FC921544

Overview
NameFC921544
Unique NameFC921544
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921544 vs. ExPASy Swiss-Prot
Match: KUP_YERP3 (Low affinity potassium transport system protein kup OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=kup PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.291e-19
Identity = 62/218 (28.44%), Postives = 101/218 (46.33%), Query Frame = 1
Query:    7 GQIYIPEINWILMILTLAITIGFQDTTLIGNAYGLACMTVMFITTFLMALIIIFVWYKSIXXXXXXXXXXXXIEGVYLSAAFIKVPQGGWVPLVLSSVFMVVMYIWHYGTRKKYNFDLHNKV-----SLRWLLGLGPSLGIVRVPGIGLIYSELATGVPAIFSHFVTNLPAFHKVLVFVCVKSVPVPYVSPEERFLIGRVCPRPYRMYRCIVRYGYKD 645
            GQIYIP INW L +  + + IGF+ ++ +  AYG+A    M IT+ L   +    W+ +             I+    SA  +K+  GGW+PL L  V  ++M  W     K   F L  ++     SL  ++        VRVPG  +  S     +P    H + +    H+ +V + +++  VPYV   ER  I ++ P     +R + RYG+++
Sbjct:  335 GQIYIPVINWTLYLAVVLVIIGFERSSNLAAAYGIAVTGTMVITSILFCTVAWKNWHWNRFLVAFLLMVLLIIDIPMFSANVLKLFSGGWLPLSLGLVMFIIMTTW-----KSERFSLLRRMHEHSNSLEAMIASLEKSPPVRVPGTAVYMSRAMNVIPFALLHNLKHNKVLHERVVLLTMRTDDVPYVHNVERVTIEQLSP---TFWRVVARYGWRE 544          
BLAST of FC921544 vs. ExPASy Swiss-Prot
Match: KUP4_BRASB (Probable potassium transport system protein kup 4 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=kup4 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.216e-19
Identity = 51/217 (23.50%), Postives = 103/217 (47.47%), Query Frame = 1
Query:    1 IYGQIYIPEINWILMILTLAITIGFQDTTLIGNAYGLACMTVMFITTFLMALIIIFVWYKSIXXXXXXXXXXXXIEGVYLSAAFIKVPQGGWVPLVLSSVFMVVMYIWHYG-TRKKYNFDLHNKVSLRWLLGLGPSLGIVRVPGIGLIYSELATGVPAIFSHFVTNLPAFHKVLVFVCVKSVPVPYVSPEERFLIGRVCPRPYRMYRCIVRYGYKDV 648
            +YGQIY+P +NW++M+ T+ ITI F  +  +  AYG A  T M +TT L+   +   W   +            ++  +  A  +K+ +GGW+PL   ++   +M  W  G    + +    ++   R++  L     + RVPG  +  +     +P +    V ++ A H+ ++ + +     P +  EER  + ++      ++R  +R+G+ ++
Sbjct:  351 VYGQIYVPVVNWMMMVATIGITIAFGSSDRLAGAYGTAVSTTMLLTTCLLFTAMRKTWRWPLAVSILIAGLFLIVDVGFFGANLLKIAEGGWLPLTFGALVFFLMLTWRSGIDAVRESLAQASEAPERFVADLAAG-KVPRVPGTAIFLTRTYQKIPPLLIDHVKHMGALHQSVIALTILFEESPRIDDEERCGVEKIAD---GIWRVTMRFGFVEI 563          
BLAST of FC921544 vs. ExPASy Swiss-Prot
Match: KUP3_BRAJA (Probable potassium transport system protein kup 3 OS=Bradyrhizobium japonicum GN=kup3 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.216e-19
Identity = 60/211 (28.44%), Postives = 98/211 (46.45%), Query Frame = 1
Query:    7 GQIYIPEINWILMILTLAITIGFQDTTLIGNAYGLACMTVMFITTFLMALIIIFVWYKSIXXXXXXXXXXXXIEGVYLSAAFIKVPQGGWVPLVLSSVFMVVMYIWHYGTRKKYNFDLHNKVSLRWLLGLGPSLGIVRVPGIGLIYSELATGVPAIFSHFVTNLPAFHKVLVFVCVKSVPVPYVSPEERFLIGRVCPRPYRMYRCIVRYGY 639
            GQIY+P +NW+L   TL   + F  +  +  AYG+A   +M ITT L AL+ I  W  S             I+ ++ SA  IK+ +GGW PL+L+++   +M  W  G +         +     L+    +    R+PG  +  +    GVP   + FV +    H+ ++ V V     P++  EER  +  + P    + R I+ YG+
Sbjct:  328 GQIYVPLVNWLLAAATLGAVLSFGSSDALAGAYGIAVSLLMAITTLLAALVAI-QWGYSPWLVVAVNGAFFVIDVIFFSANSIKLFEGGWFPLLLAALVAFMMLTWRSGVKLVEAARAKLRQPEEDLIETAVNKCSARLPGTAVFLASAPRGVPLALTQFVKHNRVLHERVLLVTVLIEESPHIPDEERAEVIEIIP---GITRVILHYGF 534          
BLAST of FC921544 vs. ExPASy Swiss-Prot
Match: KUP2_CHRVO (Probable potassium transport system protein kup 2 OS=Chromobacterium violaceum GN=kup2 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.073e-18
Identity = 56/213 (26.29%), Postives = 97/213 (45.54%), Query Frame = 1
Query:    7 GQIYIPEINWILMILTLAITIGFQDTTLIGNAYGLACMTVMFITTFLMALIIIFVWYKSIXXXXXXXXXXXXIEGVYLSAAFIKVPQGGWVPLVLSSVFMVVMYIWHYGTRKKYNFDLHNKVSLRWLLGLGPSLGIVRVPGIGLIYSELATGVPAIFSHFVTNLPAFHKVLVFVCVKSVPVPYVSPEERFLIGRVCPRPYRMYRCIVRYGYKD 645
            GQIY+P INW L++  L + + F++++ +  AYG+A    M ITT L  ++    W   +            I+  + +A   KV  GGW+PLV+      +M  W  G    +       + L   +    +    RV G  +  +    GVP    H + +    H+ +V + V++  +PYV  +ER  I ++       +R + RYG+K+
Sbjct:  334 GQIYMPFINWALLVAVLVVVLTFKNSSSLAAAYGIAVTGTMLITTMLFFVVARVNWRWPLPLALGITLLFGVIDTAFFAANVHKVADGGWLPLVMGMAIFTLMSTWKQGRDILFKRLREQALPLDDFIHNLEAYPPARVEGTAVFLTSTLHGVPHALLHNLKHNKVLHERVVLMTVRTEDIPYVPEDERLEIVQMSA---SFWRVMARYGFKE 543          
BLAST of FC921544 vs. ExPASy Swiss-Prot
Match: KUP_AZOSB (Probable potassium transport system protein kup OS=Azoarcus sp. (strain BH72) GN=kup PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.401e-18
Identity = 57/218 (26.15%), Postives = 101/218 (46.33%), Query Frame = 1
Query:    7 GQIYIPEINWILMILTLAITIGFQDTTLIGNAYGLACMTVMFITTFLMALIIIFVWYKSIXXXXXXXXXXXXIEGVYLSAAFIKVPQGGWVPLVLSSVFMVVMYIWHYGTRKKYNFDLHN-----KVSLRWLLGLGPSLGIVRVPGIGLIYSELATGVPAIFSHFVTNLPAFHKVLVFVCVKSVPVPYVSPEERFLIGRVCPRPYRMYRCIVRYGYKD 645
            GQIY+P +NW+L+   +A+ +GFQ ++ + +AYG+A    M I T L  +++  +W                ++  + SA  +K+  GGW PL++ +    ++  W  G R   N  + +      + ++ +    P     RV G  +  +    GVP    H + +    H+ +V + V +  VP+V   ER  +  +    Y  YR  V YG+KD
Sbjct:  351 GQIYVPGVNWMLLGAVVALVVGFQSSSALASAYGIAVTLTMMIDTVLAFVVVRSLWKWGRAKAVLFLVVFLAVDIAFFSATTVKIFAGGWFPLLIGAAIFTLLRTWKRG-RSLLNERIRSDTMPLDIFIQSMFQSPPP----RVEGTAVFMTTWLDGVPRALLHNLIHNKVLHERVVLLRVDTADVPHVPEGERVEVEEI---DYGFYRVRVHYGFKD 560          
BLAST of FC921544 vs. ExPASy Swiss-Prot
Match: KUP_THIDA (Probable potassium transport system protein kup OS=Thiobacillus denitrificans (strain ATCC 25259) GN=kup PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.830e-18
Identity = 61/218 (27.98%), Postives = 101/218 (46.33%), Query Frame = 1
Query:    7 GQIYIPEINWILMILTLAITIGFQDTTLIGNAYGLACMTVMFITTFLMALIIIFVWYKSIXXXXXXXXXXXXIEGVYLSAAFIKVPQGGWVPLVLSSVFMVVMYIWHYGTRKKYNFDLHNK-----VSLRWLLGLGPSLGIVRVPGIGLIYSELATGVPAIFSHFVTNLPAFHKVLVFVCVKSVPVPYVSPEERFLIGRVCPRPYRMYRCIVRYGYKD 645
            GQIYIP +NW L      + +GFQ ++ +  AYG+A      I T L+AL++   W                ++  +  A  +K+P+GGW PLV++ V   ++  W  G R+     LH +       +  LL   P+    RV G  +  +   +GVP    H + +    H+ +V + V+   VPYV  E R  + ++      ++  +VRYG+ D
Sbjct:  337 GQIYIPFVNWTLAAGVALLVLGFQSSSNLAAAYGIAVTATFAIDTVLLALLMRVNWNLGRAPTLVAAALFLTLDLAFFGANAVKIPEGGWFPLVVAVVVFTILVTWRRG-REIVGARLHERGLPLAPFVESLLAHPPA----RVGGTAVFMTTDPSGVPLALLHNLKHNKVLHERVVILNVRYGEVPYVPAEHRLAVTKL---GEGVFHVVVRYGFMD 546          
BLAST of FC921544 vs. ExPASy Swiss-Prot
Match: KUP1_RHOPS (Probable potassium transport system protein kup 1 OS=Rhodopseudomonas palustris (strain BisB5) GN=kup1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.830e-18
Identity = 53/190 (27.89%), Postives = 91/190 (47.89%), Query Frame = 1
Query:    7 GQIYIPEINWILMILTLAITIGFQDTTLIGNAYGLACMTVMFITTFLMALIIIFVWYKSIXXXXXXXXXXXXIEGVYLSAAFIKVPQGGWVPLVLSSVFMVVMYIWHYGTRKKYNFDLHNKVSL-RWLLGLGPSLGIVRVPGIGLIYSELATGVPAIFSHFVTNLPAFHKVLVFVCVKSVPVPYVSPEER 573
            GQIYIP  NW+L+I  L +   F+ ++ + +AYG+A    M IT+ +   ++   W  S+            ++ ++L A  +K+ +GGW+PLV+    M VM  W  GT+      + ++V L  ++  +  S  I RV G+ +  +      P    H + +    H+  V + V +  VP V   ER
Sbjct:  346 GQIYIPRANWLLLIAVLYLVFAFKSSSALASAYGIAVTGTMVITSVMAYFVMRKCWKWSVATSALIIAPFLTVDLIFLMANMLKIFEGGWIPLVIGGGLMGVMITWRRGTKIVAKKTVRDEVDLGDFIKSISVSSSISRVRGVAVFLTGNPNSTPTSLMHNLKHNKVLHEKNVILRVVTEDVPRVPEAER 535          
BLAST of FC921544 vs. ExPASy Swiss-Prot
Match: KUP1_RHOPA (Probable potassium transport system protein kup 1 OS=Rhodopseudomonas palustris GN=kup1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.830e-18
Identity = 58/212 (27.36%), Postives = 93/212 (43.87%), Query Frame = 1
Query:    7 GQIYIPEINWILMILTLAITIGFQDTTLIGNAYGLACMTVMFITTFLMALIIIFVWYKSIXXXXXXXXXXXXIEGVYLSAAFIKVPQGGWVPLVLSSVFMVVMYIWHYGTRKKYNFDLHNKVSLRWLL-GLGPSLGIVRVPGIGLIYSELATGVPAIFSHFVTNLPAFHKVLVFVCVKSVPVPYVSPEERFLIGRVCPRPYRMYRCIVRYGY 639
            GQIY+P  NW L    +A+ +GFQ ++ +  AYG+A    M I T L++ +   +W                ++  + +A  IKV QGGW PL +  +   V+  W  G            V L  +L  LGP+  + R  G  +  +    GVP    H + +    H+ ++   V +   PYV   ER  +  +       +R I+RYG+
Sbjct:  334 GQIYVPFTNWTLYFAVMALVVGFQSSSNLAAAYGIAVTGTMMIDTILVSFVAALLWRWHPVVVAVVIGTLLLLDFAFFAANIIKVAQGGWFPLFIGFISFTVLTTWRRGRALVRKQLKKQAVPLDVVLRALGPN--VSRARGTAVFLTAATDGVPPALLHNLKHNQTVHQRVILTTVSTAETPYVPDSERVHMTDIGD---GFHRLIIRYGF 540          
BLAST of FC921544 vs. ExPASy Swiss-Prot
Match: KUP3_RALEH (Probable potassium transport system protein kup 3 OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=kup3 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.391e-18
Identity = 51/189 (26.98%), Postives = 91/189 (48.15%), Query Frame = 1
Query:    7 GQIYIPEINWILMILTLAITIGFQDTTLIGNAYGLACMTVMFITTFLMALIIIFVWYKSIXXXXXXXXXXXXIEGVYLSAAFIKVPQGGWVPLVLSSVFMVVMYIWHYGTRKKYNFDLHNKVSLRWLLGLGPSLGIVRVPGIGLIYSELATGVPAIFSHFVTNLPAFHKVLVFVCVKSVPVPYVSPEER 573
            GQIY+P +NW+L++L + + I F+ +  +  AYG+A  T M ITTFL A+ +  VW                ++  + +A  +K+ +GGW PL+L S    ++  W+ G +      L + + L   +    +    RV G  +  +     VP    H + +    H+ +VF+   +  +PYV  ++R
Sbjct:  344 GQIYLPVVNWLLLVLVIGVVISFKKSENLAAAYGIAVTTTMVITTFLAAVCMRNVWKWDPALVAVLGTSFLLVDLAFFAANLLKIAEGGWFPLLLGSAAFFMLMTWYSGRKLLRARSLEDGIPLEPFIAGLLAHPPHRVEGTAVFLTGSIDTVPVSLLHNLKHNRVLHERVVFLTFVTRDIPYVDDDQR 532          
BLAST of FC921544 vs. ExPASy Swiss-Prot
Match: KUP3_LEGPH (Probable potassium transport system protein kup 3 OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=kup3 PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.122e-18
Identity = 51/214 (23.83%), Postives = 95/214 (44.39%), Query Frame = 1
Query:    4 YGQIYIPEINWILMILTLAITIGFQDTTLIGNAYGLACMTVMFITTFLMALIIIFVWYKSIXXXXXXXXXXXXIEGVYLSAAFIKVPQGGWVPLVLSSVFMVVMYIWHYGTRKKYNFDLHNKVSLRWLLGLGPSLGIVRVPGIGLIYSELATGVPAIFSHFVTNLPAFHKVLVFVCVKSVPVPYVSPEERFLIGRVCPRPYRMYRCIVRYGYKD 645
            YGQIYI  +NW+LM+ TL +TIGF  +  +  AYG+A    M  TT L+ + +  +W   I            ++  + +A   K   GG++P+ L+ +   +MYIWH G +          +++   L       +VRVP   +  +     +P I    V         ++ + + ++ +P   P +R    ++      ++  +  YG+ +
Sbjct:  340 YGQIYIGVVNWLLMLATLGLTIGFGSSEKLAAAYGIAVSATMLCTTLLLFIALHKLWKWDIITSGLVAGLFMIVDASFFAANLTKFINGGYIPITLAIIIYSMMYIWHKGYQTIAIKQKEKNITVASFLDSIQKERVVRVPKTAVFLTSKEQDIPPILVWHVKKNHVLQDKVIILKINNLSIPRCKPGDRL---QIVETGTGIWHAVANYGFME 550          
The following BLAST results are available for this feature:
BLAST of FC921544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 301
Match NameE-valueIdentityDescription
KUP_YERP36.291e-1928.44Low affinity potassium transport system protein ku... [more]
KUP4_BRASB8.216e-1923.50Probable potassium transport system protein kup 4 ... [more]
KUP3_BRAJA8.216e-1928.44Probable potassium transport system protein kup 3 ... [more]
KUP2_CHRVO1.073e-1826.29Probable potassium transport system protein kup 2 ... [more]
KUP_AZOSB1.401e-1826.15Probable potassium transport system protein kup OS... [more]
KUP_THIDA1.830e-1827.98Probable potassium transport system protein kup OS... [more]
KUP1_RHOPS1.830e-1827.89Probable potassium transport system protein kup 1 ... [more]
KUP1_RHOPA1.830e-1827.36Probable potassium transport system protein kup 1 ... [more]
KUP3_RALEH2.391e-1826.98Probable potassium transport system protein kup 3 ... [more]
KUP3_LEGPH3.122e-1823.83Probable potassium transport system protein kup 3 ... [more]

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Properties
Property NameValue
Genbank descriptionC32106C06EF RVDevelopN Citrus clementina cDNA clone C32106C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921544 ID=FC921544; Name=FC921544; organism=Citrus clementina; type=EST; length=690bp
ATATATGGGCAGATATATATCCCAGAAATAAACTGGATCCTGATGATCCT
TACTCTTGCTATAACTATTGGGTTTCAGGACACAACTTTAATTGGAAATG
CTTATGGACTTGCTTGCATGACAGTTATGTTCATCACAACATTTCTCATG
GCACTTATCATAATCTTTGTCTGGTATAAAAGTATCTTTCTGGCTGGGGC
ATTCCTTTTATTCTTCTTGGCCATTGAAGGTGTTTACCTATCAGCAGCAT
TTATTAAAGTGCCTCAAGGAGGATGGGTCCCTCTTGTGCTCTCCTCTGTC
TTTATGGTTGTTATGTACATTTGGCATTATGGAACTCGCAAGAAGTACAA
TTTTGACCTGCATAACAAAGTTTCCTTAAGATGGTTACTTGGTCTGGGCC
CCAGCCTTGGTATCGTCCGTGTGCCTGGTATTGGCCTTATATACTCAGAA
TTGGCAACGGGGGTCCCTGCAATCTTCTCCCACTTTGTAACAAACCTGCC
AGCATTTCATAAGGTGCTGGTATTTGTTTGTGTAAAATCAGTTCCAGTGC
CATATGTTTCTCCTGAGGAACGCTTCCTTATTGGCCGTGTTTGCCCTCGG
CCGTACCGTATGTATAGGTGCATAGTGAGGTATGGTTACAAAGATGTTCA
GCGTGATGATGGCAATTTTGAGAACCAGCTCATTCAAGTA
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