protein L2 OS=Brucella abortus (strain S19) GN=rplB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.013e-16
Identity = 44/110 (40.00%), Postives = 72/110 (65.45%), Query Frame = 1
Query:  358 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQSV 687
            P++  V D+++   A   ++ + G+ MPL+ M +GTIIHN+E+ PG+GG++ R+AGT A+++        ++RL SG ++L+   C A++G VSNP HG     KAG+SV
Sbjct:  107 PQRLAVGDQVV---AGNSVDVKPGNAMPLSSMPVGTIIHNVELKPGKGGQIARSAGTYAQLVGR-DQGMAILRLNSGEQRLVSGACFASVGAVSNPDHGNINDGKAGRSV 212          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_BREBN (50S ribosomal protein L2 OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=rplB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.013e-16
Identity = 49/109 (44.95%), Postives = 68/109 (62.39%), Query Frame = 1
Query:  358 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS 684
            P    V D+I+   +  D + +IG+ +P+  + +GT IHNIE+ PG+GG+LVRAAGTSA++L      F +VRL SG  + I   CRATIG V N  H    + KAG+S
Sbjct:  107 PHNLKVGDQIV---SGADADIKIGNALPMEKIPVGTTIHNIELKPGKGGQLVRAAGTSAQLLGR-DGEFVIVRLSSGETRRIHNVCRATIGQVGNLDHELLNIGKAGRS 211          
The following BLAST results are available for this feature:
BLAST of FC921527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_MAGSM1.013e-1635.9050S ribosomal protein L2 OS=Magnetococcus sp. (str... [more]
RL2_GEOTN1.013e-1641.4150S ribosomal protein L2 OS=Geobacillus thermodeni... [more]
RL2_BRUSU1.013e-1640.0050S ribosomal protein L2 OS=Brucella suis GN=rplB ... [more]
RL2_BRUSI1.013e-1640.0050S ribosomal protein L2 OS=Brucella suis (strain ... [more]
RL2_BRUMB1.013e-1640.0050S ribosomal protein L2 OS=Brucella melitensis bi... [more]
RL2_BRUC21.013e-1640.0050S ribosomal protein L2 OS=Brucella canis (strain... [more]
RL2_BRUAB1.013e-1640.0050S ribosomal protein L2 OS=Brucella abortus GN=rp... [more]
RL2_BRUA21.013e-1640.0050S ribosomal protein L2 OS=Brucella abortus (stra... [more]
RL2_BRUA11.013e-1640.0050S ribosomal protein L2 OS=Brucella abortus (stra... [more]
RL2_BREBN1.013e-1644.9550S ribosomal protein L2 OS=Brevibacillus brevis (... [more]

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Properties
Property NameValue
Genbank descriptionC32106A06EF RVDevelopN Citrus clementina cDNA clone C32106A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921527 ID=FC921527; Name=FC921527; organism=Citrus clementina; type=EST; length=695bp
GATCTCTCTAGTCTCTACTCACTTAGAAAAACTCTCACGGTGGCCGTCAC
CTTTCTTCTCAGTGTGATCACCCATCTTTCAATTCCACAGCATTCTTTTC
TCAGCCGTGGGGTGCTTTAGCTTCTGTCACCGCCGGCAACATGTTGTGAT
AGACAGTGAAATCAACAGAAGAAAACAAAACGTAGGAGAAAGAGACACAG
AAAGAGATCAGCAGAAATGGCTTTGTGCAGAGTACGCTCAGCTTCATCGA
CGCTCTTCAACAGGCTTCTCTGTCCTTCCGTTCTCAACAACAACACTACT
TATCGCTATCAGTCCTCTGAAACCGAATTAGTTGGTGATCCTTCAAAACA
AGAAAAACCAAAAAAAGAAACTGTGCGTGATAAGATAATGAGACAGATGG
CTCATGTTGATATAAATTCTCAAATTGGAAGTTGCATGCCACTTGCTTGT
ATGCGTATTGGGACCATCATTCACAACATTGAGGTAAACCCAGGACAAGG
TGGCAAGCTAGTTAGAGCTGCGGGGACGTCAGCCAAGATTTTGAAAGAAC
CCACTTCAAGCTTCTGTTTAGTAAGACTACCTTCTGGTAATGAGAAACTG
ATTGACACTAGATGTCGAGCCACCATTGGTACAGTGTCTAACCCAAGCCA
TGGAGCTAAGAAGCTTANGAAGGCTGGTCAGAGCGTTGGTTGGGT
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