FC921560

Overview
NameFC921560
Unique NameFC921560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: THS_METTL (Thermosome subunit OS=Methanococcus thermolithotrophicus GN=ths PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.023e-37
Identity = 77/170 (45.29%), Postives = 121/170 (71.18%), Query Frame = 1
Query:  163 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAV 672
            +R  G+D +  N++A + +   V+S+LGP G+DKMLVDD+GD+ +TNDG TILK + VEHPAAK+L+E+A+ Q++EVGDGTT+ V++A ELL++A +L+   +HPT +I GY+LA+++A + + E +A+ V+   K+ L   A TS++ K      +    ++VEAV AV
Sbjct:   15 KRFMGRDAQRMNILAGRIIGETVRSTLGPKGMDKMLVDDLGDIVVTNDGVTILKEMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVIAGELLRKAEELLDQNVHPTIVIKGYQLAVQKAQEVLKE-IAMDVKADDKEILHKIAMTSITGKGAEKAKEKLGEMIVEAVTAV 183          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: THSB_THEAC (Thermosome subunit beta OS=Thermoplasma acidophilum GN=thsB PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.023e-37
Identity = 85/183 (46.45%), Postives = 124/183 (67.76%), Query Frame = 1
Query:  133 ISSQTLDILGE---RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAV 672
            I+ Q + IL E   R++G+D   +N+ A  A++N V+SSLGP G+DKMLVD +GD+ ITNDG TILK ++VEHPAAK++VE+++ QD  VGDGTT+ VI+A  LL++A  L+   +HPT I  GYR+A  EA K V ++++ K+    K  L+  A+TS++ K      D  A +  EAV++V
Sbjct:    2 IAGQPIFILKEGTKRESGKDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEA-KRVIDEISTKIGADEKALLLKMAQTSLNSKSASVAKDKLAEISYEAVKSV 183          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: THS_DESSY (Thermosome subunit OS=Desulfurococcus sp. (strain SY) GN=ths PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.977e-37
Identity = 76/170 (44.71%), Postives = 119/170 (70.00%), Query Frame = 1
Query:  163 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAV 672
            +R  G+D +  N++A + VA  ++++LGP G+DKMLVD +GD+ ITNDGATIL  ++++HPAAK++VE+A+ QD+E GDGTT+ V++A ELLK+A +L+   IHP+ II GY LA  +A + + E +A +V     ++L   A TS++ K    + ++ A + VEAV+ V
Sbjct:   17 QRYVGRDAQRLNILAARIVAETIRTTLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLKKAEELLDQNIHPSIIIKGYALAAEKA-QEILEGIAKEVSPDDVETLKKAAVTSITGKAAEEEREYLAEIAVEAVRQV 185          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: THSB_THEK1 (Thermosome subunit beta OS=Thermococcus sp. (strain KS-1) GN=thsB PE=3 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 2.977e-37
Identity = 75/170 (44.12%), Postives = 120/170 (70.59%), Query Frame = 1
Query:  163 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAV 672
            +R  G+D +  N++A + +A  V+++LGP G+DKMLVD +GD+ ITNDGATIL  ++++HPAAK++VE+A+ QD+E GDGTT+ V++A ELL++A +L+   IHP+ II GY LA  +A + ++E +A  V+   ++ L   A TS++ K    + ++ A + VEAV+ V
Sbjct:   17 QRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILDE-IAKDVDVEDREILKKAAVTSITGKAAEEEREYLAEIAVEAVKQV 185          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: THSB_PYRKO (Thermosome subunit beta OS=Pyrococcus kodakaraensis GN=thsB PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.977e-37
Identity = 75/170 (44.12%), Postives = 120/170 (70.59%), Query Frame = 1
Query:  163 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAV 672
            +R  G+D +  N++A + +A  V+++LGP G+DKMLVD +GD+ ITNDGATIL  ++++HPAAK++VE+A+ QD+E GDGTT+ V++A ELL++A +L+   IHP+ II GY LA  +A + ++E +A  V+   ++ L   A TS++ K    + ++ A + VEAV+ V
Sbjct:   17 QRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILDE-IAKDVDVEDREILKKAAVTSITGKAAEEEREYLAEIAVEAVKQV 185          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: THS1_HALVO (Thermosome subunit 1 OS=Halobacterium volcanii GN=cct1 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.977e-37
Identity = 86/181 (47.51%), Postives = 123/181 (67.96%), Query Frame = 1
Query:  142 QTLDILGE---RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAVK 675
            Q + ILGE   R +GQD ++ N+ A +AVA  V+++LGP G+DKMLVD  G V +TNDG TILK ++++HPAA ++VE++E Q+ EVGDGTT+ VI A ELL +A DL+ + +H T+I  GYR A  +A K V E  A++V +  +++L   A T+M+ K      D  + LVV+AV AVK
Sbjct:    9 QPMIILGEDSQRTSGQDAQSMNITAGKAVAEAVRTTLGPKGMDKMLVDSGGQVVVTNDGVTILKEMDIDHPAANMIVEVSETQEDEVGDGTTTAVINAGELLDQAEDLLDSDVHATTIAQGYRQAAEKA-KEVLEDNAIEVTEDDRETLTKIAATAMTGKGAESAKDLLSELVVDAVLAVK 188          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: THSA_SULAC (Thermosome subunit alpha OS=Sulfolobus acidocaldarius GN=thsA PE=3 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 3.889e-37
Identity = 82/178 (46.07%), Postives = 119/178 (66.85%), Query Frame = 1
Query:  166 RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVE------KLGKDSLVNCAKTSMSXKLIGG---DSDFFANLVVEAVQAV 672
            R +G+D    N++A   +A ++KSSLGP GLDKML+D  GDVTITNDGATI+K +E++HPAAK+LVE A+ QD EVGDGTTS V++A  LL +A +L+   +HPT II GY+ A+ +A + + ++L++K++         K  L     T+MS K I G   + D   +LV++A+  V
Sbjct:   14 RSSGRDALRNNILAAVTLAEMLKSSLGPRGLDKMLIDSFGDVTITNDGATIVKEMEIQHPAAKLLVEAAKAQDAEVGDGTTSAVVLAGLLLDKAEELLEQNVHPTIIIDGYKKALTKALEII-DQLSLKIDVNDLSSPTAKAQLKKIVSTTMSSKFIAGGAEEIDKIIDLVIDAITIV 190          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: THSB_METTH (Thermosome subunit beta OS=Methanobacterium thermoautotrophicum GN=thsB PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.633e-37
Identity = 81/186 (43.55%), Postives = 127/186 (68.28%), Query Frame = 1
Query:  127 MAISSQTLDILGE---RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAVK 675
            MA   Q + +L E   R  G+D +  N++A + +A  V+++LGP G+DKMLVD +GD+ +TNDG TILK +++EHPAAK+LVE+A+ Q+ EVGDGTT+ VI+A ELLK+A +L+  +IHPT I  GYR A  +A + +++   + ++   +D+L+  A T+M+ K      +  A L+V+AV+ V+
Sbjct:    1 MAQGQQPILVLPEGTSRYLGRDAQRMNILAGKILAETVRTTLGPKGMDKMLVDSLGDIVVTNDGVTILKEMDIEHPAAKMLVEVAKTQEDEVGDGTTTAVIIAGELLKKAENLLEMEIHPTIIAMGYRQAAEKAQEILDD---IAIDASDRDTLMKVAMTAMTGKGTEKAREPLAELIVDAVKQVE 183          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: THS_METJA (Thermosome subunit OS=Methanocaldococcus jannaschii GN=ths PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.663e-37
Identity = 76/170 (44.71%), Postives = 121/170 (71.18%), Query Frame = 1
Query:  163 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAV 672
            +R  G+D +  N++A + +A  V+++LGP G+DKMLVD++GD+ +TNDG TILK + VEHPAAK+L+E+A+ Q++EVGDGTT+ V++A ELL++A +L+   IHP+ II+GY +A  +A + + + +A +V+    + L   A TS++ K      +  A +VVEAV+AV
Sbjct:   16 KRYVGRDAQRMNILAGRIIAETVRTTLGPKGMDKMLVDELGDIVVTNDGVTILKEMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVIAGELLRKAEELLDQNIHPSVIINGYEMARNKAVEEL-KSIAKEVKPEDTEMLKKIAMTSITGKGAEKAREQLAEIVVEAVRAV 184          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: THSB_AERPE (Thermosome subunit beta OS=Aeropyrum pernix GN=thsB PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.131e-36
Identity = 80/170 (47.06%), Postives = 116/170 (68.24%), Query Frame = 1
Query:  163 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAV 672
            +R  G++    N+MA +A+A I+K++ GP G+DKMLVD +GD+TITN+GATIL  ++V HPAAK+LV++++ Q+ E GDGT + VI A ELLK A  L+   IHPT I+ GY+ A+R+A + + E +A  V     + L   AKTS++ K +    D+FA L VEAV+ V
Sbjct:   24 QRSYGREALRANIMAVRAIAQILKTTYGPKGMDKMLVDSLGDITITNNGATILDKMDVAHPAAKMLVQISKGQEDEAGDGTKTTVIFAGELLKEAEKLLDINIHPTIIVEGYKEALRKASEVI-ESIAEPVSYDDVEKLKLIAKTSLNSKAVAEARDYFAELAVEAVRTV 192          
The following BLAST results are available for this feature:
BLAST of FC921560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
THS_METTL1.023e-3745.29Thermosome subunit OS=Methanococcus thermolithotro... [more]
THSB_THEAC1.023e-3746.45Thermosome subunit beta OS=Thermoplasma acidophilu... [more]
THS_DESSY2.977e-3744.71Thermosome subunit OS=Desulfurococcus sp. (strain ... [more]
THSB_THEK12.977e-3744.12Thermosome subunit beta OS=Thermococcus sp. (strai... [more]
THSB_PYRKO2.977e-3744.12Thermosome subunit beta OS=Pyrococcus kodakaraensi... [more]
THS1_HALVO2.977e-3747.51Thermosome subunit 1 OS=Halobacterium volcanii GN=... [more]
THSA_SULAC3.889e-3746.07Thermosome subunit alpha OS=Sulfolobus acidocaldar... [more]
THSB_METTH6.633e-3743.55Thermosome subunit beta OS=Methanobacterium thermo... [more]
THS_METJA8.663e-3744.71Thermosome subunit OS=Methanocaldococcus jannaschi... [more]
THSB_AERPE1.131e-3647.06Thermosome subunit beta OS=Aeropyrum pernix GN=ths... [more]

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Properties
Property NameValue
Genbank descriptionC32106F04EF RVDevelopN Citrus clementina cDNA clone C32106F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921560 ID=FC921560; Name=FC921560; organism=Citrus clementina; type=EST; length=689bp
GACATTCGACTGGAGAGGCCGCCTGCAATTTCTCGACTTCCCACTAAACT
CAAAAGCCTCAACTCACTCAACTCACTATTATCACATACCAGATCTAGGG
TTTTGCTCTTATCGTAAGTTATAGAAATGGCTATTTCATCGCAAACGCTT
GATATTCTAGGTGAACGCCAAGCCGGCCAAGATGTTCGCACTCAAAACGT
GATGGCGTGTCAAGCAGTTGCTAACATTGTTAAATCCTCACTCGGTCCTG
TTGGACTCGACAAGATGCTTGTTGATGATATTGGTGATGTAACAATAACT
AATGACGGTGCTACAATTCTGAAGATGTTAGAAGTTGAGCATCCGGCTGC
CAAGGTACTTGTGGAGTTGGCTGAGCTTCAAGATAGGGAAGTTGGAGATG
GAACTACTTCAGTGGTTATTGTCGCTGCGGAGTTGCTGAAGAGGGCTAAT
GATCTGGTTCGGAATAAGATTCACCCAACATCTATTATCAGTGGATACAG
ACTTGCAATGAGGGAAGCATGCAAGTATGTTAACGAAAAGTTGGCAGTGA
AGGTGGAAAAGCTTGGAAAAGATTCTTTGGTAAATTGTGCCAAGACAAGC
ATGTCCTNCAAGTTGATTGGTGGTGACAGCGACTTCTTTGCTAATTTGGT
TGTAGAAGCAGTTCAAGCAGTAAAGATGACTAATCACGA
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