FC921560

Overview
NameFC921560
Unique NameFC921560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPH_SCHPO (Probable T-complex protein 1 subunit eta OS=Schizosaccharomyces pombe GN=cct7 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.108e-35
Identity = 78/166 (46.99%), Postives = 109/166 (65.66%), Query Frame = 1
Query:  175 GQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNE---KLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAV 663
            G+     N+ AC AV + ++++LGP+G DK++VDD G+V I+NDGATI+K+L++ HPAAK LV++A  QD EVGDGTTSVV+ A ELL+ A   V + +    II GYR A + A   + E    L +  E   +D L  CA T+M+ KLI  +S FF  +VV+AV
Sbjct:   22 GRGQLLSNINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISNDGATIMKLLDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLIIRGYRKAAQLAVNKIKEIAIHLDLSDEGKLRDLLTKCASTAMNSKLIRSNSTFFTKMVVDAV 187          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPH_BOVIN (T-complex protein 1 subunit eta OS=Bos taurus GN=CCT7 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.108e-35
Identity = 80/160 (50.00%), Postives = 107/160 (66.88%), Query Frame = 1
Query:  196 NVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGK----DSLVNCAKTSMSXKLIGGDSDFFANLVVEAV 663
            N+ ACQ +A  V+++LGP G+DK++VD  G  TI+NDGATILK+L+V HPAAK LV++A+ QD EVGDGTTSV ++AAE LK+    V   +HP  II  +R A + A   + E +AV V+K  K      L  CA T++S KLI     FFA +VV+AV
Sbjct:   25 NISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKE-IAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAV 183          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: THSA_METTH (Thermosome subunit alpha OS=Methanobacterium thermoautotrophicum GN=thsA PE=3 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.383e-34
Identity = 81/186 (43.55%), Postives = 121/186 (65.05%), Query Frame = 1
Query:  127 MAISSQTLDILGE---RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAVK 675
            MA   Q + IL +   R  G++ +  N++A + +A  V+++LGP G+DKMLVD +GD+ ITNDG TIL+ +++ HPAAK+LVE+A+ Q+ EVGDGTT+ VI+A ELLK A  L+   +HPT I  GYR A  +A + + E   + +E   +D+L+  A T+M+ K      +  A LVV+AV  V+
Sbjct:    1 MAQGQQPIFILPQDTSRYVGREAQRINILAGKVLAETVRTTLGPKGMDKMLVDSLGDIVITNDGVTILREMDISHPAAKMLVEVAKTQEDEVGDGTTTAVIIAGELLKEAEKLIEMGVHPTIIALGYRNAALKAQEILEE---ISMEASDRDTLMKVAITAMTGKGSERAKEKLAELVVDAVMQVE 183          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: THSA_HALSA (Thermosome subunit alpha OS=Halobacterium salinarium GN=thsA PE=3 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.383e-34
Identity = 81/187 (43.32%), Postives = 120/187 (64.17%), Query Frame = 1
Query:  133 ISSQTLDILGE---RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAVKMTN 684
            + +Q L +L E   R +G+D ++ N+ A +AVA  V+++LGP G+DKMLVD  G+V +TNDG TILK +++EHPAA ++VE+AE Q+ EVGDGTT+ V+V+ ELL  A  L+   IH T++  GYR A  +A K + +  A+ V     ++L   A T+M+ K         ++LVV AVQ+V   N
Sbjct:    5 MGNQPLIVLSEDSQRTSGEDAQSMNITAGKAVAESVRTTLGPKGMDKMLVDSSGEVVVTNDGVTILKEMDIEHPAANMIVEVAETQETEVGDGTTTSVVVSGELLSEAETLLEQDIHATTLAQGYRQAAEKA-KELLDDAAIDVSADDTETLEKIAATAMTGKGAENAKGVLSDLVVRAVQSVADDN 190          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: THSB_SULSO (Thermosome subunit beta OS=Sulfolobus solfataricus GN=thsB PE=3 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 2.359e-34
Identity = 77/169 (45.56%), Postives = 110/169 (65.09%), Query Frame = 1
Query:  166 RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAV 672
            R  G++    N+ A +A+   +KS+ GP G+DKMLVD +GD+TITNDGATIL  ++++HP  K+LV++A+ QD E  DGT + VI+A EL K+A DL+  +IHPT I+SGY+ A   A K + E +A  V     D L   A TS+  K + G  ++ A+LVV+AV  V
Sbjct:   24 RTYGKEALRANIAAVKAIEEALKSTYGPRGMDKMLVDSLGDITITNDGATILDKMDLQHPTGKLLVQIAKGQDEETADGTKTAVILAGELAKKAEDLLYKEIHPTIIVSGYKKAEEIALKTIQE-IAQPVTINDTDVLRKVALTSLGSKAVAGAREYLADLVVKAVAQV 191          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: THSB_SULAC (Thermosome subunit beta OS=Sulfolobus acidocaldarius GN=thsB PE=3 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 3.081e-34
Identity = 75/169 (44.38%), Postives = 114/169 (67.46%), Query Frame = 1
Query:  166 RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAV 672
            R  G++    N+ A +AV   +K++ GP G+DKMLVD +GD+TITNDGATIL  ++++HPAAK+LV++A+ QD E  DGT + VI + EL+K+A +L+  +IHPT I+SGY+ A   A K + E+++ KV     + L   A TS+S K + G  +  A++VV+A+  V
Sbjct:   25 RTYGKEALRINIAAVKAVEEALKTTYGPRGMDKMLVDSLGDITITNDGATILDKMDLQHPAAKLLVQIAKGQDEETADGTKTAVIFSGELVKKAEELLYKEIHPTIIVSGYKKAEEMAIKTI-EEISTKVSVNDTEILRKVALTSLSSKAVAGAREHLADIVVKAITQV 192          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPH_PLAF7 (T-complex protein 1 subunit eta OS=Plasmodium falciparum (isolate 3D7) GN=PFC0350c PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.081e-34
Identity = 76/166 (45.78%), Postives = 110/166 (66.27%), Query Frame = 1
Query:  175 GQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNE---KLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAV 663
            G+    +N+ ACQ + +IVK++LGP G+DK++  +  DVTITNDGAT++ +L + HPAA +LV++A+ QD EVGDGTTSVV+VA ELL  A  L+ + I P  II G+R A   A   +NE     + K E+  +  L+ CA+T+++ KL+    +FF  LVV AV
Sbjct:   21 GRSQIIRNINACQIIVDIVKTTLGPRGMDKLIYTE-RDVTITNDGATVMNLLNISHPAASILVDIAKSQDDEVGDGTTSVVVVAGELLNEAKGLLNDGIEPNMIIDGFRNACNVAINKLNELSLNFSNKNEEEKRSILLKCAQTALNSKLVSNHKEFFGELVVNAV 185          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPE_YEAST (T-complex protein 1 subunit epsilon OS=Saccharomyces cerevisiae GN=CCT5 PE=1 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 5.256e-34
Identity = 73/170 (42.94%), Postives = 118/170 (69.41%), Query Frame = 1
Query:  163 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNE---KLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAV 663
            +RQ G + +  +++A ++VA+I+K+SLGP GLDK+L+   G++TITNDGATIL  +E+++  AK+LV+L++ QD E+GDGTT VV++A+ LL +A +L++  IHP  I +G+  A + A   + E    ++   ++L +D L+  AKTS+  K++  D D FA + VEAV
Sbjct:   39 KRQHGLEAKKSHILAARSVASIIKTSLGPRGLDKILISPDGEITITNDGATILSQMELDNEIAKLLVQLSKSQDDEIGDGTTGVVVLASALLDQALELIQKGIHPIKIANGFDEAAKLAISKLEETCDDISASNDELFRDFLLRAAKTSLGSKIVSKDHDRFAEMAVEAV 208          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: THSB_SULSH (Thermosome subunit beta OS=Sulfolobus shibatae GN=thsB PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.171e-33
Identity = 75/169 (44.38%), Postives = 109/169 (64.50%), Query Frame = 1
Query:  166 RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAV 672
            R  G++    N+ A +A+   +KS+ GP G+DKM VD +GD+TITNDGATIL  ++++HP  K+LV++A+ QD E  DGT + VI+A EL K+A DL+  +IHPT I+SGY+ A   A K + + +A  V     D L   A TS+  K + G  ++ A+LVV+AV  V
Sbjct:   24 RTYGKEALRANIAAVKAIEEALKSTYGPRGMDKMFVDSLGDITITNDGATILDKMDLQHPTGKLLVQIAKGQDEETADGTKTAVILAGELAKKAEDLLYKEIHPTIIVSGYKKAEEIALKTIQD-IAQPVSINDTDVLRKVALTSLGSKAVAGAREYLADLVVKAVAQV 191          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPD_AEDTR (T-complex protein 1 subunit delta OS=Aedes triseriatus PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.529e-33
Identity = 77/169 (45.56%), Postives = 109/169 (64.50%), Query Frame = 1
Query:  181 DVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAVKMTNH 687
            D+R  N+ A +AV++ +++SLGP G+DKM+    G+VTITNDGATILK + V HPAAK+LVEL+  QD E GDGTTSVV+VA  LLK    L++  IHPT+I   ++    +A   + E ++  +E   ++SLV  A TS++ K++   S   A + VEAV  V    H
Sbjct:   25 DIRQSNINAAKAVSDAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMNVIHPAAKMLVELSRAQDVEAGDGTTSVVVVAGALLKAVEKLLQMGIHPTAISDAFQKCSAKAVDILTE-MSTPIELTDRESLVKSASTSLNSKVVSQHSSQLAPIAVEAVLKVTEAGH 192          
The following BLAST results are available for this feature:
BLAST of FC921560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
TCPH_SCHPO8.108e-3546.99Probable T-complex protein 1 subunit eta OS=Schizo... [more]
TCPH_BOVIN8.108e-3550.00T-complex protein 1 subunit eta OS=Bos taurus GN=C... [more]
THSA_METTH1.383e-3443.55Thermosome subunit alpha OS=Methanobacterium therm... [more]
THSA_HALSA1.383e-3443.32Thermosome subunit alpha OS=Halobacterium salinari... [more]
THSB_SULSO2.359e-3445.56Thermosome subunit beta OS=Sulfolobus solfataricus... [more]
THSB_SULAC3.081e-3444.38Thermosome subunit beta OS=Sulfolobus acidocaldari... [more]
TCPH_PLAF73.081e-3445.78T-complex protein 1 subunit eta OS=Plasmodium falc... [more]
TCPE_YEAST5.256e-3442.94T-complex protein 1 subunit epsilon OS=Saccharomyc... [more]
THSB_SULSH1.171e-3344.38Thermosome subunit beta OS=Sulfolobus shibatae GN=... [more]
TCPD_AEDTR1.529e-3345.56T-complex protein 1 subunit delta OS=Aedes triseri... [more]

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Properties
Property NameValue
Genbank descriptionC32106F04EF RVDevelopN Citrus clementina cDNA clone C32106F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921560 ID=FC921560; Name=FC921560; organism=Citrus clementina; type=EST; length=689bp
GACATTCGACTGGAGAGGCCGCCTGCAATTTCTCGACTTCCCACTAAACT
CAAAAGCCTCAACTCACTCAACTCACTATTATCACATACCAGATCTAGGG
TTTTGCTCTTATCGTAAGTTATAGAAATGGCTATTTCATCGCAAACGCTT
GATATTCTAGGTGAACGCCAAGCCGGCCAAGATGTTCGCACTCAAAACGT
GATGGCGTGTCAAGCAGTTGCTAACATTGTTAAATCCTCACTCGGTCCTG
TTGGACTCGACAAGATGCTTGTTGATGATATTGGTGATGTAACAATAACT
AATGACGGTGCTACAATTCTGAAGATGTTAGAAGTTGAGCATCCGGCTGC
CAAGGTACTTGTGGAGTTGGCTGAGCTTCAAGATAGGGAAGTTGGAGATG
GAACTACTTCAGTGGTTATTGTCGCTGCGGAGTTGCTGAAGAGGGCTAAT
GATCTGGTTCGGAATAAGATTCACCCAACATCTATTATCAGTGGATACAG
ACTTGCAATGAGGGAAGCATGCAAGTATGTTAACGAAAAGTTGGCAGTGA
AGGTGGAAAAGCTTGGAAAAGATTCTTTGGTAAATTGTGCCAAGACAAGC
ATGTCCTNCAAGTTGATTGGTGGTGACAGCGACTTCTTTGCTAATTTGGT
TGTAGAAGCAGTTCAAGCAGTAAAGATGACTAATCACGA
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