FC921560

Overview
NameFC921560
Unique NameFC921560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPA_MACFA (T-complex protein 1 subunit alpha OS=Macaca fascicularis GN=TCP1 PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 3.261e-68
Identity = 127/179 (70.95%), Postives = 155/179 (86.59%), Query Frame = 1
Query:  148 LDILGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAVKMTN 684
            L + G+R  G+ +R+QNVMA  ++ANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILK+LEVEHPAAKVL ELA+LQD+EVGDGTTSVVI+AAELLK A++L + KIHPTS+ISGYRLA +EA +Y+NE L V  ++LG+D L+N AKTSMS K+IG + DFFAN+VV+AV A+K T+
Sbjct:    5 LSVFGDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELGKQKIHPTSVISGYRLACKEAVRYINENLIVNTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTD 183          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPA1_MOUSE (T-complex protein 1 subunit alpha A OS=Mus musculus GN=Tcp1 PE=1 SV=2)

HSP 1 Score: 258.07 bits (658), Expect = 3.261e-68
Identity = 127/179 (70.95%), Postives = 155/179 (86.59%), Query Frame = 1
Query:  148 LDILGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAVKMTN 684
            L + G+R  G+ +R+QNVMA  ++ANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILK+LEVEHPAAKVL ELA+LQD+EVGDGTTSVVI+AAELLK A++LV+ KIHPTS+ISGYRLA +EA +Y+NE L +  ++LG+D L N AKTSMS K+IG + D+FAN+VV+AV AVK T+
Sbjct:    5 LSVFGDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYINENLIINADELGRDCLTNTAKTSMSSKIIGINGDYFANMVVDAVLAVKYTD 183          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPA_YEAST (T-complex protein 1 subunit alpha OS=Saccharomyces cerevisiae GN=TCP1 PE=1 SV=2)

HSP 1 Score: 257.299 bits (656), Expect = 5.563e-68
Identity = 124/182 (68.13%), Postives = 159/182 (87.36%), Query Frame = 1
Query:  139 SQTLDILGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAVKMTN 684
            S TL + GE+ +G D+R QNV+A  AVAN+VKSSLGPVGLDKMLVDDIGD T+TNDGATIL +L+V+HPA K+LVELA+ QDRE+GDGTTSVVI+A+ELLKRAN+LV+NKIHPT+II+G+R+A+REA +++NE L+  V+ LGK++L+N AKTSMS K+IG DSDFF+N+VV+A+ AVK  N
Sbjct:   10 SDTLFLGGEKISGDDIRNQNVLATMAVANVVKSSLGPVGLDKMLVDDIGDFTVTNDGATILSLLDVQHPAGKILVELAQQQDREIGDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALREAIRFINEVLSTSVDTLGKETLINIAKTSMSSKIIGADSDFFSNMVVDALLAVKTQN 191          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPA_SCHPO (T-complex protein 1 subunit alpha OS=Schizosaccharomyces pombe GN=cct1 PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.619e-67
Identity = 125/180 (69.44%), Postives = 158/180 (87.78%), Query Frame = 1
Query:  145 TLDILGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAVKMTN 684
            TL + GE+ +G+DVR QNV+A  A+AN+VKSSLGPVGLDKMLVDDIGDVT+TNDGATIL +L+VEHPA KVLVELA+ QD+EVGDGTTSVVI+AAELL+RAN+LV+NKIHPT+II+GYRLA+REA K++ + L+  V+ LGK+SL+N AKTSMS K+IG DSDFF+ + V+A+ +VK +N
Sbjct:    9 TLFLSGEKISGEDVRNQNVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATILSLLDVEHPAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLAIREAVKFMTDVLSCSVDSLGKESLINVAKTSMSSKIIGNDSDFFSTMAVDAMLSVKTSN 188          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPA_CAEEL (T-complex protein 1 subunit alpha OS=Caenorhabditis elegans GN=cct-1 PE=2 SV=2)

HSP 1 Score: 248.054 bits (632), Expect = 3.375e-65
Identity = 122/180 (67.78%), Postives = 152/180 (84.44%), Query Frame = 1
Query:  148 LDILGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAVKMTNH 687
            L + G+R  GQ +R+QNV A  A+ANIVKSSLGPVGLDKMLVDD+GDV +TNDGATILK LEVEHPA KVLVELA+LQD EVGDGTTSVVIVAAELLKRA++LV+ K+HPT+II+GYRLA +EA KY++E ++   + +G+ S+VN AKTSMS K+IG D+DFF  LVV+A +AV++ N+
Sbjct:    9 LALTGKRTTGQGIRSQNVTAAVAIANIVKSSLGPVGLDKMLVDDVGDVIVTNDGATILKQLEVEHPAGKVLVELAQLQDEEVGDGTTSVVIVAAELLKRADELVKQKVHPTTIINGYRLACKEAVKYISENISFTSDSIGRQSVVNAAKTSMSSKIIGPDADFFGELVVDAAEAVRVENN 188          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPA_DICDI (T-complex protein 1 subunit alpha OS=Dictyostelium discoideum GN=tcp1 PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 9.191e-63
Identity = 118/185 (63.78%), Postives = 153/185 (82.70%), Query Frame = 1
Query:  133 ISSQTLDILGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAVKMTNH 687
            +S++ L I G+R +G +VR QNV+A  A+ANIVK+S GP+GLDKML+D+IG + +TNDGATIL+ +++EHPAAK+LV+L+ELQD+EVGDGTT+VVI+AAELLKRAN+LV  K+HPT IISG+RLA  EA KY+NE LAVKVE L KD +VN AKTSMS K I  DSDFF+ +V+EA+  VK  ++
Sbjct:    1 MSNKVLMIDGDRISGNEVRAQNVLAVTAIANIVKTSFGPIGLDKMLIDNIGSIVVTNDGATILQKIDIEHPAAKILVQLSELQDQEVGDGTTTVVILAAELLKRANELVARKVHPTVIISGFRLACTEAIKYINETLAVKVETLPKDFIVNIAKTSMSSKTINDDSDFFSKIVIEAITRVKTIDY 185          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPA_SCHMA (T-complex protein 1 subunit alpha OS=Schistosoma mansoni GN=TCP-1A PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.467e-60
Identity = 114/178 (64.04%), Postives = 147/178 (82.58%), Query Frame = 1
Query:  148 LDILGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAVKMT 681
            L + GER +G+ VR QNV+A  + AN VK+SLGPVGLDKMLVDD+GDVTITNDGATILK+L+VEHPAAK+LV+LA+LQD EVGDGTTSVVI+AA LLK A++L+   +HPT++I+GYRLA REACKY+ E +A  V KLGK  L+N A+T+MS KLI  D+D F+ + V+A+ AV+++
Sbjct:    2 LTLGGERTSGESVRKQNVLAACSFANFVKTSLGPVGLDKMLVDDVGDVTITNDGATILKLLDVEHPAAKILVQLAQLQDEEVGDGTTSVVILAAALLKNADELISRFVHPTTVINGYRLACREACKYIQEHMAYDVNKLGKAGLINVARTAMSSKLINLDADMFSQMAVDALMAVEVS 179          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: THSB_DESMO (Thermosome subunit beta (Fragment) OS=Desulfurococcus mobilis GN=thsB PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.203e-40
Identity = 83/170 (48.82%), Postives = 123/170 (72.35%), Query Frame = 1
Query:  163 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAV 672
            +R  G+D    N++A +A++ ++K++ GP G+DKMLVD +GDVTITNDGATIL   E++HPAAK+LV++A+ QD EVGDGT   VI+A ELLK A +L+   IHPT IISGYR+AM EA K + +++A  ++   ++ L   A+TS++ K +    +FFA++ V+AV+ V
Sbjct:    1 QRTTGRDALRTNILAARAISEMIKTTYGPKGMDKMLVDALGDVTITNDGATILDKAEIQHPAAKMLVQVAKSQDSEVGDGTKRAVILAGELLKYAEELLDKNIHPTVIISGYRMAMEEALK-ILDQMAEPIDLNNEELLRKVARTSLTSKAVHDAREFFADIAVKAVKQV 169          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: THS_METKA (Thermosome subunit OS=Methanopyrus kandleri GN=ths PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.908e-40
Identity = 80/170 (47.06%), Postives = 127/170 (74.71%), Query Frame = 1
Query:  163 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAV 672
            +R  G+D +  N+MA + VA  V+++LGP+G+DKMLVD++GDV +TNDG TIL+ +++EHPAAK++VE+A+ Q+ EVGDGTT+ V++A ELL +A DL++  IHPT I  GYR+A+ +A + + E++A +++   +++L   AKT+M+ K +    D+ A LVV+AV+ V
Sbjct:   19 QRFVGRDAQRMNIMAARVVAETVRTTLGPMGMDKMLVDEMGDVVVTNDGVTILEEMDIEHPAAKMVVEVAKTQEDEVGDGTTTAVVLAGELLHKAEDLLQQDIHPTVIARGYRMAVEKA-EEILEEIAEEIDPDDEETLKKIAKTAMTGKGVEKARDYLAELVVKAVKQV 187          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: THSA_ARCFU (Thermosome subunit alpha OS=Archaeoglobus fulgidus GN=thsA PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.865e-39
Identity = 82/170 (48.24%), Postives = 121/170 (71.18%), Query Frame = 1
Query:  163 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAV 672
            +R  G+D +  N+MA + +A  VKS+LGP G+DKMLVD +GDV ITNDG TILK ++VEHPAAK+++E+A+ QD EVGDGTT+ V++A ELLK+A +L+   IHPT I  GYR+A  +A + + E +A+ ++   +++L   A T+++ K      D  ++LVVEAV+ V
Sbjct:   17 QRTVGRDAQRMNIMAARVIAEAVKSTLGPKGMDKMLVDSLGDVVITNDGVTILKEMDVEHPAAKMIIEVAKTQDNEVGDGTTTAVVLAGELLKKAEELLDQDIHPTVIARGYRMAANKAVE-ILESIAMDIDVEDEETLKKIAATAITGKHSEYALDHLSSLVVEAVKRV 185          
The following BLAST results are available for this feature:
BLAST of FC921560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
TCPA_MACFA3.261e-6870.95T-complex protein 1 subunit alpha OS=Macaca fascic... [more]
TCPA1_MOUSE3.261e-6870.95T-complex protein 1 subunit alpha A OS=Mus musculu... [more]
TCPA_YEAST5.563e-6868.13T-complex protein 1 subunit alpha OS=Saccharomyces... [more]
TCPA_SCHPO1.619e-6769.44T-complex protein 1 subunit alpha OS=Schizosacchar... [more]
TCPA_CAEEL3.375e-6567.78T-complex protein 1 subunit alpha OS=Caenorhabditi... [more]
TCPA_DICDI9.191e-6363.78T-complex protein 1 subunit alpha OS=Dictyostelium... [more]
TCPA_SCHMA1.467e-6064.04T-complex protein 1 subunit alpha OS=Schistosoma m... [more]
THSB_DESMO2.203e-4048.82Thermosome subunit beta (Fragment) OS=Desulfurococ... [more]
THS_METKA4.908e-4047.06Thermosome subunit OS=Methanopyrus kandleri GN=ths... [more]
THSA_ARCFU1.865e-3948.24Thermosome subunit alpha OS=Archaeoglobus fulgidus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32106F04EF RVDevelopN Citrus clementina cDNA clone C32106F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921560 ID=FC921560; Name=FC921560; organism=Citrus clementina; type=EST; length=689bp
GACATTCGACTGGAGAGGCCGCCTGCAATTTCTCGACTTCCCACTAAACT
CAAAAGCCTCAACTCACTCAACTCACTATTATCACATACCAGATCTAGGG
TTTTGCTCTTATCGTAAGTTATAGAAATGGCTATTTCATCGCAAACGCTT
GATATTCTAGGTGAACGCCAAGCCGGCCAAGATGTTCGCACTCAAAACGT
GATGGCGTGTCAAGCAGTTGCTAACATTGTTAAATCCTCACTCGGTCCTG
TTGGACTCGACAAGATGCTTGTTGATGATATTGGTGATGTAACAATAACT
AATGACGGTGCTACAATTCTGAAGATGTTAGAAGTTGAGCATCCGGCTGC
CAAGGTACTTGTGGAGTTGGCTGAGCTTCAAGATAGGGAAGTTGGAGATG
GAACTACTTCAGTGGTTATTGTCGCTGCGGAGTTGCTGAAGAGGGCTAAT
GATCTGGTTCGGAATAAGATTCACCCAACATCTATTATCAGTGGATACAG
ACTTGCAATGAGGGAAGCATGCAAGTATGTTAACGAAAAGTTGGCAGTGA
AGGTGGAAAAGCTTGGAAAAGATTCTTTGGTAAATTGTGCCAAGACAAGC
ATGTCCTNCAAGTTGATTGGTGGTGACAGCGACTTCTTTGCTAATTTGGT
TGTAGAAGCAGTTCAAGCAGTAAAGATGACTAATCACGA
back to top