FC921560

Overview
NameFC921560
Unique NameFC921560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: THS2_HALVO (Thermosome subunit 2 OS=Halobacterium volcanii GN=cct2 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.131e-36
Identity = 82/180 (45.56%), Postives = 124/180 (68.89%), Query Frame = 1
Query:  142 QTLDILGE---RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAV 672
            Q + I+GE   R   +D +  N+ A +AVA  V+S+LGP G+DKMLVD +GDVTITNDG TILK +++++P A+++VE+AE Q+ E GDGTT+ V +A ELLK A DL+   IHPT+II G+ LA  +A + +++ +A +V+   ++ L   A+TSM+ K    + +  A+L+V AV+ V
Sbjct:    9 QPMIIMGEDAQRVKDRDAQEYNIRAARAVAEAVRSTLGPKGMDKMLVDSMGDVTITNDGVTILKEMDIDNPTAEMIVEVAETQEDEAGDGTTTAVAIAGELLKNAEDLLEQDIHPTAIIRGFNLASEKAREEIDD-IAERVDPDDEELLKKVAETSMTGKSSELNKELLADLIVRAVRQV 187          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: THSB_THEK8 (Thermosome subunit beta OS=Thermococcus sp. (strain KS-8) GN=thsB PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.478e-36
Identity = 73/170 (42.94%), Postives = 119/170 (70.00%), Query Frame = 1
Query:  163 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAV 672
            +R  G+D +  N++A + +A  V+++LGP G+DKMLVD +GD+ ITNDGATIL  ++++HPAAK++VE+A+ QD+E GDGTT+ V++A ELL++A +L+   IHP+ II GY LA  +A + + + +A  V+   ++ L   A T+++ K    + ++ A + VEAV+ V
Sbjct:   17 QRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKA-QEILDSIARDVDVEDREILKKAAMTAITGKAAEEEREYLAEIAVEAVKQV 185          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: THSB_HALSA (Thermosome subunit beta OS=Halobacterium salinarium GN=thsB PE=3 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.478e-36
Identity = 80/186 (43.01%), Postives = 125/186 (67.20%), Query Frame = 1
Query:  124 EMAISSQTLDILGE---RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAV 672
            +  +  Q + I+G+   R   +D +  N+ A +AVA+ V+S+LGP G+DKMLV  +GDVT+TNDG TIL+ +++++P A+++VE+AE Q+ E GDGTT+ V +A ELLK A DL+   IHPT+II GY LA  +A + V + +AV V+   KD + + A+TSM+ K    D +  ++++ +AV  V
Sbjct:    4 QQRMQGQPMIIMGDDAQRVKDRDAQEHNISAARAVADAVRSTLGPKGMDKMLVSSMGDVTVTNDGVTILQEMDIDNPTAEMIVEVAETQEDEAGDGTTTAVAIAGELLKNAEDLLERDIHPTAIIKGYNLAAEQAREEV-DNVAVDVDPDDKDLIRSVAETSMTGKGAELDKELLSSIIYDAVNQV 188          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPH_CHICK (T-complex protein 1 subunit eta OS=Gallus gallus GN=CCT7 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.930e-36
Identity = 80/160 (50.00%), Postives = 110/160 (68.75%), Query Frame = 1
Query:  196 NVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDS----LVNCAKTSMSXKLIGGDSDFFANLVVEAV 663
            N+ ACQ +A  V+++LGP G+DK++VDD G  TI+NDGATILK+L+V HPAAK LV++A+ QD EVGDGTTSV ++AAE LK+    V   +HP  II  +R A + A   + + +AV V+K  KD     L  CA T++S KLI    +FF+ +VV+AV
Sbjct:   25 NINACQVIAEAVRTTLGPRGMDKLIVDDRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKD-IAVSVKKEDKDEQRSLLEKCAATALSSKLISQSKEFFSKMVVDAV 183          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: THSB_SULTO (Thermosome subunit beta OS=Sulfolobus tokodaii GN=thsB PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.578e-36
Identity = 77/169 (45.56%), Postives = 116/169 (68.64%), Query Frame = 1
Query:  166 RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAV 672
            R  G++    N+ A +AV   +KS+ GP G+DKMLVD +GD+TITNDGATIL  ++++HPAAK+LV++A+ QD E  DGT + VI+A EL+K+A +L+  +IHPT I+SG++ A  +A K + E++A KV     D L   A TS++ K + G  ++ A++V +AV  V
Sbjct:   25 RTYGKEALRINIAAVKAVEEALKSTYGPRGMDKMLVDSLGDITITNDGATILDKMDLQHPAAKLLVQIAKGQDEETADGTKTAVILAGELVKKAEELLYKEIHPTIIVSGFKKAEEQALKTI-EEIAQKVSVNDMDILKKVAMTSLNSKAVAGAREYLADIVAKAVTQV 192          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: THSA_SULSO (Thermosome subunit alpha OS=Sulfolobus solfataricus GN=thsA PE=3 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 4.753e-35
Identity = 77/174 (44.25%), Postives = 118/174 (67.82%), Query Frame = 1
Query:  166 RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVE------KLGKDSLVNCAKTSMSXKLI--GGDSDFFANLVVEAV 663
            R  G+D    N++A + +A +++SSLGP GLDKML+D  GDVTITNDGATI+K +E++HPAAK+LVE A+ QD EVGDGTTS V++A  LL++A  L+   IHPT II GY+ A  +A + +  +L  +++       + +D+L   A T+++ K I  G + +   ++V++A+
Sbjct:   14 RTTGRDALRNNILAAKTLAEMLRSSLGPKGLDKMLIDSFGDVTITNDGATIVKDMEIQHPAAKLLVEAAKAQDAEVGDGTTSAVVLAGALLEKAESLLDQNIHPTIIIEGYKKAYNKALELL-PQLGTRIDIKDLNSSVARDTLRKIAFTTLASKFIAEGAELNKIIDMVIDAI 186          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPH_PONAB (T-complex protein 1 subunit eta OS=Pongo abelii GN=CCT7 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.753e-35
Identity = 80/160 (50.00%), Postives = 107/160 (66.88%), Query Frame = 1
Query:  196 NVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGK----DSLVNCAKTSMSXKLIGGDSDFFANLVVEAV 663
            N+ ACQ +A  V+++LGP G+DK++VD  G  TI+NDGATILK+L+V HPAAK LV++A+ QD EVGDGTTSV ++AAE LK+    V   +HP  II  +R A + A   + E +AV V+K  K      L  CA T++S KLI     FFA +VV+AV
Sbjct:   25 NISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKE-IAVTVKKADKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAV 183          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPH_HUMAN (T-complex protein 1 subunit eta OS=Homo sapiens GN=CCT7 PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 4.753e-35
Identity = 80/160 (50.00%), Postives = 107/160 (66.88%), Query Frame = 1
Query:  196 NVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGK----DSLVNCAKTSMSXKLIGGDSDFFANLVVEAV 663
            N+ ACQ +A  V+++LGP G+DK++VD  G  TI+NDGATILK+L+V HPAAK LV++A+ QD EVGDGTTSV ++AAE LK+    V   +HP  II  +R A + A   + E +AV V+K  K      L  CA T++S KLI     FFA +VV+AV
Sbjct:   25 NISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKE-IAVTVKKADKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAV 183          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: THSA_SULSH (Thermosome subunit alpha OS=Sulfolobus shibatae GN=thsA PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.208e-35
Identity = 77/174 (44.25%), Postives = 118/174 (67.82%), Query Frame = 1
Query:  166 RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVE------KLGKDSLVNCAKTSMSXKLI--GGDSDFFANLVVEAV 663
            R  G+D    N++A + +A +++SSLGP GLDKML+D  GDVTITNDGATI+K +E++HPAAK+LVE A+ QD EVGDGTTS V++A  LL++A  L+   IHPT II GY+ A  +A + +  +L  +++       + +D+L   A T+++ K I  G + +   ++V++A+
Sbjct:   14 RTTGRDALRNNILAAKTLAEMLRSSLGPKGLDKMLIDSFGDVTITNDGATIVKDMEIQHPAAKLLVEAAKAQDAEVGDGTTSAVVLAGALLEKAESLLDQNIHPTIIIEGYKKAYTKALELL-PQLGTRIDIRDLNSSVARDTLRKIAFTTLASKFIAEGAELNKIIDMVIDAI 186          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPH_MOUSE (T-complex protein 1 subunit eta OS=Mus musculus GN=Cct7 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.208e-35
Identity = 80/160 (50.00%), Postives = 107/160 (66.88%), Query Frame = 1
Query:  196 NVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGK----DSLVNCAKTSMSXKLIGGDSDFFANLVVEAV 663
            N+ ACQ +A  V+++LGP G+DK++VD  G  TI+NDGATILK+L+V HPAAK LV++A+ QD EVGDGTTSV ++AAE LK+    V   +HP  II  +R A + A   + E +AV V+K  K      L  CA T++S KLI     FFA +VV+AV
Sbjct:   25 NISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKE-IAVTVKKQDKVEQRKMLEKCAMTALSSKLISQQKVFFAKMVVDAV 183          
The following BLAST results are available for this feature:
BLAST of FC921560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
THS2_HALVO1.131e-3645.56Thermosome subunit 2 OS=Halobacterium volcanii GN=... [more]
THSB_THEK81.478e-3642.94Thermosome subunit beta OS=Thermococcus sp. (strai... [more]
THSB_HALSA1.478e-3643.01Thermosome subunit beta OS=Halobacterium salinariu... [more]
TCPH_CHICK1.930e-3650.00T-complex protein 1 subunit eta OS=Gallus gallus G... [more]
THSB_SULTO9.578e-3645.56Thermosome subunit beta OS=Sulfolobus tokodaii GN=... [more]
THSA_SULSO4.753e-3544.25Thermosome subunit alpha OS=Sulfolobus solfataricu... [more]
TCPH_PONAB4.753e-3550.00T-complex protein 1 subunit eta OS=Pongo abelii GN... [more]
TCPH_HUMAN4.753e-3550.00T-complex protein 1 subunit eta OS=Homo sapiens GN... [more]
THSA_SULSH6.208e-3544.25Thermosome subunit alpha OS=Sulfolobus shibatae GN... [more]
TCPH_MOUSE6.208e-3550.00T-complex protein 1 subunit eta OS=Mus musculus GN... [more]

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Properties
Property NameValue
Genbank descriptionC32106F04EF RVDevelopN Citrus clementina cDNA clone C32106F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921560 ID=FC921560; Name=FC921560; organism=Citrus clementina; type=EST; length=689bp
GACATTCGACTGGAGAGGCCGCCTGCAATTTCTCGACTTCCCACTAAACT
CAAAAGCCTCAACTCACTCAACTCACTATTATCACATACCAGATCTAGGG
TTTTGCTCTTATCGTAAGTTATAGAAATGGCTATTTCATCGCAAACGCTT
GATATTCTAGGTGAACGCCAAGCCGGCCAAGATGTTCGCACTCAAAACGT
GATGGCGTGTCAAGCAGTTGCTAACATTGTTAAATCCTCACTCGGTCCTG
TTGGACTCGACAAGATGCTTGTTGATGATATTGGTGATGTAACAATAACT
AATGACGGTGCTACAATTCTGAAGATGTTAGAAGTTGAGCATCCGGCTGC
CAAGGTACTTGTGGAGTTGGCTGAGCTTCAAGATAGGGAAGTTGGAGATG
GAACTACTTCAGTGGTTATTGTCGCTGCGGAGTTGCTGAAGAGGGCTAAT
GATCTGGTTCGGAATAAGATTCACCCAACATCTATTATCAGTGGATACAG
ACTTGCAATGAGGGAAGCATGCAAGTATGTTAACGAAAAGTTGGCAGTGA
AGGTGGAAAAGCTTGGAAAAGATTCTTTGGTAAATTGTGCCAAGACAAGC
ATGTCCTNCAAGTTGATTGGTGGTGACAGCGACTTCTTTGCTAATTTGGT
TGTAGAAGCAGTTCAAGCAGTAAAGATGACTAATCACGA
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