FC921560

Overview
NameFC921560
Unique NameFC921560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: THSB_ARCFU (Thermosome subunit beta OS=Archaeoglobus fulgidus GN=thsB PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.087e-39
Identity = 81/170 (47.65%), Postives = 117/170 (68.82%), Query Frame = 1
Query:  163 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAV 672
            +R  G+D +  N+MA + +A  V+S+LGP G+DKMLVD +GDV ITNDG TILK ++VEHPAAK+++E+A+ QD EVGDGTT+ V++A ELLKRA +L+  +IHP  I +GYR A  +A + +NE +A+ + K   + L   A T+M+ K      D  A + V AV+ +
Sbjct:   17 QRTVGRDAQRMNIMAARVIAEAVRSTLGPKGMDKMLVDSLGDVVITNDGVTILKEIDVEHPAAKMIIEVAKTQDNEVGDGTTTAVVLAGELLKRAEELLDQEIHPAIIANGYRYAAEKALEILNE-IAIPISKDDDEILKKIATTAMTGKGAEVAIDKLAEIAVNAVKMI 185          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: THSA_SULTO (Thermosome subunit alpha OS=Sulfolobus tokodaii GN=thsA PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.256e-39
Identity = 85/178 (47.75%), Postives = 121/178 (67.98%), Query Frame = 1
Query:  163 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLG------KDSLVNCAKTSMSXKLIGG--DSDFFANLVVEAVQAV 672
            +R +G+D    N++A   +A ++KSSLGP GLDKML+D  GDVTITNDGATI+K +E++HPAAK+LVE A+ QD EVGDGTTS V++A  LL +A+DL+   IHPT II GY+ A+ ++ + + ++LA K++         +D L     T+MS K I G  + D   N+V++AV  V
Sbjct:   14 QRSSGRDALKNNILAAVTLAEMLKSSLGPRGLDKMLIDSFGDVTITNDGATIVKEMEIQHPAAKLLVEAAKAQDAEVGDGTTSAVVLAGLLLDKADDLLDQNIHPTIIIEGYKKALNKSLEII-DQLATKIDVSNLNSLATRDQLKKIVYTTMSSKFIAGGEEMDKIMNMVIDAVSIV 190          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: THSA_THEK1 (Thermosome subunit alpha OS=Thermococcus sp. (strain KS-1) GN=thsA PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.579e-38
Identity = 80/183 (43.72%), Postives = 128/183 (69.95%), Query Frame = 1
Query:  133 ISSQTLDILGE---RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAV 672
            +S Q + IL E   R  G+D +  N++A + +A  V+++LGP G+DKMLVD +GD+ +TNDGATIL  ++++HPAAK++VE+A+ QD+E GDGTT+ V++A ELL++A +L+   IHP+ II GY LA  +A + ++E +A++V+   +++L+  A TS++ K      +  A L VEAV+ V
Sbjct:    4 LSGQPVVILPEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDGATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILDE-IAIRVDPDDEETLLKIAATSITGKNAESHKELLAKLAVEAVKQV 185          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: THSA_THEAC (Thermosome subunit alpha OS=Thermoplasma acidophilum GN=thsA PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.579e-38
Identity = 81/170 (47.65%), Postives = 122/170 (71.76%), Query Frame = 1
Query:  163 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAV 672
            +R+ G++ +  N+ A +A+A+ V+++LGP G+DKMLVD IGD+ I+NDGATILK ++VEHP AK++VE+++ QD  VGDGTT+ V+++ ELLK+A  L+   +HPT I +GYRLA+ EA K ++E   +  +     +L   A T++S K  G  +DF A+LVV+AV AV
Sbjct:   16 QREQGKNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPTAKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDE---IAEKSTDDATLRKIALTALSGKNTGLSNDFLADLVVKAVNAV 182          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: THSA_PYRKO (Thermosome subunit alpha OS=Pyrococcus kodakaraensis GN=thsA PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.579e-38
Identity = 80/183 (43.72%), Postives = 128/183 (69.95%), Query Frame = 1
Query:  133 ISSQTLDILGE---RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAV 672
            +S Q + IL E   R  G+D +  N++A + +A  V+++LGP G+DKMLVD +GD+ +TNDGATIL  ++++HPAAK++VE+A+ QD+E GDGTT+ V++A ELL++A +L+   IHP+ II GY LA  +A + ++E +A++V+   +++L+  A TS++ K      +  A L VEAV+ V
Sbjct:    4 LSGQPVVILPEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDGATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILDE-IAIRVDPDDEETLLKIAATSITGKNAESHKELLAKLAVEAVKQV 185          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: THSA_THEK8 (Thermosome subunit alpha OS=Thermococcus sp. (strain KS-8) GN=thsA PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.062e-38
Identity = 80/183 (43.72%), Postives = 127/183 (69.40%), Query Frame = 1
Query:  133 ISSQTLDILGE---RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAV 672
            +S Q + IL E   R  G+D +  N++A + +A  V+++LGP G+DKMLVD +GD+ +TNDGATIL  ++++HPAAK++VE+A+ QD+E GDGTT+ V++A ELL++A +L+   IHP+ II GY LA  +A + + E++A+KV    +++L+  A TS++ K      +  A L V+AV+ V
Sbjct:    4 LSGQPVVILPEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDGATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKA-QEILEEIAIKVNPDDEETLLRIAMTSITGKNAESHKELLAKLAVDAVKQV 185          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: THSA_AERPE (Thermosome subunit alpha OS=Aeropyrum pernix GN=thsA PE=3 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 2.062e-38
Identity = 83/172 (48.26%), Postives = 121/172 (70.35%), Query Frame = 1
Query:  163 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLI--GGDSDFFANLVVEAVQAV 672
            +R  G++    N++A + +A ++KSSLGP GLDKMLVD  GD+T+TNDGATI+K +E++HPAAK+LVE+A+ QD EVGDGTTSVV++A  LL++A  L+   +HPT II GY  AM EA + V+E  AV VE      L   A+T+++ K +  G + D   ++V++A++ V
Sbjct:   16 QRTYGREALRANILAARVLAEMLKSSLGPRGLDKMLVDAFGDITVTNDGATIVKEMEIQHPAAKLLVEVAKAQDAEVGDGTTSVVVLAGALLEKAEKLLDENLHPTIIIEGYTKAMEEALRLVDE-AAVPVEVEDDSVLRRIAETTLASKFVGTGPERDKIISMVIDAIRTV 186          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPA_ENCCU (T-complex protein 1 subunit alpha OS=Encephalitozoon cuniculi GN=TCP1 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.517e-38
Identity = 76/179 (42.46%), Postives = 121/179 (67.60%), Query Frame = 1
Query:  145 TLDIL--GERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAVK 675
            T DIL  GE  +G     +N  A   V N +K+S GP+GLDKM VD  G+V+ITNDGATIL+ + ++ PAAK+LV+LA  QD EVGDGTTSVV++A  L+++   L+ + +HP+ ++SGY++A  E  +++ + ++     LG  +L N  +TS+S K+I  +S+ F  +V++A++ ++
Sbjct:    7 TADILSGGESYSGISAVEKNAKAMMKVYNAIKTSFGPLGLDKMCVDSAGEVSITNDGATILQNMLIDDPAAKILVDLATQQDHEVGDGTTSVVLIAVSLIEKGAKLIASGVHPSVVVSGYKMAFNECVQFIKKSMSKSTLNLGSKALRNVVETSISSKVISSESEVFCGIVIDALKCIE 185          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: THS_PYRHO (Thermosome subunit OS=Pyrococcus horikoshii GN=ths PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.999e-38
Identity = 75/170 (44.12%), Postives = 122/170 (71.76%), Query Frame = 1
Query:  163 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAV 672
            +R  G+D +  N++A + +A  V+++LGP G+DKMLVD +GD+ ITNDGATIL  ++++HPAAK++VE+A+ QD+E GDGTT+ V++A ELLK+A +L+   IHP+ II GY LA ++A + + + +A +V+   ++ L+  A T+++ K    + ++ A L VEAV+ V
Sbjct:   17 QRYVGRDAQRMNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLKKAEELLDQNIHPSIIIKGYTLASQKA-QEILDSIAKEVKPDDEEVLLKAAMTAITGKAAEEEREYLAKLAVEAVKLV 185          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: THS_PYRAB (Thermosome subunit OS=Pyrococcus abyssi GN=ths PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.023e-37
Identity = 74/170 (43.53%), Postives = 121/170 (71.18%), Query Frame = 1
Query:  163 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAV 672
            +R  G+D +  N++A + +A  V+++LGP G+DKMLVD +GD+ ITNDGATIL  ++++HPAAK++VE+A+ QD+E GDGTT+ V++A ELLK+A +L+   IHP+ +I GY LA  +A + + + +A +V+   ++ L+  A T+++ K    + ++ A L VEAV+ V
Sbjct:   17 QRYVGRDAQRMNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLKKAEELLDQNIHPSIVIKGYMLAAEKA-QEILDSIAKEVKPDDEEVLLKAAMTAITGKAAEEEREYLAKLAVEAVKLV 185          
The following BLAST results are available for this feature:
BLAST of FC921560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
THSB_ARCFU7.087e-3947.65Thermosome subunit beta OS=Archaeoglobus fulgidus ... [more]
THSA_SULTO9.256e-3947.75Thermosome subunit alpha OS=Sulfolobus tokodaii GN... [more]
THSA_THEK11.579e-3843.72Thermosome subunit alpha OS=Thermococcus sp. (stra... [more]
THSA_THEAC1.579e-3847.65Thermosome subunit alpha OS=Thermoplasma acidophil... [more]
THSA_PYRKO1.579e-3843.72Thermosome subunit alpha OS=Pyrococcus kodakaraens... [more]
THSA_THEK82.062e-3843.72Thermosome subunit alpha OS=Thermococcus sp. (stra... [more]
THSA_AERPE2.062e-3848.26Thermosome subunit alpha OS=Aeropyrum pernix GN=th... [more]
TCPA_ENCCU3.517e-3842.46T-complex protein 1 subunit alpha OS=Encephalitozo... [more]
THS_PYRHO5.999e-3844.12Thermosome subunit OS=Pyrococcus horikoshii GN=ths... [more]
THS_PYRAB1.023e-3743.53Thermosome subunit OS=Pyrococcus abyssi GN=ths PE=... [more]

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Properties
Property NameValue
Genbank descriptionC32106F04EF RVDevelopN Citrus clementina cDNA clone C32106F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921560 ID=FC921560; Name=FC921560; organism=Citrus clementina; type=EST; length=689bp
GACATTCGACTGGAGAGGCCGCCTGCAATTTCTCGACTTCCCACTAAACT
CAAAAGCCTCAACTCACTCAACTCACTATTATCACATACCAGATCTAGGG
TTTTGCTCTTATCGTAAGTTATAGAAATGGCTATTTCATCGCAAACGCTT
GATATTCTAGGTGAACGCCAAGCCGGCCAAGATGTTCGCACTCAAAACGT
GATGGCGTGTCAAGCAGTTGCTAACATTGTTAAATCCTCACTCGGTCCTG
TTGGACTCGACAAGATGCTTGTTGATGATATTGGTGATGTAACAATAACT
AATGACGGTGCTACAATTCTGAAGATGTTAGAAGTTGAGCATCCGGCTGC
CAAGGTACTTGTGGAGTTGGCTGAGCTTCAAGATAGGGAAGTTGGAGATG
GAACTACTTCAGTGGTTATTGTCGCTGCGGAGTTGCTGAAGAGGGCTAAT
GATCTGGTTCGGAATAAGATTCACCCAACATCTATTATCAGTGGATACAG
ACTTGCAATGAGGGAAGCATGCAAGTATGTTAACGAAAAGTTGGCAGTGA
AGGTGGAAAAGCTTGGAAAAGATTCTTTGGTAAATTGTGCCAAGACAAGC
ATGTCCTNCAAGTTGATTGGTGGTGACAGCGACTTCTTTGCTAATTTGGT
TGTAGAAGCAGTTCAAGCAGTAAAGATGACTAATCACGA
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