FC921560

Overview
NameFC921560
Unique NameFC921560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: CH60_CLOK1 (60 kDa chaperonin OS=Clostridium kluyveri (strain NBRC 12016) GN=groL PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.252e-11
Identity = 51/169 (30.18%), Postives = 82/169 (48.52%), Query Frame = 1
Query:  178 QDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHP----AAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAV 672
            +D R +       +AN VK +LGP G + +L    G   ITNDG TI K +E+E P     A+++ E+A   +   GDGTT+  ++A  +++     V    +P  I  G ++A+ +A   V E   V     GK+ +   A  S S + IG        L+ +A++ V
Sbjct:    9 EDARKKMQEGVDKLANTVKVTLGPKGRNVVLDKKFGSPLITNDGVTIAKEIELEEPYENMGAQLVKEVATKTNDVAGDGTTTATLLAQAIIREGLKNVTAGANPMLIRQGIKIAVDKA---VEEIKKVSRTVNGKEDIARIAAISASDEEIG-------KLIADAMEKV 167          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: CH60_BACHD (60 kDa chaperonin OS=Bacillus halodurans GN=groL PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.252e-11
Identity = 49/169 (28.99%), Postives = 85/169 (50.30%), Query Frame = 1
Query:  178 QDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEV----EHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAV 672
            +D R   +     +A+ VK +LGP G + +L    G   ITNDG TI K +E+    E+  AK++ E+A   +   GDGTT+  ++A  +++     V +  +P  I  G   A + A + ++ K++  +E  GKDS+   A  S +   +G        ++ EA++ V
Sbjct:    9 EDARRSMLRGVDKLADAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDIAGDGTTTATVLAQAMIREGLKNVTSGANPMVIRKGIEKATQVAVEELS-KISKPIE--GKDSIAQVAAISSADDEVG-------KIIAEAMERV 167          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: CH60_BACA2 (60 kDa chaperonin OS=Bacillus amyloliquefaciens (strain FZB42) GN=groL PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.252e-11
Identity = 48/169 (28.40%), Postives = 86/169 (50.89%), Query Frame = 1
Query:  178 QDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEV----EHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAV 672
            ++ R   +    A+A+ VK +LGP G + +L    G   ITNDG TI K +E+    E+  AK++ E+A   +   GDGTT+  ++A  +++     V    +P  +  G   A+  A + + E ++  +E  GK+S+   A  S + + +G       +L+ EA++ V
Sbjct:    9 EEARRAMLRGVDALADAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGANPVGVRKGMEQAVTVAIENLKE-ISKPIE--GKESIAQVAAISAADEEVG-------SLIAEAMERV 167          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: CH60_METAC (60 kDa chaperonin OS=Methanosarcina acetivorans GN=groL PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.165e-11
Identity = 46/169 (27.22%), Postives = 80/169 (47.34%), Query Frame = 1
Query:  178 QDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEV----EHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAV 672
            ++ R   +     VAN VK +LGP G   +++D      +TNDG TI K +E+    E+  AK++ E+A       GDGTT+  ++A  +++     +    +P  +  G   A  +  +Y+  K    VE  GKD ++  A  S        + +   NL+ +A++ V
Sbjct:   10 ENARKTLLTGVDKVANTVKITLGPKGR-YVVLDKSTKPVVTNDGVTIAKEIELHDKFENMGAKLVKEVASRTQDNTGDGTTTATLLAQSMIREGLKNISAGANPIEVKKGIEFATEKVVEYLKNK---SVEVKGKDKIIQVATVS------ANNDEEIGNLITDAMERV 168          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: CH60_BACWK (60 kDa chaperonin OS=Bacillus weihenstephanensis (strain KBAB4) GN=groL PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.165e-11
Identity = 48/169 (28.40%), Postives = 80/169 (47.34%), Query Frame = 1
Query:  178 QDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEV----EHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAV 672
            ++ R   +     +AN VK +LGP G + +L    G   ITNDG TI K +E+    E+  AK++ E+A   +   GDGTT+  ++A  +++     V    +P  +  G   A+  A   + E  A+     GK S+   A  S + + +G        L+ EA++ V
Sbjct:    9 EEARRSMLRGVDTLANAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGANPMGLRKGIEKAVTAA---IEELKAISKPIEGKSSIAQVAAISSADEEVG-------QLIAEAMERV 167          
The following BLAST results are available for this feature:
BLAST of FC921560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
CH60_CLOK16.252e-1130.1860 kDa chaperonin OS=Clostridium kluyveri (strain ... [more]
CH60_BACHD6.252e-1128.9960 kDa chaperonin OS=Bacillus halodurans GN=groL P... [more]
CH60_BACA26.252e-1128.4060 kDa chaperonin OS=Bacillus amyloliquefaciens (s... [more]
CH60_METAC8.165e-1127.2260 kDa chaperonin OS=Methanosarcina acetivorans GN... [more]
CH60_BACWK8.165e-1128.4060 kDa chaperonin OS=Bacillus weihenstephanensis (... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32106F04EF RVDevelopN Citrus clementina cDNA clone C32106F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921560 ID=FC921560; Name=FC921560; organism=Citrus clementina; type=EST; length=689bp
GACATTCGACTGGAGAGGCCGCCTGCAATTTCTCGACTTCCCACTAAACT
CAAAAGCCTCAACTCACTCAACTCACTATTATCACATACCAGATCTAGGG
TTTTGCTCTTATCGTAAGTTATAGAAATGGCTATTTCATCGCAAACGCTT
GATATTCTAGGTGAACGCCAAGCCGGCCAAGATGTTCGCACTCAAAACGT
GATGGCGTGTCAAGCAGTTGCTAACATTGTTAAATCCTCACTCGGTCCTG
TTGGACTCGACAAGATGCTTGTTGATGATATTGGTGATGTAACAATAACT
AATGACGGTGCTACAATTCTGAAGATGTTAGAAGTTGAGCATCCGGCTGC
CAAGGTACTTGTGGAGTTGGCTGAGCTTCAAGATAGGGAAGTTGGAGATG
GAACTACTTCAGTGGTTATTGTCGCTGCGGAGTTGCTGAAGAGGGCTAAT
GATCTGGTTCGGAATAAGATTCACCCAACATCTATTATCAGTGGATACAG
ACTTGCAATGAGGGAAGCATGCAAGTATGTTAACGAAAAGTTGGCAGTGA
AGGTGGAAAAGCTTGGAAAAGATTCTTTGGTAAATTGTGCCAAGACAAGC
ATGTCCTNCAAGTTGATTGGTGGTGACAGCGACTTCTTTGCTAATTTGGT
TGTAGAAGCAGTTCAAGCAGTAAAGATGACTAATCACGA
back to top