FC921544

Overview
NameFC921544
Unique NameFC921544
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921544 vs. ExPASy Swiss-Prot
Match: KUP_ERYLH (Probable potassium transport system protein kup OS=Erythrobacter litoralis (strain HTCC2594) GN=kup PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.973e-24
Identity = 63/214 (29.44%), Postives = 106/214 (49.53%), Query Frame = 1
Query:    7 GQIYIPEINWILMILTLAITIGFQDTTLIGNAYGLACMTVMFITTFLMALIIIFVWYKSIXXXXXXXXXXXXIEGVYLSAAFIKVPQGGWVPLVLSSVFMVVMYIWHYGTRKKYNFDLHNKVSLR-WLLGLGPSLGIVRVPGIGLIYSELATGVPAIFSHFVTNLPAFHKVLVFVCVKSVPVPYVSPEERFLIGRVCPRPYRMYRCIVRYGYKD 645
            GQIYIP INW LM+  + + + FQ+++ + +AYG+A    + I T LMA++++ VW                I+G Y +A   KVP GGW PLV+  +   ++  W  G  +K   +  ++V+L   +          RVPG  +  +    GVP+   H + +    H+ +V + V+   +PYV P +R     +      +YR I+ YG+ +
Sbjct:  336 GQIYIPVINWALMVAVILLVLTFQNSSNLASAYGIAVTGAVTIDTLLMAVLLVGVWKWKWYYAAPVVIVFLIIDGAYFAANLTKVPDGGWFPLVVGLIVFTLLTTWARG--RKLMRERMSEVALPIEIFAKSAHNSATRVPGTAIFMASSTAGVPSALLHNIKHNKVLHERVVILTVEISDIPYVDPAKRCEYSEI---GQGIYRAILHYGFME 544          
BLAST of FC921544 vs. ExPASy Swiss-Prot
Match: KUP_ZYMMO (Probable potassium transport system protein kup OS=Zymomonas mobilis GN=kup PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.495e-24
Identity = 62/214 (28.97%), Postives = 107/214 (50.00%), Query Frame = 1
Query:    7 GQIYIPEINWILMILTLAITIGFQDTTLIGNAYGLACMTVMFITTFLMALIIIFVWYKSIXXXXXXXXXXXXIEGVYLSAAFIKVPQGGWVPLVLSSVFMVVMYIWHYGTRKKYNFDLHNKVSLRWLLGL-GPSLGIVRVPGIGLIYSELATGVPAIFSHFVTNLPAFHKVLVFVCVKSVPVPYVSPEERFLIGRVCPRPYRMYRCIVRYGYKD 645
            GQIYIP +NW+LM + + +   F+++T + NAYG+A    MFIT+ +M +++  VW+               I+G +  +   K+P+GGW PL++  V   ++  W  G  +    +   +V++   L +   +   VR+PG  +  +    GVP    H + +    H+ ++ + VK   VPYV P  R  +  +       YR IVRYG+ +
Sbjct:  360 GQIYIPSVNWVLMFMVMVLIAMFKNSTNLANAYGIAVTGTMFITSCMMGVLVHRVWHWKAWQSIPLVSFFLLIDGAFFLSNVTKIPEGGWFPLLVGFVVFTMLMTWSRG--RHLMAERMRQVAMPIQLFIRSAAASAVRIPGTAIFLTPEDDGVPHALLHNLKHNKILHERVILLTVKIEDVPYVDPHYRASMSSL---EDGFYRLIVRYGFME 568          
BLAST of FC921544 vs. ExPASy Swiss-Prot
Match: KUP_NITMU (Probable potassium transport system protein kup OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=kup PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.223e-23
Identity = 66/213 (30.99%), Postives = 99/213 (46.48%), Query Frame = 1
Query:    7 GQIYIPEINWILMILTLAITIGFQDTTLIGNAYGLACMTVMFITTFLMALIIIFVWYKSIXXXXXXXXXXXXIEGVYLSAAFIKVPQGGWVPLVLSSVFMVVMYIWHYGTRKKYNFDLHNKVSLRWLLGLGPSLGIVRVPGIGLIYSELATGVPAIFSHFVTNLPAFHKVLVFVCVKSVPVPYVSPEERFLIGRVCPRPYRMYRCIVRYGYKD 645
            GQIYIP +NW L+ + L   +GF  ++ + +AYG+A  T M I T L   ++ +VW                I+  + SA  +KV QGGW PLV+ SV   +M  W  G +   +      + L+  L    +    RV G  +  +    GVP    H + +    H+ +VF+ V     P+V  E+R  I    P     Y+  VRYG+KD
Sbjct:  345 GQIYIPFVNWTLLSVVLMAVLGFGSSSNLASAYGVAVTTTMVIETTLTFFVLRYVWNYPFLLGILVTAFFLAIDSAFFSATILKVAQGGWFPLVIGSVIFFIMITWSRGRQMLVDHLRSVAIPLQSFLESLIAHPPTRVAGTSVFLTANPDGVPHALLHNLAHNQVLHERVVFLTVTYQETPWVPVEQRISIK---PLMENCYQITVRYGFKD 554          
BLAST of FC921544 vs. ExPASy Swiss-Prot
Match: KUP1_BRASO (Probable potassium transport system protein kup 1 OS=Bradyrhizobium sp. (strain ORS278) GN=kup1 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.223e-23
Identity = 55/202 (27.23%), Postives = 104/202 (51.49%), Query Frame = 1
Query:    4 YGQIYIPEINWILMILTLAITIGFQDTTLIGNAYGLACMTVMFITTFLMALIIIFVWYKSIXXXXXXXXXXXXIEGVYLSAAFIKVPQGGWVPLVLSSVFMVVMYIWHYGTRKKYNFDLHNKVSLRWLLGLGPSLGIVRVPGIGLIYSELATGVPAIFSHFVTNLPAFHKVLVFVCVKSVPVPYVSPEERFLIGRVCPRPYR 609
            YGQIY+  +NW+LM++T+++TIGF  +  + +AYG+A    M +T+ L+ + +  +W  S+            I+  +  A   K+ +GG+VPL+L++    +M+IWH G            + +   +       + RVPG  +  +    G P +    V +  A H+ L+ + V+ + +P+V+P++R  I  + P  +R
Sbjct:  336 YGQIYVGAVNWLLMLVTVSLTIGFGKSDNLASAYGIAVSLTMLMTSALLFIAMREIWQWSLLAAGAVAGVFLTIDSAFFLANLTKIAEGGYVPLLLATSVYGLMWIWHRGAAAVAERMRERLIPVAQFMADIAEKKVPRVPGTAVFLTRTERGAPPVMLWHVKHNRALHEHLLVLRVEVISIPWVAPDDRLKIEELAPNVWR 537          
BLAST of FC921544 vs. ExPASy Swiss-Prot
Match: KUP1_CHRVO (Probable potassium transport system protein kup 1 OS=Chromobacterium violaceum GN=kup1 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.089e-22
Identity = 67/218 (30.73%), Postives = 106/218 (48.62%), Query Frame = 1
Query:    7 GQIYIPEINWILMILTLAITIGFQDTTLIGNAYGLACMTVMFITTFLMALIIIFVWYKSIXXXXXXXXXXXXIEGVYLSAAFIKVPQGGWVPLVLSSVFMVVMYIWHYGTRKKYNFDLHNKVSLRWL---LGLGPSLGIVRVPGIGLIYSELATGVPAIFSHFVTNLPAFHKVLVFVCVKSVPVPYVSPEERFLIGRVCPR--PYRMYRCIVRYGYKD 645
            GQIY+P +NW LM+ T+A+ +GF+++  +  A+GLA  T M ITT L A++    W+               I+  +  A  +K   GGW+PL+L      VM  W  G R +       ++ L  L   LG+ P   + R+PG+G+  SE A G P +  H + +  A H+  + + ++ + VP  + E      RV  +     M R   RYGY +
Sbjct:  351 GQIYLPLLNWTLMLATIAVVLGFRESGKLAAAFGLAVSTTMAITTVLFAVLARRRWHWPWWAVALVAGSLFAIDLAFWLANALKFLDGGWLPLLLGLAVFCVMGCWFGGRRLQMRESRGRQLPLEALLSSLGMNP---VARIPGVGVFLSERADGTPLVLLHHLKHNQALHETAILLTLQMLDVPRAAGE------RVSAQWLGQGMARVTARYGYME 559          
BLAST of FC921544 vs. ExPASy Swiss-Prot
Match: KUP_THEEB (Probable potassium transport system protein kup OS=Thermosynechococcus elongatus (strain BP-1) GN=kup PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.017e-21
Identity = 64/215 (29.77%), Postives = 106/215 (49.30%), Query Frame = 1
Query:    7 GQIYIPEINWILMILTLAITIGFQDTTLIGNAYGLACMTVMFITTFLMALIIIFVWYKSIXXXXXXXXXXXXIEGVYLSAAFIKVPQGGWVPLVLSSVFMVVMYIWHYG--TRKKYNFDLHNKVSLRWLLGLGPSLGIVRVPGIGLIYSELATGVPAIFSHFVTNLPAFHKVLVFVCVKSVPVPYVSPEERFLIGRVCPRPYRMYRCIVRYGYKD 645
            GQIYIP INW+L++  L + + F+ ++ +  AYGLA    M +TT  + L+   +W  SI            IE  +L    +K+P GGW PL    V  +++  W  G    ++     + + SL+ LL    S G+ RVPGI + +S L   +P  F   + +    H+  +F+ + +  +P+V   E+ L  RV      +Y  I+  G++D
Sbjct:  339 GQIYIPVINWLLLVTVLLLVMTFRKSSELAGAYGLAVNLTMVVTTLCLILVARHLWRWSIVQISLVWVSILVIEIAFLIGNALKIPYGGWYPLAFGGVVYMLLGTWRQGQVLLRQQLLQANARFSLKELL----SQGVARVPGIAVFFSPLPDMIPLSFIQNLQHNHVLHQQTIFIHLATANLPHVPLSEQ-LTYRV--TDVGIYEIILTSGFRD 546          
BLAST of FC921544 vs. ExPASy Swiss-Prot
Match: KUP1_RHOP5 (Probable potassium transport system protein kup 1 OS=Rhodopseudomonas palustris (strain BisA53) GN=kup1 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.940e-21
Identity = 61/212 (28.77%), Postives = 97/212 (45.75%), Query Frame = 1
Query:    7 GQIYIPEINWILMILTLAITIGFQDTTLIGNAYGLACMTVMFITTFLMALIIIFVWYKSIXXXXXXXXXXXXIEGVYLSAAFIKVPQGGWVPLVLSSVFMVVMYIWHYGTRKKYNFDLHNKVSLRWLL-GLGPSLGIVRVPGIGLIYSELATGVPAIFSHFVTNLPAFHKVLVFVCVKSVPVPYVSPEERFLIGRVCPRPYRMYRCIVRYGY 639
            GQIY+P  NW L +  +A+ IGFQ ++ +  AYG+A    M I T L+A ++  +W   +            ++  + +A  IKV QGGW P+ +  V   V+  W  G     N      V L  ++  LGP   + R  G  +  +    GVP    H + +    H+ +V   V +   PYV   ER ++  +       YR ++RYG+
Sbjct:  335 GQIYVPFTNWTLYVAVMALVIGFQSSSNLAAAYGIAVTGTMMIDTILVAFVMALMWRWPLALVIAVAGTLLLVDLAFFTANAIKVAQGGWFPVFIGIVSFTVLTTWRRGRELVRNQIKKLAVPLDVVMRALGPD--VARARGTAIFLTAATDGVPPALLHNLKHNQTVHQRVVLATVMTTEAPYVPDTERIVLTEL---GNGFYRLLIRYGF 541          
BLAST of FC921544 vs. ExPASy Swiss-Prot
Match: KUP_POLSQ (Probable potassium transport system protein kup OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=kup PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.721e-21
Identity = 53/192 (27.60%), Postives = 94/192 (48.96%), Query Frame = 1
Query:    7 GQIYIPEINWILMILTLAITIGFQDTTLIGNAYGLACMTVMFITTFLMALIIIFVWYKSIXXXXXXXXXXXXIEGVYLSAAFIKVPQGGWVPLVLSSVFMVVMYIWHYGTRKKYNFDLHNKVSLRWLLGLGPSLGIVRVPGIGLIYSELATGVPAIFSHFVTNLPAFHKVLVFVCVKSVPVPYVSPEERFLI 582
            GQIY+P +NW L+ L + + + F+ +  +  AYG+A  T M +TT L A+++  VW  +             ++  +L+A  +K+ +GGW PL+L ++  + +  W+ G +      ++N + L+  +         RV G  L  +     VP  F H + +    H+ + F+ V    VPYV  EER  +
Sbjct:  359 GQIYMPFVNWTLLFLVIVVVLAFKKSENLAAAYGIAVTTTMIVTTLLAAIVMRVVWRWNTILVTLVIGAFLTVDLAFLTANLLKIMEGGWFPLLLGAICFLFLMTWYQGRKLLRQNAVNNGIELKGFIDALMQHPPHRVEGTALFLTAHVDYVPVSFLHNLKHNHVLHERVFFLKVSIWDVPYVKDEERITL 550          
BLAST of FC921544 vs. ExPASy Swiss-Prot
Match: KUP_HERAR (Probable potassium transport system protein kup OS=Herminiimonas arsenicoxydans GN=kup PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 6.721e-21
Identity = 63/214 (29.44%), Postives = 100/214 (46.73%), Query Frame = 1
Query:    7 GQIYIPEINWILMILTLAITIGFQDTTLIGNAYGLACMTVMFITTFLMALIIIFVWYKSIXXXXXXXXXXXXIEGVYLSAAFIKVPQGGWVPLVLSSVFMVVMYIWHYGTRKKYNFDLHNKVSLRWLLGLGPSLGIVRVPGIGLIYSELATGVPAIFSHFVTNLPAFHKVLVFVCVKSVPVPYVSPEERFLIGRVCPRPYRMYRCIVRYGYKDV 648
            GQIYIP +NW+ MI+ +   IGF  ++ +  AYG+A    M +TT L   +I + W  ++            I+    SA  +K+  GGW PL+L  V   +M  W  G    +     + + L   L         RVPG  +     + GVP    H +++    H+ +VF+ V+ + VPYV   ++  I  +    Y+M    V YG+K+V
Sbjct:  338 GQIYIPAVNWLQMIVVVLAVIGFGSSSNLAAAYGIAVTATMMVTTVLTFFVIRYRWKYNLILCVAATGFFLVIDLSLFSANMLKLFHGGWFPLLLGVVLFTLMLTWKRGRELVFENLQKHAIPLEDFLASLFISPPTRVPGTAIFLRGESDGVPHAMLHNLSHNKVLHERVVFLTVRMMEVPYVPKADQVRIEHLGDDCYQMN---VTYGFKNV 548          
BLAST of FC921544 vs. ExPASy Swiss-Prot
Match: KUP1_NOVAD (Probable potassium transport system protein kup 1 OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=kup1 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.721e-21
Identity = 62/211 (29.38%), Postives = 93/211 (44.08%), Query Frame = 1
Query:    7 GQIYIPEINWILMILTLAITIGFQDTTLIGNAYGLACMTVMFITTFLMALIIIFVWYKSIXXXXXXXXXXXXIEGVYLSAAFIKVPQGGWVPLVLSSVFMVVMYIWHYGTRKKYNFDLHNKVSLRWLLGLGPSLGIVRVPGIGLIYSELATGVPAIFSHFVTNLPAFHKVLVFVCVKSVPVPYVSPEERFLIGRVCPRPYRMYRCIVRYGY 639
            GQI+IP INW LMI  + + + FQ ++ +  AYG+A    M I  FL+A+++  +W                I+  YL A   K+P GGWVPLV+      ++  W  G            + L        S    RV G  +  +  A GVP+   H + +    H+ +V + V    VPYV   ER+    V       YR  +R+G+
Sbjct:  362 GQIFIPVINWALMIAVILLVLVFQRSSNLTAAYGIAVTGAMLIDNFLLAVVLFKLWQWKAPAAIAMLAVFFAIDAAYLGANMTKIPDGGWVPLVMGIAIFTLLTTWSRGRALMRENMAEGTIPLDVFTKSAHS-SAARVSGTAIFMASTAAGVPSALLHNIKHNKVLHERVVILTVSIEDVPYVDEGERY---SVKDFGNGFYRLTLRFGF 568          
The following BLAST results are available for this feature:
BLAST of FC921544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 301
Match NameE-valueIdentityDescription
KUP_ERYLH4.973e-2429.44Probable potassium transport system protein kup OS... [more]
KUP_ZYMMO6.495e-2428.97Probable potassium transport system protein kup OS... [more]
KUP_NITMU3.223e-2330.99Probable potassium transport system protein kup OS... [more]
KUP1_BRASO3.223e-2327.23Probable potassium transport system protein kup 1 ... [more]
KUP1_CHRVO2.089e-2230.73Probable potassium transport system protein kup 1 ... [more]
KUP_THEEB3.017e-2129.77Probable potassium transport system protein kup OS... [more]
KUP1_RHOP53.940e-2128.77Probable potassium transport system protein kup 1 ... [more]
KUP_POLSQ6.721e-2127.60Probable potassium transport system protein kup OS... [more]
KUP_HERAR6.721e-2129.44Probable potassium transport system protein kup OS... [more]
KUP1_NOVAD6.721e-2129.38Probable potassium transport system protein kup 1 ... [more]

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Properties
Property NameValue
Genbank descriptionC32106C06EF RVDevelopN Citrus clementina cDNA clone C32106C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921544 ID=FC921544; Name=FC921544; organism=Citrus clementina; type=EST; length=690bp
ATATATGGGCAGATATATATCCCAGAAATAAACTGGATCCTGATGATCCT
TACTCTTGCTATAACTATTGGGTTTCAGGACACAACTTTAATTGGAAATG
CTTATGGACTTGCTTGCATGACAGTTATGTTCATCACAACATTTCTCATG
GCACTTATCATAATCTTTGTCTGGTATAAAAGTATCTTTCTGGCTGGGGC
ATTCCTTTTATTCTTCTTGGCCATTGAAGGTGTTTACCTATCAGCAGCAT
TTATTAAAGTGCCTCAAGGAGGATGGGTCCCTCTTGTGCTCTCCTCTGTC
TTTATGGTTGTTATGTACATTTGGCATTATGGAACTCGCAAGAAGTACAA
TTTTGACCTGCATAACAAAGTTTCCTTAAGATGGTTACTTGGTCTGGGCC
CCAGCCTTGGTATCGTCCGTGTGCCTGGTATTGGCCTTATATACTCAGAA
TTGGCAACGGGGGTCCCTGCAATCTTCTCCCACTTTGTAACAAACCTGCC
AGCATTTCATAAGGTGCTGGTATTTGTTTGTGTAAAATCAGTTCCAGTGC
CATATGTTTCTCCTGAGGAACGCTTCCTTATTGGCCGTGTTTGCCCTCGG
CCGTACCGTATGTATAGGTGCATAGTGAGGTATGGTTACAAAGATGTTCA
GCGTGATGATGGCAATTTTGAGAACCAGCTCATTCAAGTA
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